BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2943.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774949.1| drug/metabolite transporter (DMT) superfamil... 433 e-119 ref|NP_746958.1| hypothetical protein PP_4853 [Pseudomonas putid... 256 4e-66 ref|YP_004704109.1| hypothetical protein PPS_4698 [Pseudomonas p... 255 5e-66 ref|YP_001671130.1| hypothetical protein PputGB1_4910 [Pseudomon... 254 9e-66 ref|YP_001270035.1| hypothetical protein Pput_4731 [Pseudomonas ... 254 1e-65 >ref|YP_003774949.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ63041.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 276/294 (93%), Positives = 286/294 (97%) Query: 32 MTYKSLWFPLGAVLIWAGNTVISKMSAGVIAPEDISFYRWVLAALLMSPFLARPTWAARA 91 M YK LWFPLGAVLIWAGNTVISKMSA VIAPEDISFYRWVLAALLMSPFLAR TWAARA Sbjct: 1 MHYKHLWFPLGAVLIWAGNTVISKMSASVIAPEDISFYRWVLAALLMSPFLARQTWAARA 60 Query: 92 QIRPYLGKILVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPT 151 QIRP+LGKI+VLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPT Sbjct: 61 QIRPHLGKIVVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPT 120 Query: 152 VGTLAGGILSLFGLAVLIGRGHPLALFDQGVVTGDLLMLLATIAYGLYGVMLRRWALPLR 211 VGTL GGILSL GLAVLIGRGHPLALF+QGVVTGDLLMLLATIAYGLYGVMLRRWALPLR Sbjct: 121 VGTLGGGILSLLGLAVLIGRGHPLALFEQGVVTGDLLMLLATIAYGLYGVMLRRWALPLR 180 Query: 212 TWQLLYMQVLMAVVLLFPGYVLGHHSPLTRENLPILLYAGIAASILSQFLWMRGVQYLGA 271 TWQLLYMQVLMAVVLLFPG+VLGHHSP+TRENLPILLYAGIAASI+SQFLWMRGV YLGA Sbjct: 181 TWQLLYMQVLMAVVLLFPGFVLGHHSPVTRENLPILLYAGIAASIISQFLWMRGVAYLGA 240 Query: 272 SRCAIFVNLMPVFTVIIAVVALGEQLHGYHAIGGLITLAGVIMAQVFKQRLRWR 325 SRCAIFVNLMPVFTVIIAV+ALGEQLHGYHA+GG+ITL GVIMAQVF+QRLRWR Sbjct: 241 SRCAIFVNLMPVFTVIIAVLALGEQLHGYHAVGGVITLGGVIMAQVFRQRLRWR 294 >ref|NP_746958.1| hypothetical protein PP_4853 [Pseudomonas putida KT2440] gb|AAN70422.1|AE016684_1 membrane protein, putative [Pseudomonas putida KT2440] Length = 293 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 148/285 (51%), Positives = 204/285 (71%) Query: 39 FPLGAVLIWAGNTVISKMSAGVIAPEDISFYRWVLAALLMSPFLARPTWAARAQIRPYLG 98 FPL A+LIWAGNTV++KMSAG I P +I FYRW+LAALL +PFL W RA IRP+L Sbjct: 5 FPLTAILIWAGNTVVTKMSAGAIHPAEIGFYRWLLAALLFTPFLLPAVWRNRAAIRPHLA 64 Query: 99 KILVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPTVGTLAGG 158 K+ VL +LGM ++QSLAYFAA SAT+MGII SLMPL++L LSI L + + G L G Sbjct: 65 KVFVLGVLGMAMYQSLAYFAAGITSATNMGIILSLMPLMSLALSIAWLGQRLSYGALLGA 124 Query: 159 ILSLFGLAVLIGRGHPLALFDQGVVTGDLLMLLATIAYGLYGVMLRRWALPLRTWQLLYM 218 ++S FG+ ++ GHP +L QG+ +GDLLML+AT+AY LY +L++W L L QLLY+ Sbjct: 125 VVSFFGVLEVVSAGHPASLLQQGLNSGDLLMLVATLAYALYSFLLKKWQLRLPPMQLLYL 184 Query: 219 QVLMAVVLLFPGYVLGHHSPLTRENLPILLYAGIAASILSQFLWMRGVQYLGASRCAIFV 278 QVL+A+V+L P ++L + L N+ ++LYA + AS+++ +WM+ V LG SR +F Sbjct: 185 QVLVAIVVLLPLFLLSDKTGLNSHNIGLVLYACVLASMIAPLVWMQAVHRLGPSRTTLFF 244 Query: 279 NLMPVFTVIIAVVALGEQLHGYHAIGGLITLAGVIMAQVFKQRLR 323 NL+P+ T +IA V L EQL YH +GGL+TLAGV++A+ + +R Sbjct: 245 NLLPLVTALIAAVVLDEQLASYHLVGGLLTLAGVVLAERWTTPIR 289 >ref|YP_004704109.1| hypothetical protein PPS_4698 [Pseudomonas putida S16] gb|AEJ15229.1| conserved hypothetical protein [Pseudomonas putida S16] Length = 290 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 149/285 (52%), Positives = 205/285 (71%) Query: 39 FPLGAVLIWAGNTVISKMSAGVIAPEDISFYRWVLAALLMSPFLARPTWAARAQIRPYLG 98 FPL A+LIWAGNTV++KMSAG I P +I FYRW+LAALL +PFL W RA IRP+LG Sbjct: 5 FPLTAILIWAGNTVVTKMSAGAIHPAEIGFYRWLLAALLFTPFLLPAVWRNRAAIRPHLG 64 Query: 99 KILVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPTVGTLAGG 158 K+ VL +LGM L+QSLAYFAA SAT+MGII SLMPL++L LSI L + + G L G Sbjct: 65 KVFVLGVLGMALYQSLAYFAAGITSATNMGIILSLMPLMSLALSIAWLGQRLSYGALLGA 124 Query: 159 ILSLFGLAVLIGRGHPLALFDQGVVTGDLLMLLATIAYGLYGVMLRRWALPLRTWQLLYM 218 ++S FG+ ++ GHP +L QG+ +GDLLML+AT+AY LY +L++W + L QLLY+ Sbjct: 125 LVSFFGVLEVVSAGHPASLLQQGLNSGDLLMLVATLAYALYSFLLKKWQMRLPPMQLLYL 184 Query: 219 QVLMAVVLLFPGYVLGHHSPLTRENLPILLYAGIAASILSQFLWMRGVQYLGASRCAIFV 278 QVL+A+V+L P ++L + L N+ ++LYA + AS+++ +WM+ V LG SR +F Sbjct: 185 QVLVAIVVLLPLFLLSDKTGLNSRNVGLVLYACVLASMIAPLVWMQAVHRLGPSRTTLFF 244 Query: 279 NLMPVFTVIIAVVALGEQLHGYHAIGGLITLAGVIMAQVFKQRLR 323 NL+P+ T +IA V L EQL YH +GGL+TLAGV++A+ + +R Sbjct: 245 NLLPLVTALIAAVVLDEQLARYHLVGGLLTLAGVVLAERWTTPIR 289 >ref|YP_001671130.1| hypothetical protein PputGB1_4910 [Pseudomonas putida GB-1] gb|ABZ00795.1| protein of unknown function DUF6 transmembrane [Pseudomonas putida GB-1] Length = 290 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 148/285 (51%), Positives = 204/285 (71%) Query: 39 FPLGAVLIWAGNTVISKMSAGVIAPEDISFYRWVLAALLMSPFLARPTWAARAQIRPYLG 98 FPL A+LIWAGNTV++KMSAG I P +I FYRW+LAALL +PFL W RA IRP+LG Sbjct: 5 FPLTAILIWAGNTVVTKMSAGAIHPAEIGFYRWLLAALLFTPFLLPAVWRNRAAIRPHLG 64 Query: 99 KILVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPTVGTLAGG 158 K+ VL +LGM ++QSLAYFAA SAT+MGII SLMPL++L LSI L + + G L G Sbjct: 65 KVFVLGVLGMAMYQSLAYFAAGITSATNMGIILSLMPLMSLALSIAWLGQRLSYGALLGA 124 Query: 159 ILSLFGLAVLIGRGHPLALFDQGVVTGDLLMLLATIAYGLYGVMLRRWALPLRTWQLLYM 218 ++S FG+ ++ GHP +L QG+ +GDLLML+AT+AY LY +L++W L L QLLY+ Sbjct: 125 LVSFFGVLEVVSAGHPASLLQQGLNSGDLLMLVATLAYALYSFLLKKWQLRLPPMQLLYL 184 Query: 219 QVLMAVVLLFPGYVLGHHSPLTRENLPILLYAGIAASILSQFLWMRGVQYLGASRCAIFV 278 QVL+A+V+L P ++L + L N+ ++LYA + AS+++ +WM+ V LG SR +F Sbjct: 185 QVLVAIVVLLPLFLLSDKTGLNSHNIGLVLYACVLASMIAPRVWMQAVHRLGPSRTTLFF 244 Query: 279 NLMPVFTVIIAVVALGEQLHGYHAIGGLITLAGVIMAQVFKQRLR 323 NL+P+ T +IA L EQL YH +GGL+TLAGV++A+ + +R Sbjct: 245 NLLPLVTALIAAGVLDEQLASYHLVGGLLTLAGVVLAERWTTPIR 289 >ref|YP_001270035.1| hypothetical protein Pput_4731 [Pseudomonas putida F1] gb|ABQ80851.1| protein of unknown function DUF6, transmembrane [Pseudomonas putida F1] Length = 293 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 204/285 (71%) Query: 39 FPLGAVLIWAGNTVISKMSAGVIAPEDISFYRWVLAALLMSPFLARPTWAARAQIRPYLG 98 FPL A+LIWAGNTV++KMSAG I P +I FYRW+LAALL +PF+ W RA IRP+L Sbjct: 5 FPLTAILIWAGNTVVTKMSAGAIHPAEIGFYRWLLAALLFTPFMLPAVWRNRAAIRPHLT 64 Query: 99 KILVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPTVGTLAGG 158 ++ VL +LGM ++QSLAYFAA SAT+MGII SLMPL++L LSI L + + G L G Sbjct: 65 QVFVLGVLGMAMYQSLAYFAAGITSATNMGIILSLMPLMSLALSIAWLGQRLSYGALLGA 124 Query: 159 ILSLFGLAVLIGRGHPLALFDQGVVTGDLLMLLATIAYGLYGVMLRRWALPLRTWQLLYM 218 ++S FG+ ++ GHP +L QG+ +GDLLML+AT+AY LY +L++W L L QLLY+ Sbjct: 125 VVSFFGVLEVVSAGHPASLLQQGLNSGDLLMLVATLAYALYSFLLKKWQLRLPPMQLLYL 184 Query: 219 QVLMAVVLLFPGYVLGHHSPLTRENLPILLYAGIAASILSQFLWMRGVQYLGASRCAIFV 278 QVL+A+V+L P ++L + L N+ ++LYA + AS+++ +WM+ V LG SR +F Sbjct: 185 QVLVAIVVLLPLFLLSDKTGLNSHNIGLVLYACVLASMIAPLVWMQAVHRLGPSRTTLFF 244 Query: 279 NLMPVFTVIIAVVALGEQLHGYHAIGGLITLAGVIMAQVFKQRLR 323 NL+P+ T +IA V L EQL YH +GGL+TLAGV++A+ + +R Sbjct: 245 NLLPLVTALIAAVVLDEQLASYHLVGGLLTLAGVVLAERWTTPIR 289