BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2947.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774953.1| dipeptide/oligopeptide/nickel ABC transporte... 433 e-119 ref|YP_004472883.1| binding-protein-dependent transport systems ... 311 1e-82 ref|YP_546495.1| binding-protein-dependent transport systems inn... 300 3e-79 ref|YP_001907331.1| ABC transporter permease [Erwinia tasmaniens... 288 1e-75 ref|YP_002943977.1| binding-protein-dependent transport systems ... 287 1e-75 >ref|YP_003774953.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63045.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 288/325 (88%), Positives = 300/325 (92%), Gaps = 2/325 (0%) Query: 1 MDLTRFLTLPPATRRQLASALGQRLLQAALVALLVGTLCFFMTRLLPGDMAYRIAAGRYG 60 MDL RFL+ R LA+AL RLLQA LVALLVGTLCFFMTR+LPGDMAYRIAAGRYG Sbjct: 1 MDLNRFLSARSGQR--LAAALVPRLLQAVLVALLVGTLCFFMTRMLPGDMAYRIAAGRYG 58 Query: 61 YDMVTTEAALAVRAELGLDQPWFMALSEWWSRLLHLDLGVSQVTALPVLVEITHQLGPTL 120 YDMVTTEAALAVR ELGLD+PWFMALSEWWSRLLHLDLGVSQV++ PVL EI HQLGPTL Sbjct: 59 YDMVTTEAALAVRDELGLDRPWFMALSEWWSRLLHLDLGVSQVSSQPVLAEIAHQLGPTL 118 Query: 121 RLSFLAMVLSLLIGPTLGVLAGLHPGGWLDRATLAVSVLLRALPSFLLGLVLVLLFSVQL 180 RLS LAM LSLL+GPTLGVLAGLHPG WLDRATLA+SV LRALPSFLLGL+LVLLFSVQL Sbjct: 119 RLSLLAMALSLLVGPTLGVLAGLHPGRWLDRATLALSVGLRALPSFLLGLILVLLFSVQL 178 Query: 181 GALPAAGHTDHGGILLPALTLALGLAAVSCRVARDAMVQVRASEYFAFALTKGLTPAQAL 240 GALPAAGH DHGGILLPALTLALGLAAVSCRVARDAMVQVR S YFAFALTKGL+PAQAL Sbjct: 179 GALPAAGHGDHGGILLPALTLALGLAAVSCRVARDAMVQVRQSAYFAFALTKGLSPAQAL 238 Query: 241 LRHGVRNVAAPVTAYLGVQLVMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTAL 300 RHG+RNVAAPVTAYLGVQLVMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTAL Sbjct: 239 ARHGLRNVAAPVTAYLGVQLVMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTAL 298 Query: 301 VLGLLFVLFNALVDTTCAFLDPRGR 325 VLGL+FVLFNALVD CAFLDPRGR Sbjct: 299 VLGLMFVLFNALVDAACAFLDPRGR 323 >ref|YP_004472883.1| binding-protein-dependent transport systems inner membrane component [Pseudomonas fulva 12-X] gb|AEF20789.1| binding-protein-dependent transport systems inner membrane component [Pseudomonas fulva 12-X] Length = 311 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 188/305 (61%), Positives = 223/305 (73%) Query: 21 LGQRLLQAALVALLVGTLCFFMTRLLPGDMAYRIAAGRYGYDMVTTEAALAVRAELGLDQ 80 LG RLLQA +VA+L+G L F + LLPGD AYRIAAGRYGYDMV + AA AVRAELGLDQ Sbjct: 5 LGFRLLQAVMVAVLIGALTFLLMSLLPGDAAYRIAAGRYGYDMVNSAAAEAVRAELGLDQ 64 Query: 81 PWFMALSEWWSRLLHLDLGVSQVTALPVLVEITHQLGPTLRLSFLAMVLSLLIGPTLGVL 