BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2946.p (542 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774952.1| dipeptide ABC transporter periplasmic protei... 752 0.0 ref|YP_002943976.1| family 5 extracellular solute-binding protei... 443 e-122 ref|YP_004156404.1| family 5 extracellular solute-binding protei... 438 e-120 ref|YP_546494.1| extracellular solute-binding protein [Methyloba... 437 e-120 ref|YP_001907330.1| Extracellular solute-binding protein, family... 423 e-116 >ref|YP_003774952.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63044.1| ABC-type dipeptide transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 415/522 (79%), Positives = 449/522 (86%), Gaps = 9/522 (1%) Query: 30 MLALLAAGTAPLAWAHGDEAGPHSHAITQTGSDVLTVVGPWELTGLDPSRSGYMFARMEV 89 + A L+A A AHGDEAG I G D+LTVVGPWELTGLDP+RSGYMFARMEV Sbjct: 21 LAATLSASPWHAALAHGDEAGHAHGDIAHAGKDMLTVVGPWELTGLDPTRSGYMFARMEV 80 Query: 90 LQTLLEVDDAGQLQPGLATGWQVSADGLQWRFGLPRARRYHDGSEVTPASILACLQRAAV 149 L+TLLEVDDAGQLQP +A+ W VSADGLQWRF L RYHDGS +TPASILACLQRA Sbjct: 81 LETLLEVDDAGQLQPSVASAWSVSADGLQWRFVLRSGLRYHDGSALTPASILACLQRAQA 140 Query: 150 RPGVLQLAGITGMAVQQSELVLSLRQPFGPLPYLLTHYSTQILAPASFDAQGNVVAILGT 209 RPGVL+LA I + V+ LV+ LR+PFGPLPYLLTHY+TQILAPASFDAQGNVVAI+G+ Sbjct: 141 RPGVLRLADIAALRVEGQTLVVVLRRPFGPLPYLLTHYTTQILAPASFDAQGNVVAIIGS 200 Query: 210 GPFRITSISLPQQFDVERAEAAP---------GRAVQRARYISVSRAETRTLLVQSGQAD 260 GPFRI SI+LPQQF+VER + G+ VQRARYISVSRAETRTLLVQSGQAD Sbjct: 201 GPFRIRSIALPQQFEVERVAGSVSGSGAGSDVGKVVQRARYISVSRAETRTLLVQSGQAD 260 Query: 261 LAFSLDPPSIRALQDSPRAVLLSAMLPRTTLLKLNAGHPFLADVRVRRAIALCIEREGIA 320 LAFSLDPPSIRALQDSPRA LLSAMLPRTTLLKLNAGHP LADVRVRRAI+LCIEREGIA Sbjct: 261 LAFSLDPPSIRALQDSPRASLLSAMLPRTTLLKLNAGHPLLADVRVRRAISLCIEREGIA 320 Query: 321 RALLRDADLGATQLLPPSLARWHDTRLPPLHTDLKQARRLLEEAGWRLGADGTRWKDGQK 380 RALLRD DLGATQL PPSLARWHD L PL T+L+QAR LL++AGWR G+DG R +DGQ+ Sbjct: 321 RALLRDPDLGATQLFPPSLARWHDAALAPLRTNLQQARSLLDQAGWRPGSDGVRRRDGQR 380 Query: 381 LQLTLTTFVDRPELPLIATALQEEMRQIGIAVRVTIGNSSDIPAGHRSGQLQMALAARNY 440 + L LTTFVDRPELPLIATALQEEMRQIG+AVRV IGNSSDIPAGHRSGQLQMALAARNY Sbjct: 381 