BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2939.p (526 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774946.1| NodT family protein [Herbaspirillum seropedi... 683 0.0 ref|YP_004751837.1| outer membrane protein [Collimonas fungivora... 468 e-129 ref|YP_560995.1| RND efflux system outer membrane lipoprotein [B... 416 e-114 ref|ZP_06840425.1| RND efflux system, outer membrane lipoprotein... 415 e-114 ref|YP_901870.1| RND efflux system outer membrane lipoprotein [P... 412 e-113 >ref|YP_003774946.1| NodT family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63038.1| RND efflux system, outer membrane lipoprotein, NodT family protein [Herbaspirillum seropedicae SmR1] Length = 507 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 454/515 (88%), Positives = 477/515 (92%), Gaps = 15/515 (2%) Query: 5 MTQQDLFKLKPLLTVLLASFALAACSVGPDYVRPQMDTGPAVFKEGQNWKPAQPRDLAAD 64 MTQQDLFKLKPLL +L+AS ALAACSVGPDYVRPQMDTGPA+FKEGQNWKPAQPRDL AD Sbjct: 1 MTQQDLFKLKPLLAMLVASLALAACSVGPDYVRPQMDTGPAIFKEGQNWKPAQPRDLVAD 60 Query: 65 GKWWEMFGDPQLNALAEQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLAASAGASRG 124 GKWWEMFGDPQLNAL QVDISNQNLALAEANFRSAVALVQSSRSAYSPTL+ASAGAS Sbjct: 61 GKWWEMFGDPQLNALVAQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLSASAGAS-- 118 Query: 125 RSGSAGSSSSSSNSANSSNSSGNSSSSGSVRNSYTFSLTASWEADIWGKVRRDVESSQAS 184 SS ++ SS+++ + SS+GSVRNSYTFSLTA+WEADIWGKVRRDVESSQAS Sbjct: 119 -------RGSSGSAGASSSNAASGSSAGSVRNSYTFSLTAAWEADIWGKVRRDVESSQAS 171 Query: 185 AQASAADLAGARLSAQAQLAQNYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGLVA 244 AQASAADLA ARLSAQAQ+AQNYLQLRVLDAQQQLLE+TVQAY+RSLQV QNQYAAG+VA Sbjct: 172 AQASAADLAAARLSAQAQVAQNYLQLRVLDAQQQLLEETVQAYERSLQVAQNQYAAGMVA 231 Query: 245 KSDVIQAQTQLKSAQASALDNGVTRAQVEHAIALLVGKTPAEFSLPRAPLTAVAPPVPQG 304 KSDVIQAQTQLKSAQASALDNGVTRAQVEHAIALLVGKTPA+F+LPRAPL AVAPPVPQG Sbjct: 232 KSDVIQAQTQLKSAQASALDNGVTRAQVEHAIALLVGKTPAQFALPRAPLAAVAPPVPQG 291 Query: 305 VPSMLLERRPDVAAAERRVASANAKIGVAKAAYFPSLTLSASGGYQSSTFADWFTLPGRV 364 VPSMLLERRPDVAAAERRVASANAKIGVAKAAYFPSLTLSASGGYQSSTFADWFTLPGRV Sbjct: 292 VPSMLLERRPDVAAAERRVASANAKIGVAKAAYFPSLTLSASGGYQSSTFADWFTLPGRV 351 Query: 365 WSLGPQLAQTIFDGGARAAATDQAIATYDGTVATYKQTVLTAFQDVEDNLAALRILEQEA 424 WSLGPQLAQTIFDGGARAAATDQAIATYDGTVATYKQTVLTAFQ+VEDNLAALRILEQEA Sbjct: 352 WSLGPQLAQTIFDGGARAAATDQAIATYDGTVATYKQTVLTAFQEVEDNLAALRILEQEA 411 Query: 425 AVQGEALQAARQAVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRMAASVLLA 484 AVQGEALQAARQAVTLV NQYKAGTVSYVNVITAQATALSAEL+SLNILNRRMAASVLLA Sbjct: 412 AVQGEALQAARQAVTLVNNQYKAGTVSYVNVITAQATALSAELSSLNILNRRMAASVLLA 471 Query: 485 KALGGGWDGHSLDDLGTIGAADGRQGQGAEGKRGL 519 KALGGGWD SLDDLG++ Q Q AE + L Sbjct: 472 KALGGGWDERSLDDLGSL------QQQSAEKAKAL 500 >ref|YP_004751837.