BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2920.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774930.1| 16s rRNA processing protein [Herbaspirillum ... 355 2e-96 ref|YP_004751823.1| 16S rRNA processing protein [Collimonas fung... 239 3e-61 ref|YP_001352282.1| 16S rRNA processing protein RimM [Janthinoba... 223 1e-56 ref|YP_001098950.1| 16S rRNA-processing protein RimM [Herminiimo... 222 3e-56 ref|ZP_08273044.1| 16S rRNA processing protein RimM [Oxalobacter... 216 2e-54 >ref|YP_003774930.1| 16s rRNA processing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63022.1| 16s rRNA processing protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 193/206 (93%), Positives = 195/206 (94%), Gaps = 2/206 (0%) Query: 9 MTDQAQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQD 68 MT AQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQD Sbjct: 1 MTHPAQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQD 60 Query: 69 VDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVE 128 VDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVE Sbjct: 61 VDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVE 120 Query: 129 NLQGEALGVVSDMMDNGAHPILVVKAPAQETAPEPQPQPAADAKPKKGAKEKSAAAPELL 188 NLQGE LGVVSDMMDNGAHPIL V AP Q+TAPE PAADAKPKKGAKEKSAAA E+L Sbjct: 121 NLQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPE--LDPAADAKPKKGAKEKSAAASEML 178 Query: 189 IPFVDQFVKTVQQSEKKIIVDWDKDY 214 IPFVDQFVKTVQQSEKKIIVDWDKDY Sbjct: 179 IPFVDQFVKTVQQSEKKIIVDWDKDY 204 >ref|YP_004751823.1| 16S rRNA processing protein [Collimonas fungivorans Ter331] gb|AEK61000.1| 16S rRNA processing protein [Collimonas fungivorans Ter331] Length = 193 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 125/211 (59%), Positives = 154/211 (72%), Gaps = 21/211 (9%) Query: 5 SGVLMTDQAQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQ 64 + V ++ A AG + P DLV VG++TGAYGI GW+R++PYS++ADALL+AKTWWL + Sbjct: 3 ASVNLSATAPAGTAIPSDLVVVGYITGAYGINGWVRIKPYSADADALLHAKTWWLNRQNA 62 Query: 65 PK-QDVDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLI 123 P+ DV++MQ+K HSGD+VARL GVA R+AAEAMKG+VV I R HFPAL D+EFYWVDLI Sbjct: 63 PELHDVEMMQAKNHSGDIVARLMGVAGRDAAEAMKGSVVHIPRSHFPALADDEFYWVDLI 122 Query: 124 GSAVENLQGEALGVVSDMMDNGAHPILVVKAPAQETAPEPQPQPAADAKPKKGAKEKSAA 183 G VENLQGE LGVV+D+MDNGAHPIL + PA A ++ A Sbjct: 123 GMMVENLQGEQLGVVADLMDNGAHPILRITVPA--------------------AADQDKA 162 Query: 184 APELLIPFVDQFVKTVQQSEKKIIVDWDKDY 214 APELL+PFV+QFVKTV Q+ KKI VDW DY Sbjct: 163 APELLVPFVEQFVKTVDQAAKKITVDWGLDY 193 >ref|YP_001352282.1| 16S rRNA processing protein RimM [Janthinobacterium sp. Marseille] sp|A6SVI5|RIMM_JANMA RecName: Full=Ribosome maturation factor rimM gb|ABR89143.1| 16S rRNA processing protein RimM [Janthinobacterium sp. Marseille] Length = 179 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 