140 P + W LL LDLG S VT PVL + H+LG ++RL+ A++LS LIGP +G+ Sbjct: 65 PVLWRFTAWIGDLLTLDLGNSLVTGRPVLDMVAHELGSSVRLAVGAVLLSFLIGPPIGIF 124 Query: 141 AGLHPGGWLDRATLAVSVLLRALPSFLLGLVLVLLFSVQLGALPAAGHTDHGGILLPALT 200 AGL PGG LDR L +S + RA+P F+LG++LVL+FSV L LP+AGH +LP LT Sbjct: 125 AGLRPGGVLDRGLLLLSTVTRAIPHFVLGVILVLIFSVWLMVLPSAGHGSFTHTILPTLT 184 Query: 201 LALGLAAVSCRVARDAMVQVRASEYFAFALTKGLTPAQALLRHGVRNVAAPVTAYLGVQL 260 LALGLAAVS RVARDA V V +S YFAF KGL+ Q LRHG+RN+ PV YLGVQL Sbjct: 185 LALGLAAVSSRVARDATVAVASSAYFAFGRLKGLSGTQVFLRHGLRNIGVPVVTYLGVQL 244 Query: 261 VMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTALVLGLLFVLFNALVDTTCAFL 320 V L+EGVV+VET+FAWPGIGH LVHAI RDVPM+QGTAL +GL+FVL N VD + Sbjct: 245 VYLIEGVVVVETLFAWPGIGHGLVHAIVQRDVPMVQGTALAMGLMFVLLNTAVDLLNHVI 304 Query: 321 DPRGR 325 DPR R Sbjct: 305 DPRRR 309 >ref|YP_546495.1| binding-protein-dependent transport systems inner membrane component [Methylobacillus flagellatus KT] gb|ABE50654.1| binding-protein-dependent transport systems inner membrane component [Methylobacillus flagellatus KT] Length = 323 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 195/300 (65%), Positives = 236/300 (78%), Gaps = 1/300 (0%) Query: 27 QAALVALLVGTLCFFMTRLLPGDMAYRIAAGRYGYDMVTTEAALAVRAELGLDQPWFMAL 86 QA +VALLV T+CFF+ L GD+A+RIAAGRYGYDMVTT AA AVRAELGLD+P L Sbjct: 15 QAGIVALLVSTVCFFLMHSLSGDLAFRIAAGRYGYDMVTTAAAEAVRAELGLDRPLLQGL 74 Query: 87 SEWWSRLLHLDLGVSQVTALPVLVEITHQLGPTLRLSFLAMVLSLLIGPTLGVLAGLHPG 146 WW +LL DLG S +T+ PV+ EI Q G TL+L+ A+ LS++I +G++AGL+P Sbjct: 75 LFWWQQLLQFDLGDSYLTSAPVIEEIREQFGHTLQLAISALALSIVIALPVGLIAGLNPH 134 Query: 147 GWLDRATLAVSVLLRALPSFLLGLVLVLLFSVQLGALPAAGHT-DHGGILLPALTLALGL 205 GWLDR +LA+SV+LRA P FLLG++L+LL S +LG AA + +HGG+LLPALTLALGL Sbjct: 135 GWLDRVSLALSVVLRAFPPFLLGILLILLLSSKLGITNAANASHEHGGLLLPALTLALGL 194 Query: 206 AAVSCRVARDAMVQVRASEYFAFALTKGLTPAQALLRHGVRNVAAPVTAYLGVQLVMLVE 265 AAVS RVARDAMV+VR S YF FA TKGL+ ALLRHGVRN A PV AYLGVQLV L+E Sbjct: 195 AAVSSRVARDAMVEVRRSAYFNFARTKGLSDLLALLRHGVRNAAVPVIAYLGVQLVFLME 254 Query: 266 GVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTALVLGLLFVLFNALVDTTCAFLDPRGR 325 GV+++E++FAWPGIGHAL HA+FGRD+PMIQGTA+V+GLLFVL N LVD C DPR R Sbjct: 255 GVIIIESLFAWPGIGHALAHAVFGRDIPMIQGTAIVMGLLFVLCNTLVDIACLVADPRQR 314 >ref|YP_001907331.1| ABC transporter permease [Erwinia tasmaniensis Et1/99] emb|CAO96438.1| ABC transporter, permease protein [Erwinia tasmaniensis Et1/99] Length = 313 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 