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61014.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 501 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 302/468 (64%), Positives = 362/468 (77%), Gaps = 17/468 (3%) Query: 31 VGPDYVRPQMDTGPAVFKEGQNWKPAQPRDLAADGKWWEMFGDPQLNALAEQVDISNQNL 90 VGPDYVRP PA FKE ++WK A P+D GKWWE++ DPQLNAL EQV+ISNQNL Sbjct: 33 VGPDYVRPAT-VAPAAFKEMKDWKTATPQDQELHGKWWEIYQDPQLNALVEQVNISNQNL 91 Query: 91 ALAEANFRSAVALVQSSRSAYSPTLAASAGASRGRSGSAGSSSSSSNSANSSNSSGNSSS 150 A AEA FR A ALV S+RS+Y PT++A+ A+ + SS + S+ Sbjct: 92 AQAEAQFRQAKALVDSARSSYFPTVSANVSAT----------------RSGGRSSSSLST 135 Query: 151 SGSVRNSYTFSLTASWEADIWGKVRRDVESSQASAQASAADLAGARLSAQAQLAQNYLQL 210 GSV + L+ASWE D+WG++ R VE++QASAQASAADL ARLSAQ+ LAQNYLQL Sbjct: 136 GGSVNTTDALGLSASWEPDLWGRIGRTVEANQASAQASAADLQVARLSAQSTLAQNYLQL 195 Query: 211 RVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGLVAKSDVIQAQTQLKSAQASALDNGVTRA 270 RVLD QQ LL DTV AYQ+SLQ+TQNQYA G+VA+SDVIQAQTQLK AQA ALDNGV+R+ Sbjct: 196 RVLDLQQGLLNDTVAAYQKSLQLTQNQYAVGVVARSDVIQAQTQLKGAQAQALDNGVSRS 255 Query: 271 QVEHAIALLVGKTPAEFSLPRAPLTAVAPPVPQGVPSMLLERRPDVAAAERRVASANAKI 330 Q+EHAIALL G+ + FSL APL AV P +P GVPS LLERRPDV+AAER A+ANA+I Sbjct: 256 QLEHAIALLTGQAASTFSLAPAPLVAVLPTIPVGVPSTLLERRPDVSAAERLAAAANAQI 315 Query: 331 GVAKAAYFPSLTLSASGGYQSSTFADWFTLPGRVWSLGPQLAQTIFDGGARAAATDQAIA 390 GVAKAAYFP+LTLSASGG+QS++F++W T+P R+WSLGP LA T+FDGGAR A + QAIA Sbjct: 316 GVAKAAYFPNLTLSASGGFQSNSFSNWLTVPNRIWSLGPALAATLFDGGARRAQSGQAIA 375 Query: 391 TYDGTVATYKQTVLTAFQDVEDNLAALRILEQEAAVQGEALQAARQAVTLVTNQYKAGTV 450 YD +VA YKQ VLT+FQ+VEDNLAALRILEQEAAVQ E +Q A A+ L+ NQYKAGTV Sbjct: 376 AYDASVAVYKQAVLTSFQEVEDNLAALRILEQEAAVQAETVQFAHHALELIMNQYKAGTV 435 Query: 451 SYVNVITAQATALSAELTSLNILNRRMAASVLLAKALGGGWDGHSLDD 498 +Y +V+TAQA A +A+L++LNI NRR AASVLL KALGGGW+ L D Sbjct: 436 NYTSVVTAQAIAFNADLSALNIQNRRFAASVLLIKALGGGWNQAELPD 483 >ref|YP_560995.1| RND efflux system outer membrane lipoprotein [Burkholderia xenovorans LB400] gb|ABE32943.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia xenovorans LB400] Length = 523 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 275/470 (58%), Positives = 341/470 (72%), Gaps = 13/470 (2%) Query: 29 CSVGPDYVRPQMDTGPAVFKEGQ-NWKPAQPRDLAADGKWWEMFGDPQLNALAEQVDISN 87 C VGPDY RP T PA +KE WK A+P D G WW ++ DPQLNAL ++++ +N Sbjct: 32 CVVGPDYKRPAA-TIPASYKEAAPGWKVAEPADQHDRGDWWTIYEDPQLNALEDRLNTAN 90 Query: 88 QNLALAEANFRSAVALVQSSRSAYSPTLAASAGASRGRSGSAGSSSSSSNSANSSNSSGN 147 Q +A A +R A ALV +R+AY PT+ ASAGA+ S N ++SS SS Sbjct: 91 QTVAQFAAAYRQARALVGEARAAYFPTIGASAGAT-----------RSGNGSSSSRSSTA 