BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2922.p         (138 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774932.1| 50S ribosomal protein L19 [Herbaspirillum se...   201   4e-50
ref|YP_001098952.1| 50S ribosomal protein L19 [Herminiimonas ars...   195   2e-48
ref|ZP_08273046.1| LSU ribosomal protein L19p [Oxalobacteraceae ...   193   9e-48
ref|ZP_04579470.1| large subunit ribosomal protein L19 [Oxalobac...   189   8e-47
ref|YP_004235742.1| 50S ribosomal protein L19 [Acidovorax avenae...   187   4e-46

>ref|YP_003774932.1| 50S ribosomal protein L19 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63024.1| 50S ribosomal subunit protein L19 [Herbaspirillum seropedicae SmR1]
          Length = 127

 Score =  201 bits (510), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 12  MDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNSN 71
           MDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNSN
Sbjct: 1   MDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNSN 60

Query: 72  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPSRA 131
           FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPSRA
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPSRA 120

Query: 132 AKAAAAE 138
           AKAAAAE
Sbjct: 121 AKAAAAE 127


>ref|YP_001098952.1| 50S ribosomal protein L19 [Herminiimonas arsenicoxydans]
 sp|A4G2T8|RL19_HERAR RecName: Full=50S ribosomal protein L19
 emb|CAL60825.1| 50S ribosomal subunit protein L19 [Herminiimonas arsenicoxydans]
          Length = 128

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 118/126 (93%), Positives = 120/126 (95%)

Query: 12  MDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNSN 71
           MDLIQ LEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVI+RRNRGLNSN
Sbjct: 1   MDLIQTLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 72  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPSRA 131
           FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLP R 
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPQRR 120

Query: 132 AKAAAA 137
             + AA
Sbjct: 121 VVSKAA 126


>ref|ZP_08273046.1| LSU ribosomal protein L19p [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33493.1| LSU ribosomal protein L19p [Oxalobacteraceae bacterium IMCC9480]
          Length = 128

 Score =  193 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 119/128 (92%), Positives = 123/128 (96%), Gaps = 2/128 (1%)

Query: 12  MDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNSN 71
           MDLIQQLEQEEIARL K+IPDFAPGDTVIV+VNVVEGTRKRAQAYEGVVI+RRNRGLNSN
Sbjct: 1   MDLIQQLEQEEIARLGKSIPDFAPGDTVIVSVNVVEGTRKRAQAYEGVVISRRNRGLNSN 60

Query: 72  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPSR- 130
           FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLP+R 
Sbjct: 61  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPNRR 120

Query: 131 -AAKAAAA 137
             AK AAA
Sbjct: 121 VVAKKAAA 128


>ref|ZP_04579470.1| large subunit ribosomal protein L19 [Oxalobacter formigenes OXCC13]
 gb|EEO30443.1| large subunit ribosomal protein L19 [Oxalobacter formigenes OXCC13]
          Length = 131

 Score =  189 bits (481), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 112/125 (89%), Positives = 121/125 (96%)

Query: 11  KMDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNS 70
           +M+LIQQLE+EEI RL K+IPDFAPGDTVIV+V VVEG RKRAQAYEGVVI+RRNRGLNS
Sbjct: 6   EMNLIQQLEKEEIERLGKSIPDFAPGDTVIVSVMVVEGNRKRAQAYEGVVISRRNRGLNS 65

Query: 71  NFIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPSR 130
           NFIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKL+YLRERSGKSARIKEKLPSR
Sbjct: 66  NFIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLFYLRERSGKSARIKEKLPSR 125

Query: 131 AAKAA 135
           +AK+A
Sbjct: 126 SAKSA 130


>ref|YP_004235742.1| 50S ribosomal protein L19 [Acidovorax avenae subsp. avenae ATCC
           19860]
 gb|ADX47175.1| ribosomal protein L19 [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 128

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 111/125 (88%), Positives = 116/125 (92%)

Query: 12  MDLIQQLEQEEIARLAKNIPDFAPGDTVIVNVNVVEGTRKRAQAYEGVVIARRNRGLNSN 71
           M+LIQ LEQEEIARL K IP+FAPGDTVIV+VNVVEGTRKR QAYEGVVIA+RNRGLNS 
Sbjct: 1   MNLIQTLEQEEIARLNKTIPEFAPGDTVIVSVNVVEGTRKRVQAYEGVVIAKRNRGLNSG 60

Query: 72  FIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRERSGKSARIKEKLPSRA 131
           F VRKISSGEGVERTFQ YSPLIASIEVKRRGDVRRAKLYYLR+RSGKSARIKEKLPSR 
Sbjct: 61  FTVRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYLRDRSGKSARIKEKLPSRV 120

Query: 132 AKAAA 136
            KAAA
Sbjct: 121 NKAAA 125