123/196 (62%), Positives = 142/196 (72%), Gaps = 21/196 (10%) Query: 20 PDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPK-QDVDVMQSKGHS 78 P+DLV VG+++GAYG+ GW+RVRPYS++ADALL AKTWWL+K P+ DV++MQSK H+ Sbjct: 4 PEDLVLVGYISGAYGLNGWVRVRPYSADADALLTAKTWWLDK---PEFHDVEMMQSKIHT 60 Query: 79 GDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVENLQGEALGVV 138 GDVVA+L GVA R+AAEA+KG V I R HFPAL DNEFYWVDLIG VENLQGE LG V Sbjct: 61 GDVVAKLMGVAGRDAAEALKGATVQIPRSHFPALSDNEFYWVDLIGLEVENLQGEHLGQV 120 Query: 139 SDMMDNGAHPILVVKAPAQETAPEPQPQPAADAKPKKGAKEKSAAAPELLIPFVDQFVKT 198 SDMMDNGAHPIL V PQ A PK AA ELLIPFV+QFV T Sbjct: 121 SDMMDNGAHPILRVAV----------PQAAETTDPK-------AAPQELLIPFVEQFVIT 163 Query: 199 VQQSEKKIIVDWDKDY 214 V ++ KKI VDW DY Sbjct: 164 VDRTAKKITVDWGLDY 179 >ref|YP_001098950.1| 16S rRNA-processing protein RimM [Herminiimonas arsenicoxydans] sp|A4G2T6|RIMM_HERAR RecName: Full=Ribosome maturation factor rimM emb|CAL60823.1| 16S rRNA processing protein [Herminiimonas arsenicoxydans] Length = 177 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 123/196 (62%), Positives = 143/196 (72%), Gaps = 23/196 (11%) Query: 20 PDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPK-QDVDVMQSKGHS 78 P+DLV VG+++GAYG+ GW+RVRPYS++ADALLNAKTWWL+K P+ +DV +MQSK HS Sbjct: 4 PEDLVLVGYISGAYGLNGWVRVRPYSADADALLNAKTWWLDK---PEFRDVAMMQSKIHS 60 Query: 79 GDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVENLQGEALGVV 138 GDVVA+L GVA R+AAEA+KG V I R HFPAL DNEFYWVDLIG VENLQG LG V Sbjct: 61 GDVVAQLMGVAGRDAAEALKGATVQIPRSHFPALSDNEFYWVDLIGLEVENLQGVRLGQV 120 Query: 139 SDMMDNGAHPILVVKAPAQETAPEPQPQPAADAKPKKGAKEKSAAAPELLIPFVDQFVKT 198 SDMMDNGAHPIL V P ++A PK AA ELLIPFV+QFV T Sbjct: 121 SDMMDNGAHPILRVAVPQ-----------TSEADPK--------AAQELLIPFVEQFVIT 161 Query: 199 VQQSEKKIIVDWDKDY 214 + Q+ KKI VDW DY Sbjct: 162 IDQTAKKITVDWGLDY 177 >ref|ZP_08273044.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium IMCC9480] gb|EGF33491.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium IMCC9480] Length = 187 Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 120/202 (59%), Positives = 139/202 (68%), Gaps = 23/202 (11%) Query: 13 AQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQDVDVM 72 A +G P DLV VG+V+GAYG+ GW+R++P+SS DALLNA+TWWL+K DVDVM Sbjct: 9 AGSGVIVPADLVQVGYVSGAYGLNGWVRIKPFSSTGDALLNARTWWLDKPAL--HDVDVM 66 Query: 73 QSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVENLQG 132 Q+K HSGDVV +L GVA R+AAEA+KGT V I R FPAL D EFYWVDLIG AVENLQG Sbjct: 67 QAKMHSGDVVVQLAGVAGRDAAEALKGTSVQIPRSRFPALPDGEFYWVDLIGLAVENLQG 126 Query: 133 EALGVVSDMMDNGAHPILVVKAPAQETAPEPQPQPAADAKPKKGAKEKSAAAPELLIPFV 192 E++GVV DMMDNGAHPIL V+A P AD A E+LIPFV Sbjct: 127 ESIGVVHDMMDNGAHPILRVEAAI---------IPGAD------------KADEILIPFV 165 Query: 193 DQFVKTVQQSEKKIIVDWDKDY 214 QFV+TV Q KKI VDW DY Sbjct: 166 GQFVRTVDQQAKKITVDWGLDY 187