139 Query: 148 SSSSGSVRNSYTFSLTASWEADIWGKVRRDVESSQASAQASAADLAGARLSAQAQLAQNY 207 ++S + NS+ L ASWE D+WG V R V S +A Q++AADLA ARLSAQA LAQ Y Sbjct: 140 TTSRSGISNSFNVQLDASWEPDLWGSVTRSVNSQKAGQQSAAADLANARLSAQATLAQTY 199 Query: 208 LQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGLVAKSDVIQAQTQLKSAQASALDNGV 267 LR LD+ Q+LL+DTV AYQRSLQ+TQNQYAAG+ A+SDVIQAQTQL+SAQA+A+DNGV Sbjct: 200 FSLRALDSTQKLLDDTVAAYQRSLQLTQNQYAAGVAARSDVIQAQTQLQSAQAAAIDNGV 259 Query: 268 TRAQVEHAIALLVGKTPAEFSLPRAPLTAVAPPVPQGVPSMLLERRPDVAAAERRVASAN 327 RAQ EHAIA+LVG+ + FS+P PLTA P VP +PS LLERRPD+A+AER+ A+AN Sbjct: 260 QRAQDEHAIAVLVGEPASTFSIPPMPLTATPPAVPAQMPSALLERRPDIASAERKAAAAN 319 Query: 328 AKIGVAKAAYFPSLTLSASGGYQSSTFADWFTLPGRVWSLGPQLAQTIFDGGARAAATDQ 387 +IGVA AA+FPSLTLSASGG+++S F+ T P R W+LGPQLA T+FD G R A TD Sbjct: 320 EQIGVAIAAFFPSLTLSASGGFENSVFSQLLTAPSRFWTLGPQLAATLFDAGLRQAQTDA 379 Query: 388 AIATYDGTVATYKQTVLTAFQDVEDNLAALRILEQEAAVQGEALQAARQAVTLVTNQYKA 447 A A YDG VA+Y+QTVL AFQDVEDNLA+ RILEQE VQ +A+ +ARQA+ +VTN+YKA Sbjct: 380 ARAAYDGDVASYRQTVLAAFQDVEDNLASQRILEQEIVVQRQAVDSARQALAIVTNEYKA 439 Query: 448 GTVSYVNVITAQATALSAELTSLNILNRRMAASVLLAKALGGGWDGHSLD 497 GTV YVNV+TAQ TA +AE NI +RM +SV L KALGGGWD ++ Sbjct: 440 GTVGYVNVLTAQTTAFTAEQKLENIAGQRMVSSVGLVKALGGGWDASQMN 489 >ref|ZP_06840425.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. Ch1-1] gb|EFG72145.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. Ch1-1] Length = 521 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 275/470 (58%), Positives = 339/470 (72%), Gaps = 13/470 (2%) Query: 29 CSVGPDYVRPQMDTGPAVFKEGQ-NWKPAQPRDLAADGKWWEMFGDPQLNALAEQVDISN 87 C VGPDY RP PA +KE WK A+P D G WW ++ DPQLNAL ++++ +N Sbjct: 32 CVVGPDYKRPAAAI-PASYKEAAPGWKVAEPADQHDRGDWWTIYEDPQLNALEDRLNTAN 90 Query: 88 QNLALAEANFRSAVALVQSSRSAYSPTLAASAGASRGRSGSAGSSSSSSNSANSSNSSGN 147 Q +A A +R A ALV +R+AY PT+ ASAGA+ S N ++SS SS Sbjct: 91 QTVAQFAAAYRQARALVGEARAAYFPTIGASAGAT-----------RSGNGSSSSGSSSA 139 Query: 148 SSSSGSVRNSYTFSLTASWEADIWGKVRRDVESSQASAQASAADLAGARLSAQAQLAQNY 207 ++S V NS+ L ASWE D+WG V R V S +A Q +AADLA ARLSAQA LAQ Y Sbjct: 140 TTSRSGVSNSFNVQLDASWEPDLWGSVTRSVNSQKAGQQGAAADLANARLSAQATLAQTY 199 Query: 208 LQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGLVAKSDVIQAQTQLKSAQASALDNGV 267 LR LD+ Q+LL+DTV AYQRSLQ+TQNQYAAG+ A+SDVIQAQTQL+SAQA+A+DNGV Sbjct: 200 FSLRALDSTQKLLDDTVAAYQRSLQLTQNQYAAGVAARSDVIQAQTQLQSAQAAAIDNGV 259 Query: 268 TRAQVEHAIALLVGKTPAEFSLPRAPLTAVAPPVPQGVPSMLLERRPDVAAAERRVASAN 327 RAQ EHAIA+LVG+ + FS+P PLTA P VP +PS LLERRPD+A+AER+ A+AN Sbjct: 260 QRAQDEHAIAVLVGEPASTFSIPPMPLTATPPAVPAQMPSALLERRPDIASAERKAAAAN 319 Query: 328 