190/303 (62%), Positives = 231/303 (76%) Query: 21 LGQRLLQAALVALLVGTLCFFMTRLLPGDMAYRIAAGRYGYDMVTTEAALAVRAELGLDQ 80 LG RLLQA LVALLVG L F M R LPGD AYRIAAGRYGYD V AA AV+ ELGLD+ Sbjct: 5 LGYRLLQAGLVALLVGGLTFVMMRSLPGDSAYRIAAGRYGYDHVDAAAASAVQQELGLDR 64 Query: 81 PWFMALSEWWSRLLHLDLGVSQVTALPVLVEITHQLGPTLRLSFLAMVLSLLIGPTLGVL 140 P + AL++W+ LL + G S V+ PV+ EI HQLG +L L+ A++LSLL+GP LG++ Sbjct: 65 PAWQALADWFIELLRFNPGNSLVSGAPVMQEIGHQLGQSLLLAAAALLLSLLLGPPLGLI 124 Query: 141 AGLHPGGWLDRATLAVSVLLRALPSFLLGLVLVLLFSVQLGALPAAGHTDHGGILLPALT 200 AGL PGG LDR LA+S LRALP F+LGL+LVL+F++ LG LPAAG+ D +LLPALT Sbjct: 125 AGLFPGGKLDRMLLAISTALRALPHFVLGLILVLVFALGLGFLPAAGYGDAEHLLLPALT 184 Query: 201 LALGLAAVSCRVARDAMVQVRASEYFAFALTKGLTPAQALLRHGVRNVAAPVTAYLGVQL 260 LALGLAAVS RVAR+AM QV S+++ F +KGL RHG+RN + P+ YL VQ Sbjct: 185 LALGLAAVSSRVARNAMRQVTDSDWYHFGRSKGLNERTLFWRHGLRNASVPLVTYLSVQF 244 Query: 261 VMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTALVLGLLFVLFNALVDTTCAFL 320 + L+EGV++VET+FAWPGIGHALVHAIF RDVP+IQGTAL++GLLFVL NAL D C +L Sbjct: 245 IYLIEGVIVVETLFAWPGIGHALVHAIFARDVPVIQGTALIMGLLFVLLNALSDGLCYWL 304 Query: 321 DPR 323 DPR Sbjct: 305 DPR 307 >ref|YP_002943977.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS18711.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 329 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 185/313 (59%), Positives = 228/313 (72%) Query: 13 TRRQLASALGQRLLQAALVALLVGTLCFFMTRLLPGDMAYRIAAGRYGYDMVTTEAALAV 72 T + L +R +Q + LLVGT+CFFM R LPGDMA RIAAGRYGYD+V AA AV Sbjct: 12 THTAWSGILLRRGIQIVALGLLVGTVCFFMARSLPGDMATRIAAGRYGYDLVNNAAADAV 71 Query: 73 RAELGLDQPWFMALSEWWSRLLHLDLGVSQVTALPVLVEITHQLGPTLRLSFLAMVLSLL 132 R ELGLD+P ++AL +WW + LDLG S VT V E+THQLG T+ L+ ++ ++ + Sbjct: 72 RIELGLDRPVWLALLQWWGEIARLDLGTSLVTGNSVWGEVTHQLGATIDLAVASVFVAAI 131 Query: 133 IGPTLGVLAGLHPGGWLDRATLAVSVLLRALPSFLLGLVLVLLFSVQLGALPAAGHTDHG 192 +G LG+ +GLH GGW+DR TL ++V+LRA+P FLL ++L++L +VQLGALP AG G Sbjct: 132 VGLPLGIWSGLHAGGWIDRLTLVLAVVLRAMPPFLLAVLLMVLVAVQLGALPVAGDDHAG 191 Query: 193 GILLPALTLALGLAAVSCRVARDAMVQVRASEYFAFALTKGLTPAQALLRHGVRNVAAPV 252 +LLPALTL LGLAA RV R +M + AS F FA TKGL+ QAL+RHG+R A PV Sbjct: 192 SLLLPALTLGLGLAAGLARVTRASMREAVASPSFEFARTKGLSDRQALVRHGLRQAATPV 251 Query: 253 TAYLGVQLVMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTALVLGLLFVLFNAL 312 AYLGV V LVEG V+VET+FAWPGIGHALVHA+FGRDVPMIQG AL +GLLFV+FN L Sbjct: 252 VAYLGVHAVFLVEGAVVVETLFAWPGIGHALVHAVFGRDVPMIQGAALCMGLLFVVFNLL 311 Query: 313 VDTTCAFLDPRGR 325 VD C LDPR R Sbjct: 312 VDAACLALDPRRR 324