BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2941.p (796 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774948.1| major facilitator superfamily permease [Herb... 790 0.0 ref|YP_004751833.1| putative multidrug efflux protein [Collimona... 595 e-167 ref|YP_004751978.1| major facilitator superfamily (MFS) multidru... 555 e-156 ref|NP_903194.1| multidrug efflux protein [Chromobacterium viola... 518 e-144 ref|YP_001526287.1| multidrug efflux protein [Azorhizobium cauli... 511 e-142 >ref|YP_003774948.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ63040.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 446 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 411/446 (92%), Positives = 435/446 (97%) Query: 351 MDSTVISTSLPVLALDMKVDPISLKLALTSYLVSLAVFIPISGWMADRFGSLTIFRTAIC 410 MDSTVISTSLP LALDM VDPISLKLALTSYLVSLAVFIPISGWMADRFGSLTIFR+AIC Sbjct: 1 MDSTVISTSLPALALDMNVDPISLKLALTSYLVSLAVFIPISGWMADRFGSLTIFRSAIC 60 Query: 411 VFMLGSILCGASSTLPQFVAARFLQGIGGAMMVPVGRLVILRSVEKVNLVKALSYLTIPA 470 VFMLGSILCG SSTLPQFVAARFLQGIGGAMMVPVGRLVILRSVEKVNLVKALSYLTIPA Sbjct: 61 VFMLGSILCGVSSTLPQFVAARFLQGIGGAMMVPVGRLVILRSVEKVNLVKALSYLTIPA 120 Query: 471 LFGPVLGPPLGGFITTYFHWRWIFFINIPISILGLYLATRFIPDLKAEQVSRLDIVGFLL 530 LFGPVLGPPLGGFITTYFHWRWIFFINIPISILGLYLATRFIPDLKAEQV+ LD+ GFLL Sbjct: 121 LFGPVLGPPLGGFITTYFHWRWIFFINIPISILGLYLATRFIPDLKAEQVAPLDLKGFLL 180 Query: 531 SALGCSLLMMGLATSGRHLVSGDISLACVVAGVLFLCAYVWHARRATAPLIDLALLKIPT 590 SALGCSLLMMGLAT+GRHLVSG+++L CV+AG++FL AYVWHARRA+APLIDLALLKIPT Sbjct: 181 SALGCSLLMMGLATAGRHLVSGEVALTCVLAGLVFLAAYVWHARRASAPLIDLALLKIPT 240 Query: 591 LRAGVFGGSLYRVGIGAIPFLLPLMLQLGFGYTPFHSGLLTCASAAGAMFMKTIAARFLR 650 LRAGVFGGS YRVGIGAIPFLLPLMLQLGFGYTPFHSG+LTCASAAGAMFMKTIAARFLR Sbjct: 241 LRAGVFGGSFYRVGIGAIPFLLPLMLQLGFGYTPFHSGMLTCASAAGAMFMKTIAARFLR 300 Query: 651 RYGFRRVLLVNGALGVLGLWALATFTPQTPYLVMLIILLVGGCFRSLQFTSLNAISYADV 710 RYGFRRVLLVNGALGVLGLWA+ATFTPQTPYL+M++ILL+GGCFRSLQFTSLNAISYADV Sbjct: 301 RYGFRRVLLVNGALGVLGLWAIATFTPQTPYLLMVVILLIGGCFRSLQFTSLNAISYADV 360 Query: 711 DKVRLSQATSMASVAQQLSIGMGVVLAGFALQMSNELQGHATLVAQDFWPAFLVVGAVSA 770 DK+RLSQATSMASVAQQLSIGMGVVLAGFALQMSNE+QGHATLVAQDFWPAFLVVGAV+A Sbjct: 361 DKLRLSQATSMASVAQQLSIGMGVVLAGFALQMSNEIQGHATLVAQDFWPAFLVVGAVAA 420 Query: 771 LALLMLRQLPPNAGAEMAGQQENKPA 796 ALLMLRQLP +AGAEMAG+ +N+PA Sbjct: 421 CALLMLRQLPHDAGAEMAGRDDNRPA 446 >ref|YP_004751833.1| putative multidrug efflux protein [Collimonas fungivorans Ter331] gb|AEK61010.1| putative multidrug efflux protein [Collimonas fungivorans Ter331] Length = 464 