BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2926.p (162 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774934.1| cobalamin biosynthesis transmembrane protein... 277 4e-73 ref|YP_004751827.1| adenosylcobinamide-phosphate synthase [Colli... 217 5e-55 ref|ZP_08273048.1| putative cobalamin biosynthesis protein [Oxal... 211 3e-53 ref|YP_001098954.1| CobD/CbiB family protein [Herminiimonas arse... 198 3e-49 ref|YP_001352286.1| CobD/CbiB family protein [Janthinobacterium ... 195 2e-48 >ref|YP_003774934.1| cobalamin biosynthesis transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63026.1| cobalamin biosynthesis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 277 bits (708), Expect = 4e-73, Method: Composition-based stats. Identities = 160/162 (98%), Positives = 162/162 (100%) Query: 1 MPVGPALAVMYRVAEYLSRAWNEPDHMKYEAFGRFAAQAFYWIDWIPARLTAAAFAVVGN 60 MPVGPALAVMYRVAEYLSRAWNEPDHMK+EAFGRFAAQAFYWIDWIPARLTAAAFAVVGN Sbjct: 158 MPVGPALAVMYRVAEYLSRAWNEPDHMKFEAFGRFAAQAFYWIDWIPARLTAAAFAVVGN 217 Query: 61 FEDAIYAWRNFASRWDDEAAGIILAAGGGAMGVRFGTEKEAAAGIILPADAATVDSMPEE 120 FEDAIYAWRNFASRWDDE+AGIILAAGGGAMGVRFGTEKEAAAGIILPADAATVDSMPEE Sbjct: 218 FEDAIYAWRNFASRWDDESAGIILAAGGGAMGVRFGTEKEAAAGIILPADAATVDSMPEE 277 Query: 121 TDGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG 162 TDGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG Sbjct: 278 TDGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG 319 >ref|YP_004751827.1| adenosylcobinamide-phosphate synthase [Collimonas fungivorans Ter331] gb|AEK61004.1| Adenosylcobinamide-phosphate synthase [Collimonas fungivorans Ter331] Length = 318 Score = 217 bits (552), Expect = 5e-55, Method: Composition-based stats. Identities = 125/162 (77%), Positives = 137/162 (84%), Gaps = 1/162 (0%) Query: 1 MPVGPALAVMYRVAEYLSRAWNEPDHMKYEAFGRFAAQAFYWIDWIPARLTAAAFAVVGN 60 MPVGPA AVMYR+AEYL+R WNEPDHM+ EAFGRFAAQAFYWIDWIPAR+TAAAFAVVGN Sbjct: 158 MPVGPACAVMYRIAEYLARGWNEPDHMRNEAFGRFAAQAFYWIDWIPARMTAAAFAVVGN 217 Query: 61 FEDAIYAWRNFASRWDDEAAGIILAAGGGAMGVRFGTEKEAAAGIILPADAATVDSMPEE 120 FEDAIYAWRNFA RW +E GIIL+ GGGAMGV GT E A ILPADA+T+DS E Sbjct: 218 FEDAIYAWRNFADRWKNETDGIILSTGGGAMGVLLGTPLETAIA-ILPADASTIDSTAME 276 Query: 121 TDGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG 162 ++ PGD P+PR LQSTVGLVWRALLLWMFLLLLLS A+W G Sbjct: 277 SESPPGDVPTPRALQSTVGLVWRALLLWMFLLLLLSAAIWFG 318 >ref|ZP_08273048.1| putative cobalamin biosynthesis protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33495.1| putative cobalamin biosynthesis protein [Oxalobacteraceae bacterium IMCC9480] Length = 318 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 122/162 (75%), Positives = 137/162 (84%), Gaps = 1/162 (0%) Query: 1 MPVGPALAVMYRVAEYLSRAWNEPDHMKYEAFGRFAAQAFYWIDWIPARLTAAAFAVVGN 60 MPVGPA AVMYRVAEYL+RAWNEP+HMK EAFG FAA+AFYWIDWIPARLTA AFA+VGN Sbjct: 158 MPVGPACAVMYRVAEYLARAWNEPEHMKNEAFGVFAARAFYWIDWIPARLTAIAFAIVGN 217 Query: 61 FEDAIYAWRNFASRWDDEAAGIILAAGGGAMGVRFGTEKEAAAGIILPADAATVDSMPEE 120 FEDAIYAWRNFASRW DEA GIILAAG GA+G+R GT + AA ++P D T+D+ E Sbjct: 218 FEDAIYAWRNFASRWQDEAVGIILAAGSGALGIRLGTPLQGAAN-VMPVDPTTLDTTELE 276 Query: 121 TDGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG 162 +D PG+ P+ R LQSTVGLVWRALLLWM LLLLLSVAVW+G Sbjct: 277 SDAAPGEEPTARALQSTVGLVWRALLLWMLLLLLLSVAVWLG 318 >ref|YP_001098954.1| CobD/CbiB family protein [Herminiimonas arsenicoxydans] emb|CAL60827.1| putative cobalamin biosynthesis protein CobD-like [Herminiimonas arsenicoxydans] Length = 318 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 117/161 (72%), Positives = 130/161 (80%), Gaps = 1/161 (0%) Query: 2 PVGPALAVMYRVAEYLSRAWNEPDHMKYEAFGRFAAQAFYWIDWIPARLTAAAFAVVGNF 61 P+GP A+MYRVAEYL+RAWNEP + E FGRFAAQAFYWIDWIP RLTAAAFAVVGNF Sbjct: 159 PLGPVGAIMYRVAEYLARAWNEPKAAEREEFGRFAAQAFYWIDWIPVRLTAAAFAVVGNF 218 Query: 62 EDAIYAWRNFASRWDDEAAGIILAAGGGAMGVRFGTEKEAAAGIILPADAATVDSMPEET 121 EDAIYAWRNFA RW DEA GIIL+AGGGAMG+R G E AA +I P DA TVDS+ ET Sbjct: 219 EDAIYAWRNFAGRWQDEAVGIILSAGGGAMGIRLGASVENAADVI-PVDAGTVDSITLET 277 Query: 122 DGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG 162 + G+ S R LQSTVGLVWRALLLWM L+LLLS+A W+G Sbjct: 278 EAPVGEEASVRALQSTVGLVWRALLLWMLLVLLLSIAKWLG 318 >ref|YP_001352286.1| CobD/CbiB family protein [Janthinobacterium sp. Marseille] gb|ABR88708.1| cobalamin biosynthesis protein CobD [Janthinobacterium sp. Marseille] Length = 318 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 117/161 (72%), Positives = 130/161 (80%), Gaps = 1/161 (0%) Query: 2 PVGPALAVMYRVAEYLSRAWNEPDHMKYEAFGRFAAQAFYWIDWIPARLTAAAFAVVGNF 61 P+GP AVMYRVAEYL+R WNEP + E FGRFA+QAFYWIDWIPARLTAAAFAVVGNF Sbjct: 159 PLGPVGAVMYRVAEYLARVWNEPKMAEREEFGRFASQAFYWIDWIPARLTAAAFAVVGNF 218 Query: 62 EDAIYAWRNFASRWDDEAAGIILAAGGGAMGVRFGTEKEAAAGIILPADAATVDSMPEET 121 EDAIYAWRNFA RW DEA GIIL+AGGGAMG+R G E A +I PADAA VDS+ ET Sbjct: 219 EDAIYAWRNFAGRWQDEAIGIILSAGGGAMGIRLGAPVETVAEVI-PADAAMVDSINIET 277 Query: 122 DGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG 162 + G+ S R LQSTVGLVWRALLLWM L+LLLS+A W+G Sbjct: 278 EAPLGEEASSRALQSTVGLVWRALLLWMLLVLLLSIAKWLG 318