BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2928.p (462 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774936.1| fumarate hydratase [Herbaspirillum seropedic... 858 0.0 ref|YP_004751830.1| fumarate hydratase class II [Collimonas fung... 729 0.0 ref|YP_001100773.1| fumarate hydratase [Herminiimonas arsenicoxy... 676 0.0 ref|YP_001354303.1| fumarate hydratase [Janthinobacterium sp. Ma... 674 0.0 gb|EGP45545.1| fumarate hydratase [Achromobacter xylosoxidans AX... 673 0.0 >ref|YP_003774936.1| fumarate hydratase [Herbaspirillum seropedicae SmR1] gb|ADJ63028.1| fumarate hydratase class II (fumarase) protein [Herbaspirillum seropedicae SmR1] Length = 462 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 446/462 (96%), Positives = 458/462 (99%) Query: 1 MNHRMERDTFGLIEVPADRLWGAQTERSLHHFHISTERMPAELIVALAAVKRACAAVNRD 60 MNHRMERDTFGLIEVPADRLWGAQTERSLHHFHISTERMPAELIVALAAVKRACA+VNRD Sbjct: 1 MNHRMERDTFGLIEVPADRLWGAQTERSLHHFHISTERMPAELIVALAAVKRACASVNRD 60 Query: 61 LGKLDGKKADAIIAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV 120 LGKLDGKKA+AIIAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV Sbjct: 61 LGKLDGKKAEAIIAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV 120 Query: 121 RGEDRLIHPNDDVNRSQSSNDIFPTAMHVAACMAVATHLIPSLHTLRATLADKSAQFADI 180 RGEDRLIHPNDDVNR QSSNDIFPTAMHVAACMAVATHLIP+LHTLR TLA+KS+QFADI Sbjct: 121 RGEDRLIHPNDDVNRGQSSNDIFPTAMHVAACMAVATHLIPALHTLRGTLAEKSSQFADI 180 Query: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLDHAESAIIATLNAISELAAGGTAVGTGLNAHPE 240 VKIGRTHLQDATPLTLGQEFSGYVAQL+HAESA+I TLNAISELAAGGTAVGTGLNAHPE Sbjct: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLEHAESAVIGTLNAISELAAGGTAVGTGLNAHPE 240 Query: 241 FGERVAAELAKYFGFPFKTAPNKFAALAGHDALVAAHGGLKTLAAAMMKIANDVRWLASG 300 FGERVAAELAK+FGFPFKTAPNKFAALAGHDALVA+HGGLKTLAAA+MKIANDVRWLASG Sbjct: 241 FGERVAAELAKFFGFPFKTAPNKFAALAGHDALVASHGGLKTLAAALMKIANDVRWLASG 300 Query: 301 PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF 360 PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF Sbjct: 301 PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF 360 Query: 361 KPVIIHNFLQSVRLLGDGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA 420 KP+IIHNFLQSVRLL DGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA Sbjct: 361 KPLIIHNFLQSVRLLADGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA 420 Query: 421 AKIAKQAHHDGTTLKQAALALGYVTEEQFAEWIKPEQMTRPG 462 AKIAKQAHHDGTTLKQAAL+LGYVTEEQFAEWIKPEQMTRPG Sbjct: 421 AKIAKQAHHDGTTLKQAALSLGYVTEEQFAEWIKPEQMTRPG 462 >ref|YP_004751830.1| fumarate hydratase class II [Collimonas fungivorans