Score = 595 bits (1534), Expect = e-167, Method: Composition-based stats. Identities = 308/462 (66%), Positives = 385/462 (83%) Query: 330 MPIPRTFIIPLIVACALFMEQMDSTVISTSLPVLALDMKVDPISLKLALTSYLVSLAVFI 389 M I R F+ PLIVACALFME MDSTVI+TSLP++A DM PI+LKLA+TSYLVSLAVFI Sbjct: 1 MAISRVFLTPLIVACALFMENMDSTVIATSLPMMARDMGESPIALKLAMTSYLVSLAVFI 60 Query: 390 PISGWMADRFGSLTIFRTAICVFMLGSILCGASSTLPQFVAARFLQGIGGAMMVPVGRLV 449 P+SGWMADRFG+ T+FR+AI VFMLGSILCG S TL QFVAARFLQG+GGAMMVPVGRLV Sbjct: 61 PVSGWMADRFGARTVFRSAIGVFMLGSILCGMSDTLAQFVAARFLQGVGGAMMVPVGRLV 120 Query: 450 ILRSVEKVNLVKALSYLTIPALFGPVLGPPLGGFITTYFHWRWIFFINIPISILGLYLAT 509 ILR+ K LV+ALSYLTIPAL GPV+GPPLGGFITTYFHWRWIFFIN+PISILG+YLAT Sbjct: 121 ILRTTTKAELVRALSYLTIPALLGPVIGPPLGGFITTYFHWRWIFFINVPISILGIYLAT 180 Query: 510 RFIPDLKAEQVSRLDIVGFLLSALGCSLLMMGLATSGRHLVSGDISLACVVAGVLFLCAY 569 R+I +L+++ LD +GFLLSA+GCS LM GLA++GRHLV+GD+SL CV G + L AY Sbjct: 181 RYIENLRSDDTVPLDWIGFLLSAIGCSTLMFGLASAGRHLVAGDVSLICVAVGTVSLLAY 240 Query: 570 VWHARRATAPLIDLALLKIPTLRAGVFGGSLYRVGIGAIPFLLPLMLQLGFGYTPFHSGL 629 VWHA R PLI+L LL+IPTLR VFGGSL+R+G+GA+PFLLPL+ QLGFG TPF SGL Sbjct: 241 VWHAFRTPHPLINLRLLQIPTLRMNVFGGSLFRIGVGALPFLLPLLFQLGFGLTPFQSGL 300 Query: 630 LTCASAAGAMFMKTIAARFLRRYGFRRVLLVNGALGVLGLWALATFTPQTPYLVMLIILL 689 LTCASAAGA+F+KT+ L+++GFR VL+ N LG L + A +P++ ++++LL Sbjct: 301 LTCASAAGAIFVKTMTTTVLKKFGFRSVLIYNTLLGALSMAAFGVLKADSPHVFIILMLL 360 Query: 690 VGGCFRSLQFTSLNAISYADVDKVRLSQATSMASVAQQLSIGMGVVLAGFALQMSNELQG 749 +GGC RS+QFTSLNAI+YA++D+ ++SQATS+ SVAQQL+IG+GV + GFALQ+SN++QG Sbjct: 361 LGGCVRSMQFTSLNAIAYAEIDQRQMSQATSLTSVAQQLAIGLGVTVGGFALQVSNQVQG 420 Query: 750 HATLVAQDFWPAFLVVGAVSALALLMLRQLPPNAGAEMAGQQ 791 HAT+V+ DFWPAFL++ V+ +L +L P+AGAE++G++ Sbjct: 421 HATIVSADFWPAFLLIALVALASLPFALKLQPDAGAELSGRR 462 >ref|YP_004751978.1| major facilitator superfamily (MFS) multidrug efflux pump [Collimonas fungivorans Ter331] gb|AEK61155.1| major facilitator superfamily (MFS) multidrug efflux pump [Collimonas fungivorans Ter331] Length = 470 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 283/465 (60%), Positives = 364/465 (78%), Gaps = 3/465 (0%) Query: 332 IPRTFIIPLIVACALFMEQMDSTVISTSLPVLALDMKVDPISLKLALTSYLVSLAVFIPI 391 +PRT +IPLIVACALFME MD+TVI+TSLPVLA D+ DP++LKLALTSY+V L VFIPI Sbjct: 9 VPRTLLIPLIVACALFMENMDATVIATSLPVLARDLGQDPLTLKLALTSYVVGLGVFIPI 68 Query: 392 SGWMADRFGSLTIFRTAICVFMLGSILCGASSTLPQFVAARFLQGIGGAMMVPVGRLVIL 451 SGW+ADRFG+ T+FR AI VF+ GS++C ASS+L FVAARFLQGIGGAMMVPVGR+VI Sbjct: 69 SGWVADRFGARTVFRAAILVFLSGSLMCAASSSLAAFVAARFLQGIGGAMMVPVGRIVIF 128 