MALNLTTFVDRPELPLIATALQEEMRQIGMAVRVVIGNSSDIPAGHRSGQLQMALAARNY 440 Query: 441 GNLPDPVASLLQDFGPQGGDWGAMGWHNQEVPALLAKLAATPAGEGDSGRAERARIVAVL 500 GNLPDPVASLLQDFGPQGGDWGAMGW NQEVPALLA+LAATPA G AERARIVA+L Sbjct: 441 GNLPDPVASLLQDFGPQGGDWGAMGWDNQEVPALLARLAATPADAAAKGNAERARIVALL 500 Query: 501 QEQLPVIPVVWYRQTCAVSRRLRGASIDPFERSYRIASLQWT 542 QEQLPVIPVVWYRQTCAVSRR+RGASIDPFERSYRI+SLQWT Sbjct: 501 QEQLPVIPVVWYRQTCAVSRRVRGASIDPFERSYRISSLQWT 542 >ref|YP_002943976.1| family 5 extracellular solute-binding protein [Variovorax paradoxus S110] gb|ACS18710.1| extracellular solute-binding protein family 5 [Variovorax paradoxus S110] Length = 518 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 262/518 (50%), Positives = 342/518 (66%), Gaps = 13/518 (2%) Query: 27 RRAMLALLAAGTAPLAWAHGDEAGPHSHAITQTGSDVLTVVGPWELTGLDPSRSGYMFAR 86 RR L L A G A A A + Q L +VGPWEL GL P+ SGY+F R Sbjct: 9 RRRALQLCAVGPAVAASAG---------LLAQPALSPLQIVGPWELGGLAPANSGYIFTR 59 Query: 87 MEVLQTLLEVDDAGQLQPGLATGWQVSADGLQWRFGLPRARRYHDGSEVTPASILACLQR 146 M++ +TL+E + G PGLA W VSADGL WRF L R+HDG+ VT A+++ CLQ Sbjct: 60 MQIAETLMEAREDGTPLPGLAERWGVSADGLAWRFTLRATARFHDGTPVTAAAVVRCLQA 119 Query: 147 AAVRPGVLQLAGITGMAVQQSELVL-SLRQPFGPLPYLLTHYSTQILAPASFDAQGNVVA 205 A V P +L LA I + + + +VL L P+G LP LL H ST +LAPAS+ G V Sbjct: 120 ARVAPALLSLAPIKSLDAEGAGVVLIRLASPYGGLPALLAHSSTMVLAPASYGPDGRVRT 179 Query: 206 ILGTGPFRITSISLPQQFDVERAEAAPGR--AVQRARYISVSRAETRTLLVQSGQADLAF 263 I+G+GP+R+ S++ PQ + + G AV+R RY++ RAETR L+ + GQADLA+ Sbjct: 180 IVGSGPYRVVSLAPPQHVEAAAFDGYDGARPAVERVRYLAAGRAETRALMAEGGQADLAY 239 Query: 264 SLDPPSIRALQDSPRAVLLSAMLPRTTLLKLNAGHPFLADVRVRRAIALCIEREGIARAL 323 LDP S+ L+ + + + LPRT +LK+NAG P L D+RVR+A++LCI+R GIA+AL Sbjct: 240 GLDPASLVRLRKRGQVRVDTVTLPRTVILKVNAGLPALKDLRVRQALSLCIDRAGIAKAL 299 Query: 324 LRDADLGATQLLPPSLARWHDTRLPPLHTDLKQARRLLEEAGWRLGADGTRWKDGQKLQL 383 LRD +L ATQL PP+L WHD L PL D A RLL EAGWR ADG R GQ L+L Sbjct: 300 LRDPELAATQLFPPTLKAWHDPALAPLTHDPAAAARLLAEAGWRRAADGLRDASGQPLRL 359 Query: 384 TLTTFVDRPELPLIATALQEEMRQIGIAVRVTIGNSSDIPAGHRSGQLQMALAARNYGNL 443 +L TF DRPELP+IA+ALQE+ RQ GIAV+V +GNS DIP GHR G LQ+ LAARNY + Sbjct: 360 