BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2935.p         (182 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774942.1| hypothetical protein Hsero_1519 [Herbaspiril...   257   4e-67
ref|YP_003523113.1| hypothetical protein Slit_0485 [Sideroxydans...    89   3e-16
ref|YP_284605.1| hypothetical protein Daro_1386 [Dechloromonas a...    79   4e-13
emb|CBA30556.1| hypothetical protein Csp_C24140 [Curvibacter put...    74   8e-12
ref|YP_004152349.1| hypothetical protein Varpa_0015 [Variovorax ...    69   2e-10

>ref|YP_003774942.1| hypothetical protein Hsero_1519 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63034.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  257 bits (657), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 167/181 (92%), Positives = 172/181 (95%), Gaps = 3/181 (1%)

Query: 1   MLTMKNRILAGIAAVSISAVTLSAFAQMPPGGPDGPRGHAPSPEQIAKFEQMRAKHQAEL 60
           MLT+KNRIL+GIAAVSISAVTLSAFAQMPP    GP+GH PSPEQ+AKFEQMRAKHQAEL
Sbjct: 1   MLTIKNRILSGIAAVSISAVTLSAFAQMPP---GGPQGHPPSPEQVAKFEQMRAKHQAEL 57

Query: 61  HDKLKITASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTPERLDKQLDMMRKREAFA 120
           HDKLKITASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTPERLDKQLDMMRKREAFA
Sbjct: 58  HDKLKITASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTPERLDKQLDMMRKREAFA 117

Query: 121 EQRIAATKDFYATLSPEQQKIFDAEHAKMERHRWEKMEHMRHGDRKGPPRDGKPAPDAPP 180
           EQRIAATKDFYATLSP+QQKIFDAEHAKMERHRWEKMEHMR GDRKGPP DG PAP APP
Sbjct: 118 EQRIAATKDFYATLSPQQQKIFDAEHAKMERHRWEKMEHMRRGDRKGPPHDGNPAPVAPP 177

Query: 181 A 181
           A
Sbjct: 178 A 178


>ref|YP_003523113.1| hypothetical protein Slit_0485 [Sideroxydans lithotrophicus ES-1]
 gb|ADE10726.1| protein of unknown function DUF1520 [Sideroxydans lithotrophicus
           ES-1]
          Length = 154

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 10/150 (6%)

Query: 8   ILAGIAAVSISAVTLSAFAQMPPGGPDGP-RGHAPSPEQIAKFEQMRAKHQAELHDKLKI 66
           +LAG+A V++SA   SAFA+   GG D   R H        + EQ R +H  +LHDKLK+
Sbjct: 12  LLAGVAIVAMSA---SAFAR---GGEDCEYREHGRMGMNPERMEQYREQHLTKLHDKLKL 65

Query: 67  TASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTPERLDKQLDMMRKREAFAEQRIAA 126
           T  QE AWK +    +    D++ RP+ DE AKL+ P+RL+K L+ MR  EA     +AA
Sbjct: 66  TPQQETAWKKY--AAQQPVLDKSMRPDPDEMAKLNAPQRLEKGLERMRAMEARMSDHLAA 123

Query: 127 TKDFYATLSPEQQKIFDAEHAKMERHRWEK 156
            K+FYA L+PEQQK FD +  +    RWE+
Sbjct: 124 LKEFYAVLTPEQQKTFDDQMPRFGA-RWER 152


>ref|YP_284605.1| hypothetical protein Daro_1386 [Dechloromonas aromatica RCB]
 gb|AAZ46135.1| hypothetical protein Daro_1386 [Dechloromonas aromatica RCB]
          Length = 267

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 2/97 (2%)

Query: 51  QMRAKHQAELHDKLKITASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTPERLDKQL 110
           +M  +H  +LH+ LK+TA QE AWK  +D  +P    Q G    ++WAKL+ PER +K L
Sbjct: 149 KMMEQHHTQLHEALKLTAEQEPAWKKLMDSEQPRTAAQGG--PAEDWAKLNAPERAEKML 206

Query: 111 DMMRKREAFAEQRIAATKDFYATLSPEQQKIFDAEHA 147
           ++ + R+A     +AA K FYA L+PEQQKIF+  HA
Sbjct: 207 ELSKARQAQMTDHVAALKAFYAALTPEQQKIFEDFHA 243


>emb|CBA30556.1| hypothetical protein Csp_C24140 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 141

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/110 (49%), Positives = 65/110 (59%), Gaps = 4/110 (3%)

Query: 47  AKFEQMRAKHQAELHDKLKITASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTPERL 106
           AK E+M AK  AEL  KLKITA+QEA W  F +  KP         ++ E AKL TPERL
Sbjct: 24  AKMEEMHAKRSAELKAKLKITAAQEANWTAFSNSMKPPAPQTKPATDRAELAKLPTPERL 83

Query: 107 DK----QLDMMRKREAFAEQRIAATKDFYATLSPEQQKIFDAEHAKMERH 152
           DK    + + M  R A  EQR  A K FY TL+ EQ+K+FD E A M+ H
Sbjct: 84  DKIKALRTEHMAARTAQMEQRDQAVKTFYGTLTAEQKKVFDTEFANMKGH 133


>ref|YP_004152349.1| hypothetical protein Varpa_0015 [Variovorax paradoxus EPS]
 gb|ADU34238.1| hypothetical protein Varpa_0015 [Variovorax paradoxus EPS]
          Length = 192

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/128 (39%), Positives = 72/128 (56%), Gaps = 2/128 (1%)

Query: 44  EQIAKFEQMRAKHQAELHDKLKITASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTP 103
           +++ + ++ RAK  A L DKLK+TA+QE+AW  +    +P    +  R ++ E+AKL+TP
Sbjct: 62  QRMERMKEHRAKRLAALKDKLKLTAAQESAWTTYTTANQPPAGARPQRMDRAEFAKLTTP 121

Query: 104 ERLDKQLDMMRKREAFAEQRIAATKDFYATLSPEQQKIFDAE--HAKMERHRWEKMEHMR 161
           ERL++      +R A   +R  ATK FYA LS +Q+K FDAE  HA    HR        
Sbjct: 122 ERLERMQTRQAERSAMFAKRAEATKTFYAALSADQKKTFDAETVHAGGHGHRGHGGHRGH 181

Query: 162 HGDRKGPP 169
            G R   P
Sbjct: 182 DGQRDAAP 189