Query: 452 RSVEKVNLVKALSYLTIPALFGPVLGPPLGGFITTYFHWRWIFFINIPISILGLYLATRF 511 RSV + +LVKA+SYLTIP+ GPV+GPPLGGFITTYFHWRWIF IN+PISILG+YLA+R+ Sbjct: 129 RSVPRTDLVKAISYLTIPSQLGPVIGPPLGGFITTYFHWRWIFLINVPISILGMYLASRY 188 Query: 512 IPDLKAEQVSRLDIVGFLLSALGCSLLMMGLATSGRHLVSGDISLACVVAGVLFLCAYVW 571 I + +++ + LD+ GF+LSA+G +LLM+GL+ L++ + + A V G L L Y+ Sbjct: 189 IENYRSDDLQPLDMKGFVLSAIGSTLLMLGLSLIDGELLAPEWAFAMCVLGGLTLYVYLL 248 Query: 572 HARRATAPLIDLALLKIPTLRAGVFGGSLYRVGIGAIPFLLPLMLQLGFGYTPFHSGLLT 631 HARR PL+DL LL+IPT RA V GGSL+R+G+GA+PFLLPL LQ+GFG FH+G +T Sbjct: 249 HARREPFPLLDLRLLRIPTFRASVIGGSLFRIGLGAVPFLLPLALQVGFGMNAFHAGTIT 308 Query: 632 CASAAGAMFMKTIAARFLRRYGFRRVLLVNGALGVLGLWALATFTPQTPYLVMLIILLVG 691 CASA GA+FMK I LRRYGFR VL+ N L L L + FTP TPYLVM+ ++L+G Sbjct: 309 CASAFGAIFMKAIGTSVLRRYGFRSVLIWNAVLAGLALASYGLFTPTTPYLVMMAVVLLG 368 Query: 692 GCFRSLQFTSLNAISYADVDKVRLSQATSMASVAQQLSIGMGVVLAGFALQMSNELQGHA 751 G F S+QFT LN ++YAD+D +S+ATS+ASV QQ+S+G+GV + G A+ +S+ LQGH+ Sbjct: 369 GFFPSMQFTCLNTMAYADLDSADVSRATSLASVVQQISLGLGVTIGGLAVHLSSRLQGHS 428 Query: 752 TLVAQDFWPAFLVVGAVSALALLMLRQLPPNAGAEMAGQQENKPA 796 T+VA DFWPAF+V+G S ++ + R LP NAG+ + G +KPA Sbjct: 429 TIVAADFWPAFIVIGLFSLASIPVTRHLPLNAGSALTG---HKPA 470 >ref|NP_903194.1| multidrug efflux protein [Chromobacterium violaceum ATCC 12472] gb|AAQ61186.1| probable multidrug efflux protein [Chromobacterium violaceum ATCC 12472] Length = 457 Score = 518 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 288/456 (63%), Positives = 357/456 (78%) Query: 337 IIPLIVACALFMEQMDSTVISTSLPVLALDMKVDPISLKLALTSYLVSLAVFIPISGWMA 396 + PLIVA ALFME MD+TVISTSLPV+A D+ VDPISLKLALTSYLVSLAVFIPISGWMA Sbjct: 2 LTPLIVATALFMENMDATVISTSLPVIAQDLGVDPISLKLALTSYLVSLAVFIPISGWMA 61 Query: 397 DRFGSLTIFRTAICVFMLGSILCGASSTLPQFVAARFLQGIGGAMMVPVGRLVILRSVEK 456 DRFG+ IFR+AI VFMLGS+LC A+ +L FV ARFLQGIGGAMMVPVGRLVILR+++K Sbjct: 62 DRFGARRIFRSAILVFMLGSLLCAATGSLHGFVLARFLQGIGGAMMVPVGRLVILRTIDK 121 Query: 457 VNLVKALSYLTIPALFGPVLGPPLGGFITTYFHWRWIFFINIPISILGLYLATRFIPDLK 516 +LV+ALSYLT+PAL GPV+GPPLGGFI+TYFHWRWIF INIPI +LGL LA RFI +LK Sbjct: 122 ADLVRALSYLTVPALLGPVIGPPLGGFISTYFHWRWIFLINIPIGLLGLALAGRFIANLK 181 Query: 517 AEQVSRLDIVGFLLSALGCSLLMMGLATSGRHLVSGDISLACVVAGVLFLCAYVWHARRA 576 ++V RLD GFLL+ G S+LM+GLAT G+H++S S+ G L AY+ H R+ Sbjct: 182 EDEVPRLDWWGFLLTGTGLSMLMLGLATEGKHMLSATASIWLSALGAALLLAYLRHYRKQ 241 Query: 577 TAPLIDLALLKIPTLRAGVFGGSLYRVGIGAIPFLLPLMLQLGFGYTPFHSGLLTCASAA 636 T PL+DL+LL++PT AGV GG ++R+GIG IPFLLPLMLQLGFG++PF SGLLTC++A Sbjct: 242 