AKIGVAKAAYFPSLTLSASGGYQSSTFADWFTLPGRVWSLGPQLAQTIFDGGARAAATDQ 387 +IGVA AA+FPSLTLSASGG+++S F+ T P R W+LGPQLA T+FD G R A TD Sbjct: 320 EQIGVAIAAFFPSLTLSASGGFENSVFSQLLTAPSRFWTLGPQLAATLFDAGLRQAQTDA 379 Query: 388 AIATYDGTVATYKQTVLTAFQDVEDNLAALRILEQEAAVQGEALQAARQAVTLVTNQYKA 447 A A YDG VA+Y+QTVL AFQDVEDNLA+ RILEQE VQ +A+ +ARQA+ +VTN+YKA Sbjct: 380 ARAAYDGDVASYRQTVLAAFQDVEDNLASQRILEQEIVVQRQAVDSARQALAIVTNEYKA 439 Query: 448 GTVSYVNVITAQATALSAELTSLNILNRRMAASVLLAKALGGGWDGHSLD 497 GTV YVNV+TAQ TA +AE NI +RM +SV L KALGGGWD ++ Sbjct: 440 GTVGYVNVLTAQTTAFTAEQKLENIAGQRMVSSVGLVKALGGGWDASQMN 489 >ref|YP_901870.1| RND efflux system outer membrane lipoprotein [Pelobacter propionicus DSM 2379] gb|ABK99812.1| RND efflux system, outer membrane lipoprotein, NodT family [Pelobacter propionicus DSM 2379] Length = 471 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 274/484 (56%), Positives = 354/484 (73%), Gaps = 22/484 (4%) Query: 13 LKPLLTVLLASFALAACSVGPDYVRPQMDTGPAVFKEGQNWKPAQPRDLAADGKWWEMFG 72 +KP+L V +A+ LA CSVGPDYVRP PA F E W+ AQPRD A G WW ++ Sbjct: 1 MKPILPVAMATLLLA-CSVGPDYVRPTAVV-PAAFGESAPWRVAQPRDNAQRGPWWHIYE 58 Query: 73 DPQLNALAEQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLAASAGASRGRSGSAGSS 132 DP+LN L EQV +SNQ+L AEA FR A ALVQ++RS Y P L A R RS Sbjct: 59 DPRLNGLMEQVTLSNQSLKAAEAQFRQARALVQAARSGYHPQLHGGASLDRSRS------ 112 Query: 133 SSSSNSANSSNSSGNSSSSGSVRNSYTFSLTASWEADIWGKVRRDVESSQASAQASAADL 192 S +SGS +Y S ASWE D+WG+VRRDVE+S+A AQASAADL Sbjct: 113 --------------YSKNSGSTSTTYLLSADASWELDLWGRVRRDVEASRAEAQASAADL 158 Query: 193 AGARLSAQAQLAQNYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGLVAKSDVIQAQ 252 RLS QA+L +Y QLR +DAQ++LL++TV +Y++ L++T+N++AAG+ + +DV+QA+ Sbjct: 159 ESLRLSIQAELVGDYFQLRTIDAQKRLLDETVSSYEQYLELTRNRHAAGVASPADVLQAE 218 Query: 253 TQLKSAQASALDNGVTRAQVEHAIALLVGKTPAEFSLPRAPLTAVAPPVPQGVPSMLLER 312 TQL+++QA A+D GV RAQ EHAIALL+G+ PAEF+L PL ++ PP P G+PS LLER Sbjct: 219 TQLRNSQAQAIDLGVERAQREHAIALLIGRAPAEFTLTPIPLDSIPPPSPPGLPSRLLER 278 Query: 313 RPDVAAAERRVASANAKIGVAKAAYFPSLTLSASGGYQSSTFADWFTLPGRVWSLGPQLA 372 RPD+AAAERRVA+ANA+IGVA AAYFP++TLS+S G+ SS+ ++W + PG VW+LG +A Sbjct: 279 RPDIAAAERRVAAANARIGVATAAYFPAITLSSSAGFASSSLSNWLSWPGHVWALGSAIA 338 Query: 373 QTIFDGGARAAATDQAIATYDGTVATYKQTVLTAFQDVEDNLAALRILEQEAAVQGEALQ 432 QT++DGG R A D+A AT++ TVA Y+QTVLTAFQ+VEDNLAALRILEQEAAVQ +AL+ Sbjct: 339 QTVYDGGLRGAQVDEARATHEATVANYRQTVLTAFQEVEDNLAALRILEQEAAVQDQALR 398 Query: 433 AARQAVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRMAASVLLAKALGGGWD 492 AARQ++ + TNQY+AG V Y+NVI AQ TAL E S++++ RRMAASV L K +GGGWD Sbjct: 399 AARQSLVITTNQYRAGIVGYLNVIVAQTTALELERDSIDLMGRRMAASVNLVKGIGGGWD 458 Query: 493 GHSL 496 L Sbjct: 459 AADL 462