BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2933.p (460 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774940.1| two component sensor histidine kinase [Herba... 833 0.0 ref|YP_004751843.1| periplasmic sensor signal transduction histi... 483 e-134 ref|ZP_08274599.1| Signal transduction histidine kinase [Oxaloba... 480 e-133 ref|ZP_05135727.1| periplasmic sensor signal transduction histid... 294 2e-77 ref|YP_001971380.1| putative two-component system, sensor histid... 292 1e-76 >ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63032.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 465 Score = 833 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 443/465 (95%), Positives = 449/465 (96%), Gaps = 5/465 (1%) Query: 1 MKNFIGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDD 60 MKNF+GSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVD+ Sbjct: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 Query: 61 IPPAQRPIVLQAATNFGFEARMVEDMNDAIGPNAS----TSPLIEMLQARLGEDRKIAVQ 116 IPPAQRPIVLQAA+NFGFEARMVEDMNDAIGP+AS TSPL EMLQARLGEDRKIAVQ Sbjct: 61 IPPAQRPIVLQAASNFGFEARMVEDMNDAIGPDASPSPSTSPLTEMLQARLGEDRKIAVQ 120 Query: 117 RESECPPLRADDGRGPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRGR-GPGGPAGLF 175 RESECPPLR DD R PRRDTCRVIYISLHDQALMRLRLHQPGEPPALR R GPGGPA LF Sbjct: 121 RESECPPLRTDDARAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLF 180 Query: 176 GLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLPEAGPTEIRQAAHA 235 GLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPL E GPTEIRQAAHA Sbjct: 181 GLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHA 240 Query: 236 FNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVTDAPLQQKLIDDLGVMHGMV 295 FNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKV+D LQQKLIDDLGVMHGMV Sbjct: 241 FNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMV 300 Query: 296 REGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVLAQPGALRRCL 355 REGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFV+AQPGALRRCL Sbjct: 301 REGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCL 360 Query: 356 TNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTG 415 TNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTG Sbjct: 361 TNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTG 420 Query: 416 GTGLGLTIALNIAENHHGQLRLRNLAEGGLEVLLELPPMTPTKNR 460 GTGLGLTIALNIAENHHGQLRLRNLAEGGLEVLLELPPMTP KNR Sbjct: 421 GTGLGLTIALNIAENHHGQLRLRNLAEGGLEVLLELPPMTPAKNR 465 >ref|YP_004751843.1| periplasmic sensor signal transduction histidine kinase [Collimonas fungivorans Ter331] gb|AEK61020.1| periplasmic sensor signal transduction histidine kinase [Collimonas fungivorans Ter331] Length = 455 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 265/454 (58%), Positives = 325/454 (71%), Gaps = 5/454 (1%) Query: 1 MKNFIGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDD 60 ++NF GS+ NR+F +LL GI+VA T+WLA NERR ++ +A+RVEQIV ++D+ Sbjct: 4 VRNFFGSVANRVFLILLTGILVAAATTSWLAENERRKAFKDFYEFRIAERVEQIVFSLDN 63 Query: 61 IPPAQRPIVLQAATNFGFEARMVEDMNDAIGPNASTSPLIEMLQARLGEDRKIAVQRESE 120 + P R +VLQ + NFG EA MV+D +A+ N S L +L+ RLG+DR I V ++S+ Sbjct: 64 VGPDMRSVVLQTSENFGLEASMVKDTENAVDDNPS---LTLLLKKRLGDDRSILVDKQSD 120 Query: 121 CPPLRADDGRGPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRGRGPGGPAGLFGLQYI 180 C + R + C+V+Y+SL D L++L+L P A P G + Y Sbjct: 121 CKLHTRRNFDFRRPEECQVVYVSLKDGTLLKLKLRMTRGPGAPPPARPPGMP--YTSPYF 178 Query: 181 LLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLPEAGPTEIRQAAHAFNAMQ 240 LFL+LI LA+ VA+M RPI+ LA AA LG DID PL E GPTE+RQAA AFNAMQ Sbjct: 179 ALFLLLIGGLAYFVAKMTARPIKHLAVAAGELGRDIDRPPLDETGPTEVRQAATAFNAMQ 238 Query: 241 ARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVTDAPLQQKLIDDLGVMHGMVREGLD 300 ARI+RQIQHRTHMLAAITHDLQTPLTR+RLRLEKV +A L++KL++DL VM MVREGLD Sbjct: 239 ARIKRQIQHRTHMLAAITHDLQTPLTRLRLRLEKVGEADLRRKLLEDLAVMQSMVREGLD 298 Query: 301 LARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVLAQPGALRRCLTNLID 360 LARSMDS+E +Q LDIDSLLDSVCADA DA QDV L+G TRA ++AQP LRRCLTNL+D Sbjct: 299 LARSMDSAEAMQKLDIDSLLDSVCADAVDARQDVTLEGRTRASIMAQPNTLRRCLTNLVD 358 Query: 361 NACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTGLG 420 NA KYG+ AR+ +A E I IRIRD G GIP LE VF+PF+RLE SRSRDTGGTGLG Sbjct: 359 NATKYGRYARLLVAREGSDIVIRIRDGGTGIPAELLETVFDPFFRLETSRSRDTGGTGLG 418 Query: 421 LTIALNIAENHHGQLRLRNLAEGGLEVLLELPPM 454 LTIA NIAENH L+LRN EGGLE L LP + Sbjct: 419 LTIARNIAENHRATLQLRNHPEGGLEATLRLPAL 452 >ref|ZP_08274599.1| Signal transduction histidine kinase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31932.1| Signal transduction histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 457 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 273/462 (59%), Positives = 331/462 (71%), Gaps = 9/462 (1%) Query: 1 MKNFIGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDD 60 MKNF+GSI NR+F +LL GI+VA T LA ER + ++R H A+RV Q+V A+D Sbjct: 1 MKNFLGSIANRVFVILLAGILVATGVTAMLAEREREGAMNQMRLNHSAERVVQLVVALDQ 60 Query: 61 IPPAQRPIVLQAATNFGFEARMVEDMNDAIGPNASTSPLIEMLQARLGEDRKIAVQRESE 120 P RP++LQ ATNFG A M +D+ +A+G S L+++L++RLG R+I +++++ Sbjct: 61 AAPEVRPVILQTATNFGVAASMADDL-EALG--GSDGALVDLLKSRLGLHRQIVLKQQTG 117 Query: 121 CPPLRADDGRGPRRDT--CRVIYISLHDQALMRLRLHQPGEPPALRGRGPGGPAGLFGLQ 178 C P A R R + C+ + + L D L+R++L P G G P Sbjct: 118 CQPRLARLPRFERANPGDCQSVLVGLSDGQLLRVQL----RPGGSTGGGKDKPPLGLPSA 173 Query: 179 YILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLPEAGPTEIRQAAHAFNA 238 Y+ LFL LI +LAWLVARM RPIRQLA+AA LGSD+D APLPE GPTEIRQAA AFNA Sbjct: 174 YLALFLTLIGLLAWLVARMTARPIRQLAEAAGALGSDLDRAPLPETGPTEIRQAASAFNA 233 Query: 239 MQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVTDAPLQQKLIDDLGVMHGMVREG 298 MQARIRRQ+QHRTHMLAAITHDLQTPLTR+RLRLEKV D L+ KLIDDLGVM MVREG Sbjct: 234 MQARIRRQVQHRTHMLAAITHDLQTPLTRLRLRLEKVGDDELRTKLIDDLGVMQSMVREG 293 Query: 299 LDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVLAQPGALRRCLTNL 358 L+LARSMDS E +Q LD+DSL+DSVCADA DAGQDV L G + V+AQP ALRRCLTNL Sbjct: 294 LELARSMDSQEPLQRLDLDSLIDSVCADATDAGQDVELLGPSGVRVMAQPNALRRCLTNL 353 Query: 359 IDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTG 418 +DNA KYG+ ARVS+ EQ+++ IRIRD GPG+P +LEAVF+PF+RLE SRSRDTGGTG Sbjct: 354 LDNAIKYGRLARVSVVREQERVVIRIRDAGPGLPPDQLEAVFDPFFRLETSRSRDTGGTG 413 Query: 419 LGLTIALNIAENHHGQLRLRNLAEGGLEVLLELPPMTPTKNR 460 LGLTIA NI E H G L L N A GGLE L LP T +R Sbjct: 414 LGLTIARNIIEAHGGTLVLANPAGGGLEATLALPVRQATASR 455 >ref|ZP_05135727.1| periplasmic sensor signal transduction histidine kinase [Stenotrophomonas sp. SKA14] gb|EED39788.1| periplasmic sensor signal transduction histidine kinase [Stenotrophomonas sp. SKA14] Length = 469 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 186/467 (39%), Positives = 272/467 (58%), Gaps = 28/467 (5%) Query: 1 MKNFIGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDD 60 +++F+ S+ R+F +LL G+ VA LA ++R+ +ADR++ V +D Sbjct: 4 