BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2934.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774941.1| two component transcription regulator protei... 437 e-121 ref|YP_004751842.1| two-component response regulator [Collimonas... 405 e-111 ref|ZP_08274600.1| Two-component response regulator [Oxalobacter... 363 9e-99 ref|YP_002354900.1| winged helix family two component transcript... 312 4e-83 ref|YP_934248.1| DNA-binding response regulator [Azoarcus sp. BH... 301 6e-80 >ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 242/248 (97%), Positives = 244/248 (98%) Query: 1 MRSMDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLT 60 MR MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLT Sbjct: 1 MRPMDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLT 60 Query: 61 LPGEDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS 120 LPGEDGLTLCRNLRA S+VPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS Sbjct: 61 LPGEDGLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS 120 Query: 121 VLRRTQALPPNMAQPDVATMRFAGWTLDLTARHLVNKDGVVVALSGAEFRLLKVFLDHPN 180 VLRRTQALPPNMAQPDVA MRFAGWTLDLTARHLVN+DGVVVALSGAEFRLLKVFLDHPN Sbjct: 121 VLRRTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPN 180 Query: 181 RVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 RVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT Sbjct: 181 RVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 Query: 241 AEGAGRSA 248 EGAGRSA Sbjct: 241 TEGAGRSA 248 >ref|YP_004751842.1| two-component response regulator [Collimonas fungivorans Ter331] gb|AEK61019.1| Two-component response regulator [Collimonas fungivorans Ter331] Length = 330 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 203/239 (84%), Positives = 221/239 (92%) Query: 4 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 63 M+T HILVVDDD +IRTLLAEYLD+NG RTL ATNG++MR++L E+RVDL+VLDLTLPG Sbjct: 91 METAAHILVVDDDHEIRTLLAEYLDANGFRTLMATNGNDMRKILSEARVDLVVLDLTLPG 150 Query: 64 EDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 123 EDGLTLCRNLRA SN+PVIMLTARGEPLDRILGLEMGADDYL+KPFEPRELFARIRSVLR Sbjct: 151 EDGLTLCRNLRADSNIPVIMLTARGEPLDRILGLEMGADDYLSKPFEPRELFARIRSVLR 210 Query: 124 RTQALPPNMAQPDVATMRFAGWTLDLTARHLVNKDGVVVALSGAEFRLLKVFLDHPNRVL 183 RTQALPPNMA P+ ++F WTLDL ARHLVN +G+VVALSGAE+R+LKVFLDHPNRVL Sbjct: 211 RTQALPPNMASPEAQQIQFGRWTLDLIARHLVNNEGLVVALSGAEYRILKVFLDHPNRVL 270 Query: 184 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTAE 242 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTP IIKTVRNEGYVLAT VT E Sbjct: 271 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPVIIKTVRNEGYVLATAVTVE 329 >ref|ZP_08274600.1| Two-component response regulator [Oxalobacteraceae bacterium IMCC9480] gb|EGF31933.1| Two-component response regulator [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 363 bits (933), Expect = 9e-99, Method: Composition-based stats. Identities = 196/239 (82%), Positives = 217/239 (90%) Query: 4 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 63 M+ T ILVVDDDRDIRTLLA+YLD NG RT TA+NG+EMR++L+ +R+DL+VLDLTLPG