Ter331] gb|AEK61007.1| Fumarate hydratase class II [Collimonas fungivorans Ter331] Length = 463 Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 371/458 (81%), Positives = 408/458 (89%) Query: 4 RMERDTFGLIEVPADRLWGAQTERSLHHFHISTERMPAELIVALAAVKRACAAVNRDLGK 63 R+ERDTFG IEVP +RLWGAQT+RSLHHFHIS+ERMP ELIVALA VK+ACA VN+DLGK Sbjct: 5 RIERDTFGKIEVPDERLWGAQTQRSLHHFHISSERMPPELIVALATVKQACAQVNQDLGK 64 Query: 64 LDGKKADAIIAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGVRGE 123 L +A+AII AA EVIAG+HP EFPLSVWQTGSGTQSNMNMNEVLANRASE+LGGVRGE Sbjct: 65 LPKTQAEAIIQAAQEVIAGQHPDEFPLSVWQTGSGTQSNMNMNEVLANRASEILGGVRGE 124 Query: 124 DRLIHPNDDVNRSQSSNDIFPTAMHVAACMAVATHLIPSLHTLRATLADKSAQFADIVKI 183 RL+HPND VN+SQSSNDIFPTAMHVAA +AVA+ L+P+L LRATL K+ F DIVKI Sbjct: 125 SRLVHPNDAVNQSQSSNDIFPTAMHVAAAIAVASKLLPALRKLRATLHKKATDFDDIVKI 184 Query: 184 GRTHLQDATPLTLGQEFSGYVAQLDHAESAIIATLNAISELAAGGTAVGTGLNAHPEFGE 243 GRTHLQDATPLTLGQEFSGYVAQLD+AE I A L + +LAAGGTAVGTGLNA +FGE Sbjct: 185 GRTHLQDATPLTLGQEFSGYVAQLDYAEKIIKAALEPLCDLAAGGTAVGTGLNAPKDFGE 244 Query: 244 RVAAELAKYFGFPFKTAPNKFAALAGHDALVAAHGGLKTLAAAMMKIANDVRWLASGPRS 303 RVAA+LAK PF+TA NKFAALA HDALVAAHG LKTLAAA+MKIANDVRWLASGPRS Sbjct: 245 RVAAQLAKTENLPFRTADNKFAALAAHDALVAAHGALKTLAAALMKIANDVRWLASGPRS 304 Query: 304 GLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVFKPV 363 GLGEI+IPENEPGSSIMPGKVNPTQCEA+TMLC QVFGNDVA+N GGASGNFELNVFKP+ Sbjct: 305 GLGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVFGNDVAINFGGASGNFELNVFKPL 364 Query: 364 IIHNFLQSVRLLGDGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKAAKI 423 I HNFLQSVRLL DGMASFEEHCA GI AN RI ELME+SLMLVTALAPHIGYD+AA+I Sbjct: 365 IAHNFLQSVRLLADGMASFEEHCADGIAANRDRIAELMERSLMLVTALAPHIGYDRAAQI 424 Query: 424 AKQAHHDGTTLKQAALALGYVTEEQFAEWIKPEQMTRP 461 AK AHHDG+TLKQAALALGYVTE++FAEW++P +MT P Sbjct: 425 AKHAHHDGSTLKQAALALGYVTEQEFAEWVQPAKMTYP 462 >ref|YP_001100773.1| fumarate hydratase [Herminiimonas arsenicoxydans] gb|AAV68354.1| putative furamase [Herminiimonas arsenicoxydans] emb|CAL62652.1| Fumarate hydratase class II (fumarase C) [Herminiimonas arsenicoxydans] Length = 462 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 348/461 (75%), Positives = 392/461 (85%) Query: 1 MNHRMERDTFGLIEVPADRLWGAQTERSLHHFHISTERMPAELIVALAAVKRACAAVNRD 60 M R+ERDTFG I V +RLWGAQT+RSL HF ISTERMP ELIVALA VKRA A N Sbjct: 1 MKTRIERDTFGPIAVNDERLWGAQTQRSLEHFKISTERMPQELIVALAEVKRAAALANLG 60 Query: 61 LGKLDGKKADAIIAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV 120 LGKLD KKADAI++AA+EVIAG+HP EFPL++WQTGSGTQ+NMNMNEVLANRASELLGG Sbjct: 61 LGKLDRKKADAIVSAAEEVIAGQHPHEFPLALWQTGSGTQTNMNMNEVLANRASELLGGE 