BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2936.p (523 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774943.1| RND family efflux transporter MFP subunit [H... 679 0.0 ref|YP_004751840.1| putative resistance transmembrane protein [C... 454 e-125 ref|ZP_07673605.1| multidrug RND efflux transporter, membrane fu... 398 e-108 ref|YP_001892710.1| efflux transporter, RND family, MFP subunit ... 397 e-108 emb|CCA86796.1| multidrug efflux system, subunit A [Ralstonia sy... 382 e-104 >ref|YP_003774943.1| RND family efflux transporter MFP subunit [Herbaspirillum seropedicae SmR1] gb|ADJ63035.1| efflux transporter, RND family, MFP subunit protein [Herbaspirillum seropedicae SmR1] Length = 466 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 384/429 (89%), Positives = 403/429 (93%), Gaps = 6/429 (1%) Query: 78 FAGPAMPVGVAVARVQNVDVFLNGLGAVTPTATATVRARVDGQLMKLHYKEGQVVKAGEL 137 F MPVGVA AR+Q+V+VFLNGLGAVTPTATATVRARVDGQLMKLHYKEGQVVKAG+L Sbjct: 27 FGPQTMPVGVAKARLQDVNVFLNGLGAVTPTATATVRARVDGQLMKLHYKEGQVVKAGDL 86 Query: 138 LAEIDPRSLQAALTQAEGQLARDRALLASARLDLKRYQTLLSQDSIASQQVDTQAALVKQ 197 LAEIDPRSLQAALTQAEGQLARDRALLASARLDLKRYQTLL+QDSIASQQVDTQ ALVKQ Sbjct: 87 LAEIDPRSLQAALTQAEGQLARDRALLASARLDLKRYQTLLAQDSIASQQVDTQVALVKQ 146 Query: 198 YEGTVKADEGSVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDTNGLVIITQLQPI 257 YEGTVKADEG+VASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDTNGLVIITQLQPI Sbjct: 147 YEGTVKADEGNVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDTNGLVIITQLQPI 206 Query: 258 TAIFSIPEDNIPKVLQQLQAGKKLPTDAWDRDQKNKLASGMLLTIDNQVDATTGTVKLKA 317 TAIFSIPEDNIPKVLQQLQ+G+KLP AWDR+QKNKLA G+LLTIDN VDATTGTVKLKA Sbjct: 207 TAIFSIPEDNIPKVLQQLQSGRKLPAQAWDREQKNKLADGVLLTIDNVVDATTGTVKLKA 266 Query: 318 QFPNTDYALFPSQFVNIRLQLKTEEGAIVIPTAAIQRGSKGLFVYVVKEDNTVTVRPVKT 377 QFPNTDYALFPSQFVNIRLQL TE+GA VIPTAAIQRGSKGLFVYVVK+D++VTVRPVKT Sbjct: 267 QFPNTDYALFPSQFVNIRLQLNTEQGATVIPTAAIQRGSKGLFVYVVKDDSSVTVRPVKT 326 Query: 378 GPVQDDQTVITEGIAAGETVVIDGIDRLREGAKVEAVARGGADDPANKLTTENPERRHGK 437 GPVQDD TVIT+G++AGETVVIDGIDRLREGAKVEAVARGGADDPANKLTTENPERRHGK Sbjct: 327 GPVQDDLTVITDGVSAGETVVIDGIDRLREGAKVEAVARGGADDPANKLTTENPERRHGK 386 Query: 438 RGQGG------EAGQGGQGGQGNLSPEERQKRWAEINKRIDAGEFGEEIKKLPEDQRRQK 491 RGQG G GQG QG +SPEERQKRWAE+NKRIDAGEFGEEIKKLPEDQRRQK Sbjct: 387 RGQGNPGAQAGAGGDAGQGAQGGMSPEERQKRWAELNKRIDAGEFGEEIKKLPEDQRRQK 446 Query: 492 MMELRRQRE 500 MMELRRQRE Sbjct: 447 MMELRRQRE 455 >ref|YP_004751840.1| putative resistance transmembrane protein [Collimonas fungivorans Ter331] gb|AEK61017.1| putative resistance transmembrane protein [Collimonas fungivorans Ter331] Length = 488 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 269/425 (63%), Positives = 327/425 (76%), Gaps = 9/425 (2%) Query: 1 MTNTP-----NSKQPSPSNASSRGSILRRWWFWVLVAALAAGGGYKWWSKKKADQE---- 51 MT TP S Q P+ + R +R W+W+ + A Y W + + Sbjct: 1 MTTTPTPQIDQSSQSRPALPNQRQGGFQRGWWWLAAVVVLALAAYLIWGRSHQSGDAAGG 60 Query: 52 QMAAMGGPGGHFGPGGPGGRRPGAGAFAGPAMPVGVAVARVQNVDVFLNGLGAVTPTATA 111 Q AM G + G G G R GA A AG +PVGVAVA+ ++ ++L+GLG+VTP ATA Sbjct: 61 QPGAMPGQAANGGGKGGKGGRRGAFAGAGGPLPVGVAVAKTGDIRIYLSGLGSVTPEATA 120 Query: 112 TVRARVDGQLMKLHYKEGQVVKAGELLAEIDPRSLQAALTQAEGQLARDRALLASARLDL 171 TV++RV+GQLMKLH+KEGQVVKAG+LLAE+DPR Q A+TQAEGQL RD ALL +A++DL Sbjct: 121 TVKSRVNGQLMKLHFKEGQVVKAGDLLAELDPRPYQVAVTQAEGQLIRDTALLKAAQIDL 180 Query: 172 KRYQTLLSQDSIASQQVDTQAALVKQYEGTVKADEGSVASARLQLSFTRVTAPISGRLGL 231 +RY+TLL+QDSIASQQVDTQAALVKQYEGTV++D+G++ SARLQL+++RVTAPI GR+GL Sbjct: 181 QRYRTLLAQDSIASQQVDTQAALVKQYEGTVRSDQGALDSARLQLTYSRVTAPIGGRIGL 240 Query: 232 RQADVGNNVTTSDTNGLVIITQLQPITAIFSIPEDNIPKVLQQLQAGKKLPTDAWDRDQK 291 RQ D+GN V +SDTNG+ IITQLQPIT++FSIPEDNIP V++Q+QAGKKL TD WDRDQK Sbjct: 241 RQVDLGNIVQSSDTNGIAIITQLQPITSVFSIPEDNIPSVMKQIQAGKKLATDVWDRDQK 300 Query: 292 NKLASGMLLTIDNQVDATTGTVKLKAQFPNTDYALFPSQFVNIRLQLKTEEGAIVIPTAA 351 NKL SG LLTIDNQVD+TTGTVKLKA+FPN YALFPSQFVN+R+ L T A VIP AA Sbjct: 301 NKLDSGTLLTIDNQVDSTTGTVKLKAEFPNAGYALFPSQFVNVRMLLDTRRDATVIPNAA 360 Query: 352 IQRGSKGLFVYVVKEDNTVTVRPVKTGPVQDDQTVITEGIAAGETVVIDGIDRLREGAKV 411 IQRGS G FVYVVK D+TVT+R V GPV+ + T I +GIA GETVVIDGID+L+EGAKV Sbjct: 361 IQRGSSGNFVYVVKPDHTVTIRLVTAGPVEGESTAIDKGIAVGETVVIDGIDKLKEGAKV 420 Query: 412 EAVAR 416 E V R Sbjct: 421 EPVTR 425 >ref|ZP_07673605.1| multidrug RND efflux transporter, membrane fusion protein MdtA [Ralstonia sp. 5_7_47FAA] gb|EFP67984.1| multidrug RND efflux transporter, membrane fusion protein MdtA [Ralstonia sp. 5_7_47FAA] Length = 462 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 203/339 (59%), Positives = 267/339 (78%) Query: 76 GAFAGPAMPVGVAVARVQNVDVFLNGLGAVTPTATATVRARVDGQLMKLHYKEGQVVKAG 135 + A MPV V A +++V L+ LG VTP TV+ RVDGQL++L + EGQ VKAG Sbjct: 84 ASMANKPMPVMVGTAVKGDINVVLSALGNVTPVNNVTVKTRVDGQLVRLAFTEGQTVKAG 143 Query: 136 ELLAEIDPRSLQAALTQAEGQLARDRALLASARLDLKRYQTLLSQDSIASQQVDTQAALV 195 +LLAE+DPR+ QA L QAEGQLARD+ALL +A+LDL+RYQTLLSQDSI+ QQVDTQAALV Sbjct: 144 DLLAEVDPRTYQAQLAQAEGQLARDQALLQNAKLDLQRYQTLLSQDSISKQQVDTQAALV 203 Query: 196 KQYEGTVKADEGSVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDTNGLVIITQLQ 255 +QY+GTVK D+G+V +AR+QLS+TR+TAP+SGR+GLRQ D GN V SDTNG+V+ITQ+ Sbjct: 204 RQYDGTVKLDQGNVDNARVQLSYTRITAPVSGRVGLRQVDPGNIVHASDTNGIVVITQID 263 Query: 256 PITAIFSIPEDNIPKVLQQLQAGKKLPTDAWDRDQKNKLASGMLLTIDNQVDATTGTVKL 315 PIT I+SIPEDN+PKV+ +LQ+G KLP +AWDR Q +LA G+L+T+DN +D TTGTVKL Sbjct: 264 PITVIYSIPEDNLPKVMPRLQSGDKLPVEAWDRGQTTQLARGVLMTVDNTIDNTTGTVKL 323 Query: 316 KAQFPNTDYALFPSQFVNIRLQLKTEEGAIVIPTAAIQRGSKGLFVYVVKEDNTVTVRPV 375 +AQFPN + LFP+QFVN+R+++ T +++P AAIQRG++G FVYVV EDN V +R V Sbjct: 324 RAQFPNQNAMLFPNQFVNVRMRVDTLRDVVIVPGAAIQRGTQGTFVYVVGEDNKVALRLV 383 Query: 376 KTGPVQDDQTVITEGIAAGETVVIDGIDRLREGAKVEAV 414 K G + ++ + +G+ GE VVIDG D+LR+G+ VE + Sbjct: 384 KLGVTEGERVSVAQGLQPGERVVIDGADKLRDGSPVEVI 422 >ref|YP_001892710.1| efflux transporter, RND family, MFP subunit [Ralstonia pickettii 12J] ref|YP_002984211.1| RND family efflux transporter MFP subunit [Ralstonia pickettii 12D] gb|ACD29283.1| efflux transporter, RND family, MFP subunit [Ralstonia pickettii 12J] gb|ACS65539.1| efflux transporter, RND family, MFP subunit [Ralstonia pickettii 12D] Length = 462 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 221/411 (53%), Positives = 289/411 (70%), Gaps = 13/411 (3%) Query: 4 TPNSKQPSPSNASSRGSILRRWWFWVLVAALAAGGGYKWWSKKKADQEQMAAMGGPGGHF 63 TPN P+ G RRW WV++ L G Y + K D GG Sbjct: 25 TPNEVSPTLLPPPREGGKRRRWGIWVVITLLVLIG-YAVYHAKYRDAGGPGGRGG----- 78 Query: 64 GPGGPGGRRPGAGAFAGPAMPVGVAVARVQNVDVFLNGLGAVTPTATATVRARVDGQLMK 123 A AG MPV V A +++V L+ LG VTP TV+ RVDGQL++ Sbjct: 79 -------AGGRGAAMAGKPMPVMVGTAIKGDINVVLSALGNVTPVNNVTVKTRVDGQLVR 131 Query: 124 LHYKEGQVVKAGELLAEIDPRSLQAALTQAEGQLARDRALLASARLDLKRYQTLLSQDSI 183 L + EGQ VKAG+LLAE+DPR+ QA L QAEGQLARD+ALL +A+LDL+RYQTLLSQDSI Sbjct: 132 