SLRTFPDRPELPVIASALQEQWRQAGIAVQVGVGNSGDIPLGHRDGSLQLGLAARNYATV 419 Query: 444 PDPVASLLQDFGPQGGDWGAMGWHNQEVPALLAKLAATPAGEGDSGRAERARIVAVLQEQ 503 PDP +L+QDFG GGDWGAMGW + + L++L+ P+ + R RA++ AVLQ + Sbjct: 420 PDPTGTLMQDFGASGGDWGAMGWTSDALVKALSELSLGPSSAERTARL-RAQVAAVLQAE 478 Query: 504 LPVIPVVWYRQTCAVSRRLRGASIDPFERSYRIASLQW 541 LPVIP+ WYRQ AVS+R+ G S+DP ERSYR+ +++W Sbjct: 479 LPVIPIAWYRQQVAVSQRVAGVSLDPLERSYRLTAMRW 516 >ref|YP_004156404.1| family 5 extracellular solute-binding protein [Variovorax paradoxus EPS] gb|ADU38293.1| extracellular solute-binding protein family 5 [Variovorax paradoxus EPS] Length = 520 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 247/481 (51%), Positives = 327/481 (67%), Gaps = 4/481 (0%) Query: 64 LTVVGPWELTGLDPSRSGYMFARMEVLQTLLEVDDAGQLQPGLATGWQVSADGLQWRFGL 123 L +VGPWE+ GL P+ SG++F RM++ +TL+ D G PGLA W+VS DGL W F L Sbjct: 39 LQIVGPWEIAGLSPASSGHVFTRMQITETLMNASDDGLPLPGLAERWRVSGDGLAWHFTL 98 Query: 124 PRARRYHDGSEVTPASILACLQRAAVRPGVLQLAGITGMAVQQ-SELVLSLRQPFGPLPY 182 A R+HDG+ VT A+++ CLQ A V P +L A I + + +V+ L QP+G LP Sbjct: 99 RAAARFHDGAAVTAAAVVRCLQAARVAPALLSQAPIRSVETEGVGMVVIRLTQPYGALPA 158 Query: 183 LLTHYSTQILAPASFDAQGNVVAILGTGPFRITSISLPQQFDVERAEA--APGRAVQRAR 240 LL H ST +LAPAS+ A G V +I+G+GP+R+ S++ PQ + + P A++R R Sbjct: 159 LLAHSSTMLLAPASYAADGAVRSIVGSGPYRVVSMAPPQHVEAAVFDGYDGPRPAIERVR 218 Query: 241 YISVSRAETRTLLVQSGQADLAFSLDPPSIRALQDSPRAVLLSAMLPRTTLLKLNAGHPF 300 Y++ R+ETR L+ + GQADLA+ LDP S+ L+ + + + LPRT +LK+NAG P Sbjct: 219 YLAAGRSETRALMAEGGQADLAYGLDPASLVRLRKRGQVRVDTVTLPRTVILKVNAGLPA 278 Query: 301 LADVRVRRAIALCIEREGIARALLRDADLGATQLLPPSLARWHDTRLPPLHTDLKQARRL 360 L DVRVR+A++L I+R GIA+ALLRD +L ATQL PP++A WH+ LP L D A RL Sbjct: 279 LNDVRVRQALSLAIDRAGIAKALLRDPELAATQLFPPTMAAWHNNALPALKQDPDAAARL 338 Query: 361 LEEAGWRLGADGTRWKDGQKLQLTLTTFVDRPELPLIATALQEEMRQIGIAVRVTIGNSS 420 L EAGWR DG R GQ L+L+L TF DRPELPLIA+ALQE+ RQ GIAV+V+IGNS Sbjct: 339 LAEAGWRRAPDGLRDASGQPLRLSLRTFPDRPELPLIASALQEQWRQAGIAVQVSIGNSG 398 Query: 421 DIPAGHRSGQLQMALAARNYGNLPDPVASLLQDFGPQGGDWGAMGWHNQEVPALLAKLAA 480 DIP GHR G LQ+ LAARNY +PDP +L+QDFG GGDWGAMGW + V LA+L+ Sbjct: 399 DIPLGHRDGSLQLGLAARNYATVPDPTGTLMQDFGTSGGDWGAMGWRSDAVARALAELSR 