LRHFLSSMVGRLFVILLLGMSVAAIGATMLATSKRQQEFERQNLNRIADRLQGYVNLLDG 63 Query: 61 IP-----------PAQRPIVLQAATNFGFEARMVEDMNDAIGPNASTSPLIEMLQARLG- 108 P P+ R ++ A A M E ++D GP + ++ + Sbjct: 64 NPELRERLLEVGGPSVRALLPGARLGRADTALM-EVLDDRPGPVSRAHVHFTSFRSCIPK 122 Query: 109 -EDRKIAVQRESECPPLRADDGRGPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRGRG 167 +D P D P + CR + ++L+D L++L L P Sbjct: 123 LQDLLPPPPPGHRKHPRERDPAFIPPK--CRAVDVTLNDGTLLKLALDSPAV-------- 172 Query: 168 PGGPAGLFGLQ--YILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLPEAG 225 G+ + ++ L ++ IA+LA++VARMA+ P+++LA AA LG D+ PLP G Sbjct: 173 --AHNGILAVDPWFLTLLVLAIAVLAYIVARMASAPLQELAAAAEDLGDDLQRDPLPLRG 230 Query: 226 PTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVTDAPLQQKLI 285 P E+++AA AFNAMQ R++R + RT MLAAITHDLQTPLTR+RLRLE VTD L+++LI Sbjct: 231 PREVQRAAEAFNAMQHRLQRHLAERTQMLAAITHDLQTPLTRLRLRLENVTDEVLRERLI 290 Query: 286 DDLGVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVL 345 DL M +VREGL+LARS +S+E+ ALD+DSLL+S+ DAA+ G DV +G T A ++ Sbjct: 291 GDLAAMQALVREGLELARSAESAEQRAALDLDSLLESIVEDAAEGGADVVFEGGTGAVLM 350 Query: 346 AQPGALRRCLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYR 405 +P A+ R +NL+DNA Y + RV + I + + D GPG+ E +LEAVF+PF R Sbjct: 351 LRPLAMHRLFSNLVDNAVMYAQRVRVRVERSGGAITVMVADDGPGLAEDQLEAVFDPFVR 410 Query: 406 LEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLAEGGLEVLLELP 452 +E SRSR+TGG GLGLTIA +AE +L LRN AEGGLE +++ P Sbjct: 411 VETSRSRETGGAGLGLTIARALAEKDGARLWLRNRAEGGLEAVVQWP 457 >ref|YP_001971380.1| putative two-component system, sensor histidine kinase transcriptional regulator [Stenotrophomonas maltophilia K279a] emb|CAQ45075.1| putative two-component system, sensor histidine kinase transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 469 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 179/464 (38%), Positives = 269/464 (57%), Gaps = 22/464 (4%) Query: 1 MKNFIGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDD 60 +++F+ S+ R+F +LL G+ VA LA ++R+ +ADR++ V +D Sbjct: 4 LRHFLSSMVGRLFVILLLGMSVAAIGATMLATSKRQQEFERQNLNRIADRLQGYVNLLDG 63 Query: 61 IPPAQRPIV---------LQAATNFG-FEARMVEDMNDAIGPNASTSPLIEMLQARLGED 110 P + ++ LQ G + ++E ++D GP + ++ + + Sbjct: 64 NPELRERLLEIGGPSVRALQPGARLGRADTALMEVLDDRPGPVSRAHVHFTSFRSCIPKL 123 Query: 111 RKIAVQRESECPPLRADDGRGPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRGRGPGG 170 + + + CR + ++L+D L++L L P Sbjct: 124 QDLLPPPPPGHRRHPRERDPAFIPPKCRAVDVTLNDGTLLKLALDSPAV----------A 173 Query: 171 PAGLFGLQ--YILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLPEAGPTE 228 G+ + ++ L ++ IA+LA++VARMA+ P+++LA AA LG D+ PLP GP E Sbjct: 174 HNGILAVDPWFLTLLVLAIAVLAYIVARMASAPLQELAAAAEDLGDDLQRDPLPLRGPRE 233 Query: 229 IRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVTDAPLQQKLIDDL 288 +++AA AFNAMQ R++R + RT MLAAITHDLQTPLTR+RLRLE V+D L+++LI DL Sbjct: 234 VQRAAEAFNAMQHRLQRHLAERTQMLAAITHDLQTPLTRLRLRLENVSDEVLRERLIGDL 293 Query: 289 GVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVLAQP 348 M +VREGL+LARS +S+E+ ALD+DSLL+S+ DAA+ G DV +G T A ++ +P Sbjct: 294 AAMQALVREGLELARSAESAEQRAALDLDSLLESIVEDAAEGGADVVFEGGTGAVLMLRP 353 Query: 349 GALRRCLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEA 408 A+ R +NL+DNA Y RV + I + D GPG+ E +LEAVF+PF R+E Sbjct: 354 LAMHRLFSNLVDNAVMYAHRVRVRVERSGGTITAMVSDDGPGLAEDQLEAVFDPFVRVET 413 Query: 409 SRSRDTGGTGLGLTIALNIAENHHGQLRLRNLAEGGLEVLLELP 452 SRSR+TGG GLGLTIA +AE +L LRN AEGGLE +++ P Sbjct: 414 SRSRETGGAGLGLTIARALAEKDGARLWLRNRAEGGLEAVVQWP 457