Sbjct: 1 MENPTQILVVDDDRDIRTLLADYLDGNGFRTFTASNGTEMRKMLDTARIDLVVLDLTLPG 60 Query: 64 EDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 123 EDGLTLCRNLRAQS++PVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR Sbjct: 61 EDGLTLCRNLRAQSSLPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 Query: 124 RTQALPPNMAQPDVATMRFAGWTLDLTARHLVNKDGVVVALSGAEFRLLKVFLDHPNRVL 183 RT ALPPNMA + +M F W LDL ARHLV +DG VVALSGAEFRLLKVFL+HPNRVL Sbjct: 121 RTNALPPNMALSEAHSMLFDTWRLDLMARHLVMEDGTVVALSGAEFRLLKVFLEHPNRVL 180 Query: 184 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTAE 242 NRDQLLELT+GR++DPFDRSVDIQISRLRQKLGDDARTP IIKTVRNEGYVL+ TV+ E Sbjct: 181 NRDQLLELTRGRDADPFDRSVDIQISRLRQKLGDDARTPRIIKTVRNEGYVLSATVSIE 239 >ref|YP_002354900.1| winged helix family two component transcriptional regulator [Thauera sp. MZ1T] gb|ACK54004.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 256 Score = 312 bits (799), Expect = 4e-83, Method: Composition-based stats. Identities = 170/248 (68%), Positives = 202/248 (81%), Gaps = 7/248 (2%) Query: 4 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 63 M+T+ HIL+VDDDRDIR LLA+YL+ GLR TA +G EM+ LE R+DLIVLDL +PG Sbjct: 1 MNTSDHILIVDDDRDIRQLLADYLEKQGLRCTTAADGREMKAALETHRIDLIVLDLMMPG 60 Query: 64 EDGLTLCRNLRA----QSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIR 119 EDGLTLCRNLRA +N P++MLTARGE +DRI+GLEMGADDYLAKPF PRELFARIR Sbjct: 61 EDGLTLCRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIR 120 Query: 120 SVLRRTQALPPNM-AQP--DVATMRFAGWTLDLTARHLVNKDGVVVALSGAEFRLLKVFL 176 +VLRRT+ALPPN+ A P + +RFA W LD RHLV+ +G VVALSGAE+R+L VFL Sbjct: 121 AVLRRTRALPPNLDAAPPANARLLRFAHWRLDTINRHLVDAEGTVVALSGAEYRMLAVFL 180 Query: 177 DHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLA 236 HP +VL+RDQL+ELTQGRE+D FDRS+D+ +SRLRQ+LGD+AR P IIKTVRNEGYVLA Sbjct: 181 SHPQKVLSRDQLMELTQGREADVFDRSIDLLVSRLRQRLGDNAREPAIIKTVRNEGYVLA 240 Query: 237 TTVTAEGA 244 V AE A Sbjct: 241 AEVVAETA 248 >ref|YP_934248.1| DNA-binding response regulator [Azoarcus sp. BH72] emb|CAL95361.1| probable DNA-binding response regulator [Azoarcus sp. BH72] Length = 252 Score = 301 bits (771), Expect = 6e-80, Method: Composition-based stats. Identities = 160/239 (66%), Positives = 191/239 (79%), Gaps = 6/239 (2%) Query: 9 HILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGLT 68 HIL+VDDDRDIR+LLA+YL+ GLR TA +G EM+ LE RVDLIVLDL LPGEDGLT Sbjct: 7 HILIVDDDRDIRSLLADYLEKQGLRCTTAADGREMKAALERHRVDLIVLDLMLPGEDGLT 66 Query: 69 LCRNLRA---QSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRT 125 LCRNLRA +N P++MLTARGE +DRI+GLEMGADDYL KPF PREL+AR+R++LRR Sbjct: 67 LCRNLRAGGSHANTPILMLTARGEDMDRIIGLEMGADDYLPKPFVPRELYARVRAILRRA 126 Query: 126 QALPPNM---AQPDVATMRFAGWTLDLTARHLVNKDGVVVALSGAEFRLLKVFLDHPNRV 182 +ALPPN+ Q +RFA W LD RHL++ G VV LSGAE+R+L VFL HP RV Sbjct: 127 RALPPNLDTQPQAQARELRFAQWRLDTVNRHLIDAQGTVVPLSGAEYRMLGVFLAHPQRV 186 Query: 183 LNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTA 241 L+RDQL+ELTQGRE+D FDRS+D+ +SRLRQ+LGD+AR P IIKTVRNEGYVL+ V A Sbjct: 187 LSRDQLMELTQGREADVFDRSIDLMVSRLRQRLGDNAREPAIIKTVRNEGYVLSAEVVA 245