BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2931.p (169 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774938.1| hypothetical protein Hsero_1515 [Herbaspiril... 147 7e-34 ref|YP_004751845.1| hypothetical protein CFU_1190 [Collimonas fu... 89 2e-16 ref|YP_004215643.1| hypothetical protein Rahaq_4941 [Rahnella sp... 81 7e-14 ref|YP_001795895.1| hypothetical protein RALTA_A0507 [Cupriavidu... 80 7e-14 ref|YP_004197473.1| hypothetical protein GM18_0716 [Geobacter sp... 78 4e-13 >ref|YP_003774938.1| hypothetical protein Hsero_1515 [Herbaspirillum seropedicae SmR1] gb|ADJ63030.1| hypothetical protein Hsero_1515 [Herbaspirillum seropedicae SmR1] Length = 187 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 134/138 (97%), Positives = 136/138 (98%) Query: 1 MLALGGCVSVPTGPSVMAMPGKDKTYEQFRADQQQCQQYAQDAIGGQAAQTQNNAANSAA 60 M+ALGGCVSVPTGPSVMAMPGK K+YEQFRADQQQCQQYAQDAIGGQAAQTQNNAANSAA Sbjct: 17 MVALGGCVSVPTGPSVMAMPGKGKSYEQFRADQQQCQQYAQDAIGGQAAQTQNNAANSAA 76 Query: 61 VGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMTYTQ 120 VGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGS AGSNAAAGGNYSMQQRYDMTYTQ Sbjct: 77 VGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSTAGSNAAAGGNYSMQQRYDMTYTQ 136 Query: 121 CMYSKGNQVQQPVQTTTV 138 CMYSKGNQVQQPVQTTTV Sbjct: 137 CMYSKGNQVQQPVQTTTV 154 >ref|YP_004751845.1| hypothetical protein CFU_1190 [Collimonas fungivorans Ter331] gb|AEK61022.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 187 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 90/167 (53%), Positives = 111/167 (66%), Gaps = 6/167 (3%) Query: 4 LGGCVSVPTGPSVMAMPGKDKTYEQFRADQQQCQQYAQDAIGGQAAQTQ-NNAANSAAVG 62 L GCV+ P+GP+VMA+PG K+YEQFR D+ CQ+ AQ+ IG A Q +NA +AA G Sbjct: 18 LTGCVTAPSGPNVMALPGSGKSYEQFRNDEAVCQRAAQERIGPYAPQAAADNAVGTAAAG 77 Query: 63 TAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMTYTQCM 122 T +GA AGALIGAA+G AGAGAAIG G GLL GS+ ++AA +Y MQ+ Y+ YTQCM Sbjct: 78 TVIGAAAGALIGAATGRAGAGAAIGGGVGLLAGSSVAGDSAARSSYGMQREYNNVYTQCM 137 Query: 123 YSKGNQVQQPVQTTTVYTYRPRYYAPP---PPPGYYGPPPVYYGPPP 166 Y+KGNQV PV + R +Y P PP YY P YGPPP Sbjct: 138 YAKGNQV--PVAGGYANSRRQQYAPAPQYSTPPDYYPPQRGNYGPPP 182 >ref|YP_004215643.1| hypothetical protein Rahaq_4941 [Rahnella sp. Y9602] gb|ADW76516.1| hypothetical protein Rahaq_4941 [Rahnella sp. Y9602] Length = 179 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 84/163 (51%), Positives = 106/163 (65%), Gaps = 2/163 (1%) Query: 3 ALGGCVSVPTGPSVMAMPGKDKTYEQFRADQQQCQQYAQDAIGGQAAQTQNNAANSAAVG 62 AL GCVS PT P VM +PG K Y+QFR D+ C+ A +++ G A NNA N+AA G Sbjct: 15 ALSGCVSPPTRPDVMVLPGTGKDYQQFRMDEMACRNDAYNSVNGGAQTANNNAVNTAAAG 74 Query: 63 TAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMTYTQCM 122 T VGA AGAL+GAAS AGAGA +GAG GLL+GSA GSN A + ++Q +YD YTQCM Sbjct: 75 TVVGAAAGALLGAASHQAGAGALVGAGSGLLIGSAMGSNGAGASSGNLQDQYDTVYTQCM 134 Query: 123 YSKGNQVQQPVQTTTVYTYRPRYYAPPPPPGYYGPPPVYYGPP 165 Y+KGN+V PV + Y+ +P+ + PP Y PP PP Sbjct: 135 YAKGNKV--PVDASYGYSAQPQAQSEVPPDYYPAPPGNNDVPP 175 >ref|YP_001795895.1| hypothetical protein RALTA_A0507 [Cupriavidus taiwanensis LMG 19424] emb|CAP63175.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 315 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 67/137 (48%), Positives = 87/137 (63%), Gaps = 3/137 (2%) Query: 2 LALGGCVSVPTGPSVMAMPGKDKTYEQFRADQQQCQQYAQDAIGGQAAQTQNNAANSAAV 61 LALG C +P+GPSVMA+PG K +EQFRAD C+Q+A +GG ++ AAN+AAV Sbjct: 158 LALGACAVLPSGPSVMALPGTGKNFEQFRADDYNCRQFALGRVGGVSSAQ---AANNAAV 214 Query: 62 GTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMTYTQC 121 G+AV A A+ N G+GAA+GAG GLL G+A G+ A Y QQ+YD Y QC Sbjct: 215 GSAVVGTALGAAAGAAFNGGSGAAVGAGVGLLTGAAVGAGNAQYAGYGTQQQYDAAYVQC 274 Query: 122 MYSKGNQVQQPVQTTTV 138 MY+ GN+V P + V Sbjct: 275 MYASGNRVPVPGRVAAV 291 >ref|YP_004197473.1| hypothetical protein GM18_0716 [Geobacter sp. M18] gb|ADW12197.1| hypothetical protein GM18_0716 [Geobacter sp. M18] Length = 175 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 88/163 (53%), Positives = 107/163 (65%), Gaps = 5/163 (3%) Query: 1 MLALGGCVSVPTGPSVMAMPGKDKTYEQFRADQQQCQQYAQDAIGGQAAQTQN-NAANSA 59 +L L GC ++PTGPSV +P K++EQF A+ C++YA+ +G +T N N A A Sbjct: 14 LLVLSGCATMPTGPSVRVLPTPGKSFEQFVAEDSLCRRYAEQQLGMSPQETVNQNTATGA 73 Query: 60 AVGTAVGAVAGALIGAASGNAGAGAAIGAGGGLLVGSAAGSNAAAGGNYSMQQRYDMTYT 119 VGTA+GA GA +GAASGNAGAGAAIG G GLL G+A+GS A Y Q+RYD TY Sbjct: 74 VVGTAIGAGVGAALGAASGNAGAGAAIGGGTGLLFGAASGSEAGRVYGYEAQRRYDNTYV 133 Query: 120 QCMYSKGNQVQQPVQTTTVYTYRPRYYAPPPPPGYYGPPPVYY 162 QCMY+KGNQ + TT R R YAPPPPPG Y PP YY Sbjct: 134 QCMYAKGNQ----IPGTTRKARRARPYAPPPPPGMYSVPPDYY 172