BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2919.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774928.1| transmembrane protein [Herbaspirillum serope... 217 7e-55 ref|ZP_08273042.1| putative transmembrane protein [Oxalobacterac... 145 2e-33 ref|YP_004751821.1| hypothetical protein CFU_1166 [Collimonas fu... 144 9e-33 ref|YP_001098948.1| hypothetical protein HEAR0622 [Herminiimonas... 120 1e-25 ref|YP_001352280.1| hypothetical protein mma_0590 [Janthinobacte... 119 3e-25 >ref|YP_003774928.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63020.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 217 bits (553), Expect = 7e-55, Method: Composition-based stats. Identities = 120/140 (85%), Positives = 129/140 (92%) Query: 61 LPSAPRHKNKTLTTFLATAFGSIGLHRFYLHGGRDRFGWLHILAIPLSLALMAAQPDAPK 120 +P + RHKNKTLTTFLAT GSIGLHRFYL+G RDRFGWLHILAIPLSL LMAAQP AP+ Sbjct: 1 MPPSSRHKNKTLTTFLATTLGSIGLHRFYLYGARDRFGWLHILAIPLSLGLMAAQPQAPR 60 Query: 121 LFTGLPFVLSALIACLEALALGLTPDDKWDARYNTGSGKNSESHWILALILVLTVGLGAM 180 LFT LPFVLS LIACLEAL +GLTPDDKWD+R+N GSGK+SESHWILA+ILVLTVGLGAM Sbjct: 61 LFTALPFVLSMLIACLEALVIGLTPDDKWDSRHNAGSGKSSESHWILAVILVLTVGLGAM 120 Query: 181 GVIALLARSFDLLFTGGAFG 200 GVIALLARSFDLLFTGGAFG Sbjct: 121 GVIALLARSFDLLFTGGAFG 140 >ref|ZP_08273042.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33489.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 138 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 76/135 (56%), Positives = 96/135 (71%) Query: 66 RHKNKTLTTFLATAFGSIGLHRFYLHGGRDRFGWLHILAIPLSLALMAAQPDAPKLFTGL 125 RHKNKT T LAT G IGLHRFYLHG D++GWLH+ ++P++L ++ LF Sbjct: 4 RHKNKTFATLLATVTGGIGLHRFYLHGAADKWGWLHLASVPVTLLVVWLGIGKHGLFQAA 63 Query: 126 PFVLSALIACLEALALGLTPDDKWDARYNTGSGKNSESHWILALILVLTVGLGAMGVIAL 185 VLS L+ LEAL LGLTPDD+WD ++N SGK + S W LAL+LV+T+ +GA ++A Sbjct: 64 ALVLSVLLGFLEALVLGLTPDDQWDQKFNPQSGKQTASRWWLALLLVITLAIGATALVAT 123 Query: 186 LARSFDLLFTGGAFG 200 LAR FDLLFTGGAFG Sbjct: 124 LARGFDLLFTGGAFG 138 >ref|YP_004751821.1| hypothetical protein CFU_1166 [Collimonas fungivorans Ter331] gb|AEK60998.1| putative membrane protein, putative signal peptide [Collimonas fungivorans Ter331] Length = 156 Score = 144 bits (362), Expect = 9e-33, Method: Composition-based stats. Identities = 80/147 (54%), Positives = 105/147 (71%), Gaps = 7/147 (4%) Query: 60 PLPSAPR----HKNKTLTTFLATAFGSIGLHRFYLHGGRDRFGWLHILAIPLSLA--LMA 113 P PS P HKNKTL TF+AT FGSIGLHRFYL G +D +GWLH+ +P+SL L Sbjct: 11 PAPSIPHMTQPHKNKTLATFVATVFGSIGLHRFYLKGIKDIWGWLHLATLPISLLAYLFL 70 Query: 114 AQPDAPKLFTGLPFVLSALIACLEALALGLTPDDKWDARYNTGSGKNSESHWILALILVL 173 Q G P ++S L+AC+E+L +GLTPD+KWDA+YN SG+ S+S W + L++VL Sbjct: 71 GQTQQTAFLFG-PLIVSGLVACIESLVIGLTPDEKWDAQYNPDSGRKSDSSWFVVLLVVL 129 Query: 174 TVGLGAMGVIALLARSFDLLFTGGAFG 200 T+G GA+ +I +AR+FDLLFTGGA+G Sbjct: 130 TLGCGAIALIGAIARTFDLLFTGGAYG 156 >ref|YP_001098948.1| hypothetical protein HEAR0622 [Herminiimonas arsenicoxydans] emb|CAL60821.1| conserved hypothetical protein; putative membrane protein [Herminiimonas arsenicoxydans] Length = 197 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 75/192 (39%), Positives = 111/192 (57%), Gaps = 11/192 (5%) Query: 13 RTAASQLVLTEITLRQGLGYTAARPDHNTAASVISGGLQQNKE---TRSMPLPSAPRHKN 69 RT A+++ + +T+R G+ PD + S+ S K +S+ HKN Sbjct: 13 RTGATRMT-SPLTMRSGM------PDIHRELSIFSTKYAAAKPLLPDQSLNQYMTTSHKN 65 Query: 70 KTLTTFLATAFGSIGLHRFYLHGGRDRFGWLHILAIPLSLALMAAQPDAPKLFTGLP-FV 128 KT +T LAT FGS+G HRFYL+G +D + W+ +L ++ AQ L T L F+ Sbjct: 66 KTFSTLLATLFGSLGAHRFYLYGKKDVWAWVAVLIFAALFVVVMAQLPQTLLITFLVLFL 125 Query: 129 LSALIACLEALALGLTPDDKWDARYNTGSGKNSESHWILALILVLTVGLGAMGVIALLAR 188 +S + AL +GLTPD+KWD ++N SG S+S W + L+++LT LG+ +IA +AR Sbjct: 126 ISFFAGLIAALVIGLTPDEKWDKQHNAASGYASDSGWAVILLVILTFALGSTALIAAIAR 185 Query: 189 SFDLLFTGGAFG 200 +FDL TGGAFG Sbjct: 186 AFDLYLTGGAFG 197 >ref|YP_001352280.1| hypothetical protein mma_0590 [Janthinobacterium sp. Marseille] gb|ABR90858.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 116 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 63/134 (47%), Positives = 85/134 (63%), Gaps = 22/134 (16%) Query: 67 HKNKTLTTFLATAFGSIGLHRFYLHGGRDRFGWLHILAIPLSLALMAAQPDAPKLFTGLP 126 HKNKTL+T LAT FG +GLHRFYL+G +D + W+HI+ P S+ F G Sbjct: 5 HKNKTLSTLLATLFGGLGLHRFYLYGKKDLWAWIHIICFPFSI------------FAGF- 51 Query: 127 FVLSALIACLEALALGLTPDDKWDARYNTGSGKNSESHWILALILVLTVGLGAMGVIALL 186 + AL +GLTPD+KWDA++N SG+ S+S W + +++VLT LG+ +IA + Sbjct: 52 ---------IGALVIGLTPDEKWDAQHNAHSGRTSDSGWAVIVLVVLTFALGSTALIATI 102 Query: 187 ARSFDLLFTGGAFG 200 AR FDL TGGAFG Sbjct: 103 ARGFDLYLTGGAFG 116