458 Query: 481 TPAGEGDSGRAERARIVAVLQEQLPVIPVVWYRQTCAVSRRLRGASIDPFERSYRIASLQ 540 + + A R ++ AVL +LPVIP+ WYRQ AV RRL G S+DP ERSYR+ +++ Sbjct: 459 GTS-SAERAAALRTQVTAVLHAELPVIPITWYRQQVAVGRRLEGVSLDPLERSYRLTAMR 517 Query: 541 W 541 W Sbjct: 518 W 518 >ref|YP_546494.1| extracellular solute-binding protein [Methylobacillus flagellatus KT] gb|ABE50653.1| extracellular solute-binding protein, family 5 [Methylobacillus flagellatus KT] Length = 522 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 238/484 (49%), Positives = 322/484 (66%), Gaps = 7/484 (1%) Query: 64 LTVVGPWELTGLDPSRSGYMFARMEVLQTLLEVDDAGQLQPGLATGWQVSADGLQWRFGL 123 L++VGPWE++ L+PSR+GYMF RM+V + L+ D G+ PGLA W++S DGLQWRF L Sbjct: 39 LSIVGPWEISTLEPSRAGYMFLRMQVAEALVSTDLEGKAAPGLAERWEISTDGLQWRFFL 98 Query: 124 PRARRYHDGSEVTPASILACLQRAAVRPGVLQLAGITGM-AVQQSELVLSLRQPFGPLPY 182 R+HDGS VT S++ LQRA +PGVL +A I + A E+ ++L +P+ LP Sbjct: 99 RPDARFHDGSPVTTESVVMNLQRALSQPGVLAMAPIADISAAVPGEIKITLSKPYAMLPM 158 Query: 183 LLTHYSTQILAPASFDAQGNVVAILGTGPFRITSISLPQQFDVERAEAAPGR--AVQRAR 240 LL H S ILAPA+++ +G V +LG+GP+++ +LPQQF++ + GR A++ Sbjct: 159 LLAHSSAIILAPAAYNEKGQVRRMLGSGPYQLVRQTLPQQFELALSPHWQGRPPAIRHIH 218 Query: 241 YISVSRAETRTLLVQSGQADLAFSLDPPSIRALQDSPRAVLLSAMLPRTTLLKLNAGHPF 300 Y+SVSR ETR L+ +S QADL F DP S + L+ +PR VL L RT +LKLN+GH F Sbjct: 219 YLSVSRPETRALMAESHQADLVFGFDPASTQRLRRNPRVVLQEVDLARTVMLKLNSGHRF 278 Query: 301 LADVRVRRAIALCIEREGIARALLRDADLGATQLLPPSLARWH--DTRLPPLHTDLKQAR 358 L V R+A++L I+R GIA+ +LR +L A QLLPPS+ WH D P L TDL QA+ Sbjct: 279 LNTVETRQALSLAIDRAGIAKGILRTPELAADQLLPPSITHWHQADPEFPRLRTDLAQAK 338 Query: 359 RLLEEAGWRLGADGTRWKDGQKLQLTLTTFVDRPELPLIATALQEEMRQIGIAVRVTIGN 418 LL GW+ GADG ++G++ L LTTF DRPELP+IATALQ++ R++GI ++V + N Sbjct: 339 ALLSAQGWQPGADGILRRNGERFSLQLTTFPDRPELPIIATALQDQFRKLGIELKVIVTN 398 Query: 419 SSDIPAGHRSGQLQMALAARNYGNLPDPVASLLQDFGPQGGDWGAMGWHNQEVPALLAKL 478 SS+IP GHR+G+L+M L RN+ +PDP +L QDF GGDWGAM W N VPALL K+ Sbjct: 399 SSEIPLGHRTGKLEMGLVPRNFALVPDPFVTLNQDFKHGGGDWGAMNWQNGTVPALLEKI 458 Query: 479 AATPAGEGDSGRAERARIVAVLQEQLPVIPVVWYRQTCAVSRRLRGASIDPFERSYRIAS 538 A E S R I+ LQ+ LPVIPV WYR AV +LRG +DP E+SY I+ Sbjct: 459 ATET--EPASQAHYRHDIMLTLQQGLPVIPVTWYRLPVAVHPQLRGVKVDPLEQSYYISD 516 Query: 539 LQWT 542 + W+ Sbjct: 517 MAWS 520 >ref|YP_001907330.1| Extracellular solute-binding protein, family 5 [Erwinia tasmaniensis Et1/99] emb|CAO96437.1| Extracellular solute-binding protein, family 5 [Erwinia tasmaniensis Et1/99] Length = 525 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 225/481 (46%), Positives = 316/481 (65%), Gaps = 5/481 (1%) Query: 63 VLTVVGPWELTGLDPSRSGYMFARMEVLQTLLEVDDAGQLQPGLATGWQVSADGLQWRFG 122 + +V P+E+ G DP+ SG +F +M +++TL+ D AGQ PGLA+ W VSADGL WRF Sbjct: 46 IAALVAPFEIKGSDPTLSGDIFLKMSIVETLVNADSAGQPLPGLASSWSVSADGLLWRFN 105 Query: 123 LPRARRYHDGSEVTPASILACLQRAAVRPGVLQLAGITGMAVQQSELVLSLRQPFGPLPY 182 L YHDGS +T S++ L A +PG+L A I + + ++++ L+QPF PL Sbjct: 106 LRSGVMYHDGSPLTAQSVVNALDVARSKPGLLDKAPIAAIRAENQQVLIELKQPFTPLLS 165 Query: 183 LLTHYSTQILAPASFDAQGNVVAILGTGPFRITSISLPQQFDVERAEAAPGRA--VQRAR 240 +L QILAPAS+D VV ++GTGP+R+TS PQ+ V R G A +++A Sbjct: 166 MLAENRAQILAPASYDDAHKVVQVIGTGPYRLTSFQPPQKLTVARFHDYWGSAPSIEQAS 225 Query: 241 YISVSRAETRTLLVQSGQADLAFSLDPPSIRALQDSPRAVLLSAMLPRTTLLKLNAGHPF 300 Y++V RAETR LL +SG ADL +LDP S L+ + + LL+ +PRT LLK+NAG+P Sbjct: 226 YMAVGRAETRALLAESGDADLVLNLDPASRSRLKKNAKVQLLAIAIPRTVLLKVNAGYPL 285 Query: 301 LADVRVRRAIALCIEREGIARALLRDADLGATQLLPPSLARWHDTRLPPLHTDLKQARRL 360 L DVR R+A+++ ++REGIARA+LR A +L PPS+A+WH+ L PL ++ QA+ L Sbjct: 286 LNDVRARQALSMALDREGIARAILR-YQAAADRLFPPSVAQWHNPSLTPLGHNVPQAQAL 344 Query: 361 LEEAGWRLGADGTRWKDGQKLQLTLTTFVDRPELPLIATALQEEMRQIGIAVRVTIGNSS 420 L E GW+ GADGT ++GQ LTLTT+ DRPELPLIA A+Q+++R IG+ V + NS Sbjct: 345 LAELGWKPGADGTLQRNGQPFSLTLTTYPDRPELPLIAAAIQQQLRDIGVKVAINSTNSG 404 Query: 421 DIPAGHRSGQLQMALAARNYGNLPDPVASLLQDFGPQGGDWGAMGWHNQEVPALLAKLAA 480 +I A H G L++AL ARN+ PDP+ +LLQD+ PQGGDWGAM W + LA L Sbjct: 405 EIAAKHHDGSLELALVARNFALTPDPLGTLLQDYAPQGGDWGAMNWSDATFNQTLAGLVT 464 Query: 481 TPAGEGDSGRAERARIVAVLQEQLPVIPVVWYRQTCAVSRRLRGASIDPFERSYRIASLQ 540 + G+ +R ++ +LQ +LP IPV WY+Q+ AVS RL GA +DPFERS+ + ++ Sbjct: 465 --GSDPADGQKQREQLTRILQSELPTIPVAWYQQSAAVSHRLSGAVLDPFERSFGLEKMR 522 Query: 541 W 541 W Sbjct: 523 W 523