120 Query: 121 RGEDRLIHPNDDVNRSQSSNDIFPTAMHVAACMAVATHLIPSLHTLRATLADKSAQFADI 180 RGE RL+HPNDDVN QSSNDIFPTAM+VAA +++ L+P++H LR TL K+ +FADI Sbjct: 121 RGEQRLVHPNDDVNLGQSSNDIFPTAMYVAASVSITQKLLPAIHALRVTLQRKAEEFADI 180 Query: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLDHAESAIIATLNAISELAAGGTAVGTGLNAHPE 240 VKIGRTHLQDATPLTLGQEFSGYVAQL HAE I+ L + ELA GGTAVGTGLN HPE Sbjct: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLHHAELGIVVLLPPLHELAVGGTAVGTGLNTHPE 240 Query: 241 FGERVAAELAKYFGFPFKTAPNKFAALAGHDALVAAHGGLKTLAAAMMKIANDVRWLASG 300 FG RVAAEL + G FK+A NKFAALA HDALV+ HGGLKTLAA+MMKIANDVRWLASG Sbjct: 241 FGTRVAAELTQRSGVHFKSAANKFAALAAHDALVSVHGGLKTLAASMMKIANDVRWLASG 300 Query: 301 PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF 360 PRSGLGE++IPENEPGSSIMPGKVNPTQ EA+TMLC QVFGNDVALN GGASGNFELNVF Sbjct: 301 PRSGLGELSIPENEPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVALNFGGASGNFELNVF 360 Query: 361 KPVIIHNFLQSVRLLGDGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA 420 KP++ HNFLQSVRLL DG+ F+EHCA+GI AN RI +LM +SLMLVTAL PHIGYDKA Sbjct: 361 KPLMAHNFLQSVRLLSDGIHGFDEHCAQGIAANRERIADLMARSLMLVTALTPHIGYDKA 420 Query: 421 AKIAKQAHHDGTTLKQAALALGYVTEEQFAEWIKPEQMTRP 461 A+IAKQAHHDGTTLK+ ALALG+V+ E+F W++P+ M P Sbjct: 421 AQIAKQAHHDGTTLKETALALGFVSSEEFDRWVQPQDMLHP 461 >ref|YP_001354303.1| fumarate hydratase [Janthinobacterium sp. Marseille] gb|ABR89091.1| fumarate hydratase, class II [Janthinobacterium sp. Marseille] Length = 462 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 351/462 (75%), Positives = 389/462 (84%) Query: 1 MNHRMERDTFGLIEVPADRLWGAQTERSLHHFHISTERMPAELIVALAAVKRACAAVNRD 60 M R+ERDTFG IEV + RLWGAQT+RSL HF ISTE+MP ELI+ALA VKRA A VN D Sbjct: 1 MTTRIERDTFGPIEVDSQRLWGAQTQRSLEHFKISTEKMPQELIIALAEVKRAAAIVNLD 60 Query: 61 LGKLDGKKADAIIAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV 120 LGKL KA AI AA+EVI G+HPLEFPL+VWQTGSGTQSNMNMNEVLANRASELLGG Sbjct: 61 LGKLAKDKAQAIAQAAEEVIDGRHPLEFPLAVWQTGSGTQSNMNMNEVLANRASELLGGE 120 Query: 121 RGEDRLIHPNDDVNRSQSSNDIFPTAMHVAACMAVATHLIPSLHTLRATLADKSAQFADI 180 RGE RL+HPNDDVN QSSNDIFPTAM+VAA +AV+ L+P+ L+ATL K+ +FADI Sbjct: 121 RGEKRLVHPNDDVNLGQSSNDIFPTAMYVAASVAVSKTLLPAATALQATLNGKAEEFADI 180 Query: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLDHAESAIIATLNAISELAAGGTAVGTGLNAHPE 240 VKIGRTHLQDATPLTLGQEFSGYVAQL + +AI A L + +LA GGTAVGTGLN HPE Sbjct: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLAQSTAAIHALLPPLQDLAVGGTAVGTGLNTHPE 240 Query: 241 FGERVAAELAKYFGFPFKTAPNKFAALAGHDALVAAHGGLKTLAAAMMKIANDVRWLASG 300 FG RVAAEL + G FK+A NKFAALA HDA+V+ HGGLKTLAA+MMKIANDVRWLASG