THPLLDLSLLRLPTFNAGVVGGFMFRIGIGTIPFLLPLMLQLGFGFSPFESGLLTCSTAM 301 Query: 637 GAMFMKTIAARFLRRYGFRRVLLVNGALGVLGLWALATFTPQTPYLVMLIILLVGGCFRS 696 GAM MKTI A+ L+RYGFRRVL+VN L + + F TP+ ++L++ ++GGC RS Sbjct: 302 GAMGMKTIVAKVLQRYGFRRVLVVNSILAGCSVAVYSLFQADTPHWLLLLVFVLGGCMRS 361 Query: 697 LQFTSLNAISYADVDKVRLSQATSMASVAQQLSIGMGVVLAGFALQMSNELQGHATLVAQ 756 LQFTSLNAI++ADVDK RLS ATS++SVAQQL+ G GV + FALQ LQGH L A Sbjct: 362 LQFTSLNAITFADVDKDRLSHATSLSSVAQQLAAGFGVTVGAFALQSVAWLQGHQQLTAV 421 Query: 757 DFWPAFLVVGAVSALALLMLRQLPPNAGAEMAGQQE 792 DF AFL++G ++ L+ L +L +AG +++ E Sbjct: 422 DFGHAFLIMGGLTMLSSLQFLKLERDAGRQVSAGHE 457 >ref|YP_001526287.1| multidrug efflux protein [Azorhizobium caulinodans ORS 571] dbj|BAF89369.1| putative multidrug efflux protein [Azorhizobium caulinodans ORS 571] Length = 483 Score = 511 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 275/469 (58%), Positives = 350/469 (74%), Gaps = 1/469 (0%) Query: 328 LTMPIPRTFIIPLIVACALFMEQMDSTVISTSLPVLALDMKVDPISLKLALTSYLVSLAV 387 L +PR ++PLIVACALFMEQ+DSTVISTSLP +A + DP++LKLALTSYL+SLAV Sbjct: 2 LASALPRHILVPLIVACALFMEQVDSTVISTSLPAIAASLHDDPVALKLALTSYLLSLAV 61 Query: 388 FIPISGWMADRFGSLTIFRTAICVFMLGSILCGASSTLPQFVAARFLQGIGGAMMVPVGR 447 FIP SGW ADRFG+ T+FR+AI +F LGSILCG S++L FV R +QG+GGAMMVPVGR Sbjct: 62 FIPASGWCADRFGARTVFRSAIVIFTLGSILCGLSTSLLDFVIYRIIQGMGGAMMVPVGR 121 Query: 448 LVILRSVEKVNLVKALSYLTIPALFGPVLGPPLGGFITTYFHWRWIFFINIPISILGLYL 507 LVILRSV K +V AL++LTIPAL GPV+GPPLGGFITTYF WR IFFIN+PI ILG+ L Sbjct: 122 LVILRSVPKSEIVSALAWLTIPALLGPVMGPPLGGFITTYFDWRLIFFINVPIGILGIIL 181 Query: 508 ATRFIPDLKAEQVSRLDIVGFLLSALGCSLLMMGLATSGRHLVSGDISLACVVAGVLFLC 567 ATRFI +++ E V LD+ G +LS +G S L+ GLA G+HLV + G++ L Sbjct: 182 ATRFIENVREEDVPPLDLHGLVLSGIGLSGLVFGLAVLGQHLVPYWAAAGVTAIGIVALG 241 Query: 568 AYVWHARRATAPLIDLALLKIPTLRAGVFGGSLYRVGIGAIPFLLPLMLQLGFGYTPFHS 627 YV HARR ++DL+LL+IPT RAGV GGSL+R+G+GA+PF LPLMLQL FG +PF S Sbjct: 242 FYVRHARRTPHAVLDLSLLRIPTFRAGVVGGSLFRIGVGALPFALPLMLQLTFGLSPFAS 301 Query: 628 GLLTCASAAGAMFMKTIAARFLRRYGFRRVLLVNGALGVLGLWALATFTPQTPYLVMLII 687 G+LT AS+AGA+ MKT A LRR+GF RVL+VN + + A A FTP+TP+ ++ + Sbjct: 302 GMLTFASSAGALVMKTTARPILRRFGFWRVLVVNALISSAFIGANALFTPETPHAAIVAV 361 Query: 688 LLVGGCFRSLQFTSLNAISYADVDKVRLSQATSMASVAQQLSIGMGVVLAGFALQMSNEL 747 LL+GG FRSL+FT++NA+SYADV + +S+ATS SVAQQ+S+ +GV L G L+ Sbjct: 362 LLMGGFFRSLEFTAINALSYADVSQPEMSRATSFVSVAQQVSLSLGVALVGMVLEAMRSA 421 Query: 748 QGHATLVAQDFWPAFLVVGAVSALALLMLRQLPPNAGAEMAGQQENKPA 796 +G L DF PAFL+V VSALA+ LP +AGAE++G +E KP+ Sbjct: 422 RGETALQLADFTPAFLIVAGVSALAVFSFMNLPKDAGAELSGHKE-KPS 469