BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2925.p         (156 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774934.1| cobalamin biosynthesis transmembrane protein...   206   1e-51
ref|ZP_08273048.1| putative cobalamin biosynthesis protein [Oxal...   167   5e-40
ref|YP_004751827.1| adenosylcobinamide-phosphate synthase [Colli...   166   1e-39
ref|YP_001352286.1| CobD/CbiB family protein [Janthinobacterium ...   155   3e-36
ref|YP_001098954.1| CobD/CbiB family protein [Herminiimonas arse...   134   5e-30

>ref|YP_003774934.1| cobalamin biosynthesis transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63026.1| cobalamin biosynthesis transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 105/113 (92%), Positives = 109/113 (96%)

Query: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGHAHHGRLGWVVMVGALTV 60
           MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAG  HHGRLGWV MVGALTV
Sbjct: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGQVHHGRLGWVAMVGALTV 60

Query: 61  PVALVYWLLLHVSLVAAFAWNVLVVYMTLGFRHYSHYFTSIQLALNTGDDVAA 113
           PVALVYWLLLHVSLVAAFAWNVLVVY+TLGFRHYSHYFTSIQLALN+GD++ A
Sbjct: 61  PVALVYWLLLHVSLVAAFAWNVLVVYLTLGFRHYSHYFTSIQLALNSGDEMTA 113


>ref|ZP_08273048.1| putative cobalamin biosynthesis protein [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33495.1| putative cobalamin biosynthesis protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 318

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/135 (64%), Positives = 102/135 (75%), Gaps = 3/135 (2%)

Query: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGHAHHGRLGWVVMVGALTV 60
           MTFLSIL ALLIEQLKPLRADNP+Y  IK  AA +E WFNAGHAHHG+LGW +++ AL V
Sbjct: 1   MTFLSILCALLIEQLKPLRADNPIYGGIKLLAARMELWFNAGHAHHGKLGWFLVMAALMV 60

Query: 61  PVALVYWLLLHVSLVAAFAWNVLVVYMTLGFRHYSHYFTSIQLALNTGDDVAAPPC---W 117
           P AL+YWL   VS  AA AWN+L+VY+TLGFRHYSHY++SIQLALN+GDD AA      W
Sbjct: 61  PTALIYWLASRVSPFAALAWNILIVYLTLGFRHYSHYYSSIQLALNSGDDAAARILLAEW 120

Query: 118 PNRPRKTRRTSTSAR 132
             +   T  +S  AR
Sbjct: 121 TKQDTSTMESSEIAR 135


>ref|YP_004751827.1| adenosylcobinamide-phosphate synthase [Collimonas fungivorans
           Ter331]
 gb|AEK61004.1| Adenosylcobinamide-phosphate synthase [Collimonas fungivorans
           Ter331]
          Length = 318

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/113 (74%), Positives = 92/113 (81%)

Query: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGHAHHGRLGWVVMVGALTV 60
           MTFLSILFALLIEQLKPLRADNPVYA +K FA  IE  FNAG A  GRLGW  ++ ALTV
Sbjct: 1   MTFLSILFALLIEQLKPLRADNPVYAWVKQFAGKIEASFNAGQARQGRLGWFCVILALTV 60

Query: 61  PVALVYWLLLHVSLVAAFAWNVLVVYMTLGFRHYSHYFTSIQLALNTGDDVAA 113
           P ALVYWL +H+   AA  WNVL+VY+TLGFRHYSHYF+SIQLALNTGDD  A
Sbjct: 61  PTALVYWLCVHIGAWAALLWNVLIVYLTLGFRHYSHYFSSIQLALNTGDDATA 113


>ref|YP_001352286.1| CobD/CbiB family protein [Janthinobacterium sp. Marseille]
 gb|ABR88708.1| cobalamin biosynthesis protein CobD [Janthinobacterium sp.
           Marseille]
          Length = 318

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/113 (67%), Positives = 89/113 (78%)

Query: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGHAHHGRLGWVVMVGALTV 60
           MTF SI FALLIEQLKPLRADNPVYA  ++ AA +EG FNAG AHHGRL W +M+ A  +
Sbjct: 1   MTFFSIFFALLIEQLKPLRADNPVYAGARALAAKLEGSFNAGQAHHGRLAWALMIAAFCI 60

Query: 61  PVALVYWLLLHVSLVAAFAWNVLVVYMTLGFRHYSHYFTSIQLALNTGDDVAA 113
           PVAL+YW+ + +  +AA   NV VVY+TLGFRHYSHYFTSIQLALN GD+  A
Sbjct: 61  PVALLYWISVKLGPLAALIVNVGVVYLTLGFRHYSHYFTSIQLALNNGDEATA 113


>ref|YP_001098954.1| CobD/CbiB family protein [Herminiimonas arsenicoxydans]
 emb|CAL60827.1| putative cobalamin biosynthesis protein CobD-like [Herminiimonas
           arsenicoxydans]
          Length = 318

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/113 (64%), Positives = 86/113 (76%)

Query: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGHAHHGRLGWVVMVGALTV 60
           MTF SILFALLIEQLKPLRADNPVYA  ++ A  +E  FNAG   HGR+ W +M+ A  V
Sbjct: 1   MTFFSILFALLIEQLKPLRADNPVYAGARALAEKLEKSFNAGQVQHGRIAWFLMIAAFIV 60

Query: 61  PVALVYWLLLHVSLVAAFAWNVLVVYMTLGFRHYSHYFTSIQLALNTGDDVAA 113
           PVAL+YW+ L +  +AA   NV VVY+TLGFRHYSH+FTSIQLALN GD+  A
Sbjct: 61  PVALLYWISLKIGPLAALVVNVAVVYVTLGFRHYSHFFTSIQLALNNGDEATA 113