Sbjct: 241 FGVRVAAELTQRTGVTFKSADNKFAALAAHDAMVSVHGGLKTLAASMMKIANDVRWLASG 300 Query: 301 PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF 360 PRSGLGEI+IPENEPGSSIMPGKVNPTQ EA+TMLC QVFGNDVALN GGASGNFELNVF Sbjct: 301 PRSGLGEISIPENEPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVALNFGGASGNFELNVF 360 Query: 361 KPVIIHNFLQSVRLLGDGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA 420 KP++ HNFLQSVRLL DG+ SF+EHCA GI AN RI +LME+SLMLVTALAPHIGYDKA Sbjct: 361 KPLLAHNFLQSVRLLADGIHSFDEHCAHGIVANRDRIADLMERSLMLVTALAPHIGYDKA 420 Query: 421 AKIAKQAHHDGTTLKQAALALGYVTEEQFAEWIKPEQMTRPG 462 AKIAKQAH G LK+ ALALGYVT E+F W+KP+ M PG Sbjct: 421 AKIAKQAHQQGANLKETALALGYVTSEEFDLWVKPQDMIHPG 462 >gb|EGP45545.1| fumarate hydratase [Achromobacter xylosoxidans AXX-A] Length = 463 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 347/462 (75%), Positives = 390/462 (84%) Query: 1 MNHRMERDTFGLIEVPADRLWGAQTERSLHHFHISTERMPAELIVALAAVKRACAAVNRD 60 M R+E+DTFG IEVP D LWGAQT+RSLH F ISTE+MP L++A+A +KRA A VN D Sbjct: 1 MKTRIEKDTFGPIEVPEDHLWGAQTQRSLHFFAISTEKMPEPLVIAMARLKRAAAKVNAD 60 Query: 61 LGKLDGKKADAIIAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV 120 LG+LD K AD II AADEVIAGK P EFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV Sbjct: 61 LGELDPKIADGIIRAADEVIAGKWPNEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV 120 Query: 121 RGEDRLIHPNDDVNRSQSSNDIFPTAMHVAACMAVATHLIPSLHTLRATLADKSAQFADI 180 RGE+R +HPND VNR QSSND FPTAMHVAA + V HL+P L TLRAT A KSA+F DI Sbjct: 121 RGEERKVHPNDHVNRGQSSNDTFPTAMHVAAAVQVEHHLLPVLKTLRATFAAKSAEFYDI 180 Query: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLDHAESAIIATLNAISELAAGGTAVGTGLNAHPE 240 VKIGRTHLQDATPLTLGQE SGYVAQLD AE I ATL + +LA GGTAVGTGLNAHP+ Sbjct: 181 VKIGRTHLQDATPLTLGQELSGYVAQLDLAEQQIRATLPGLHQLAIGGTAVGTGLNAHPQ 240 Query: 241 FGERVAAELAKYFGFPFKTAPNKFAALAGHDALVAAHGGLKTLAAAMMKIANDVRWLASG 300 F +V+AELA F +APNKF ALA H+AL+ AHG LK+LAA +MKIANDVRWL+SG Sbjct: 241 FSAKVSAELAHATETAFVSAPNKFQALASHEALLFAHGALKSLAAGLMKIANDVRWLSSG 300 Query: 301 PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF 360 PRSGLGEI+IPENEPGSSIMPGKVNPTQCEA+TML AQV GNDVA+NIGGASGNFELNV+ Sbjct: 301 PRSGLGEISIPENEPGSSIMPGKVNPTQCEAITMLAAQVMGNDVAINIGGASGNFELNVY 360 Query: 361 KPVIIHNFLQSVRLLGDGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA 420 KP++IHNFLQSVRLL DGMASF++HCA GIE N RI EL+++SLMLVTAL PHIGYDKA Sbjct: 361 KPLVIHNFLQSVRLLTDGMASFDQHCAAGIEPNRERIAELVDRSLMLVTALNPHIGYDKA 420 Query: 421 AKIAKQAHHDGTTLKQAALALGYVTEEQFAEWIKPEQMTRPG 462 A+IAK+AH +G +LK++ALALGYVTE QFAEW+ P MT G Sbjct: 421 AQIAKKAHKEGLSLKESALALGYVTEAQFAEWVVPGSMTNAG 462