LAFTEGQTVKAGDLLAEVDPRTYQAQLAQAEGQLARDQALLHNAKLDLQRYQTLLSQDSI 191 Query: 184 ASQQVDTQAALVKQYEGTVKADEGSVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTS 243 + QQVDTQAALV+QY+GTVK D+G+V +AR+QLS+TR+TAP+SGR+GLRQ D GN V S Sbjct: 192 SKQQVDTQAALVRQYDGTVKLDQGNVDNARVQLSYTRITAPVSGRVGLRQVDPGNIVHAS 251 Query: 244 DTNGLVIITQLQPITAIFSIPEDNIPKVLQQLQAGKKLPTDAWDRDQKNKLASGMLLTID 303 DTNG+V+ITQ+ PIT I+SIPEDN+PKV+ +LQ+G KLP +AWDR Q +LA G+L+T+D Sbjct: 252 DTNGIVVITQIDPITVIYSIPEDNLPKVMPRLQSGDKLPVEAWDRGQTTQLARGVLMTVD 311 Query: 304 NQVDATTGTVKLKAQFPNTDYALFPSQFVNIRLQLKTEEGAIVIPTAAIQRGSKGLFVYV 363 N +D TTGTVKL+AQFPN + LFP+QFVN+R+++ T +++P AAIQRG++G FVYV Sbjct: 312 NTIDNTTGTVKLRAQFPNQNAMLFPNQFVNVRMRVDTLRDVVIVPGAAIQRGTQGTFVYV 371 Query: 364 VKEDNTVTVRPVKTGPVQDDQTVITEGIAAGETVVIDGIDRLREGAKVEAV 414 V ++N V +R VK G + D+ + +G+ GE VVIDG D+LR+G+ VE + Sbjct: 372 VGDNNKVALRLVKLGVTEGDRVSVAQGLQPGERVVIDGADKLRDGSPVEVI 422 >emb|CCA86796.1| multidrug efflux system, subunit A [Ralstonia syzygii R24] Length = 453 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 201/336 (59%), Positives = 258/336 (76%) Query: 79 AGPAMPVGVAVARVQNVDVFLNGLGAVTPTATATVRARVDGQLMKLHYKEGQVVKAGELL 138 +G MPV VA A +++V L LG VTP TV+ RVDGQL++L + EGQ VK G+LL Sbjct: 74 SGKPMPVMVATAAKGDINVVLTALGNVTPVNNVTVKTRVDGQLVRLAFTEGQTVKTGDLL 133 Query: 139 AEIDPRSLQAALTQAEGQLARDRALLASARLDLKRYQTLLSQDSIASQQVDTQAALVKQY 198 AEIDPR+ QA L QAEGQLARD ALL +ARLDL+RYQTL+ QDSIA QQVDTQA+LV+QY Sbjct: 134 AEIDPRAYQAQLAQAEGQLARDTALLQNARLDLQRYQTLMMQDSIAKQQVDTQASLVRQY 193 Query: 199 EGTVKADEGSVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDTNGLVIITQLQPIT 258 EGTVK D+G+ +AR+QLS+TR+TAP+SGR+GLRQ D GN V SDT G+V+ITQ+ PIT Sbjct: 194 EGTVKLDQGNADNARVQLSYTRITAPVSGRVGLRQVDPGNIVHASDTTGIVVITQIDPIT 253 Query: 259 AIFSIPEDNIPKVLQQLQAGKKLPTDAWDRDQKNKLASGMLLTIDNQVDATTGTVKLKAQ 318 I+++PED +PKV+ +LQAG KLP +AWDR Q N LA G L+T+DN +D TTGTVKL+AQ Sbjct: 254 VIYTLPEDTLPKVMPRLQAGDKLPVEAWDRGQTNLLAHGTLMTVDNTIDNTTGTVKLRAQ 313 Query: 319 FPNTDYALFPSQFVNIRLQLKTEEGAIVIPTAAIQRGSKGLFVYVVKEDNTVTVRPVKTG 378 FPN + ALFP+QFVN+R+++ T +++P AAIQRG++G F YVV D V +R VK G Sbjct: 314 FPNQNAALFPNQFVNVRMRVDTLHDQVILPGAAIQRGTQGTFAYVVGADGNVALRTVKLG 373 Query: 379 PVQDDQTVITEGIAAGETVVIDGIDRLREGAKVEAV 414 + D+ I +G+ GE VVIDG D+LR+G+ VE + Sbjct: 374 VTEGDRVSIAQGLNPGERVVIDGADKLRDGSPVEVI 409