BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2910.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774920.1| amino acid ABC transporter permease [Herbasp... 368 e-100 ref|YP_841321.1| ABC transporter permease [Ralstonia eutropha H1... 266 2e-69 ref|YP_001525533.1| amino acid ABC transporter permease [Azorhiz... 259 2e-67 ref|YP_004681938.1| ABC transporter permease [Cupriavidus necato... 259 3e-67 ref|YP_002824433.1| ABC transporter permease [Sinorhizobium fred... 257 8e-67 >ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63012.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 212/216 (98%), Positives = 215/216 (99%) Query: 1 MLAEFSFDNFMFLLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 MLAEFSFDNF+FLLEAARWTLLLSALAF+GGGIAGFIVALMRTSHLAPLRLLSAVYIQII Sbjct: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 Query: 61 QGTPVLIILFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 QGTPVLI+LFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS Sbjct: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 Query: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT Sbjct: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 Query: 181 FQPFLVFPIVAGIYFFFCYPLSRFAFALERKYHAHR 216 FQPFLVFPIVAGIYF FCYPLSRFAFALERKYHAHR Sbjct: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216 >ref|YP_841321.1| ABC transporter permease [Ralstonia eutropha H16] emb|CAJ96591.1| ABC-type transporter, permease component: PAAT family [Ralstonia eutropha H16] Length = 216 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 145/216 (67%), Positives = 179/216 (82%) Query: 1 MLAEFSFDNFMFLLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 M+ EFS+++ LL AARWTL ++ LAF+GG +AGF+VAL RTS LRL S YIQ++ Sbjct: 1 MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPMLRLASTAYIQVV 60 Query: 61 QGTPVLIILFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 QGTPVLI+LFLS+YGL++ G KL PMVAA +AM+IY+SAYLGEIWRGCIEAVP QWEAS Sbjct: 61 QGTPVLIVLFLSYYGLSVLGLKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEAS 120 Query: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 ALA+TRWQQLRYV+LPQAVR++LPPTVGF VQ+VKNTSI SIIG++EL +AG+L++NAT Sbjct: 121 EALALTRWQQLRYVVLPQAVRLALPPTVGFSVQLVKNTSITSIIGVIELTRAGQLINNAT 180 Query: 181 FQPFLVFPIVAGIYFFFCYPLSRFAFALERKYHAHR 216 FQPF VF +VA IYF C+PLS A +ER+ H +R Sbjct: 181 FQPFAVFVVVALIYFALCFPLSAAARRMERRLHVNR 216 >ref|YP_001525533.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88615.1| amino acid ABC transporter, permease protein [Azorhizobium caulinodans ORS 571] Length = 219 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 137/211 (64%), Positives = 172/211 (81%) Query: 1 MLAEFSFDNFMFLLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 ++ F ++F+FLLE+ RWTL+L+A+A GGIAG +AL R S L PLRL +A YIQII Sbjct: 2 LVRSFGLNDFIFLLESLRWTLVLTAIALTLGGIAGLFIALARVSPLMPLRLATAAYIQII 61 Query: 61 QGTPVLIILFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 QG+PVL+ILFLS+YGL++ G++LP +VAA+I+M+IY S YLG+IWRGCIEAVP PQWEAS Sbjct: 62 QGSPVLMILFLSYYGLSLIGFQLPALVAASISMSIYVSGYLGDIWRGCIEAVPKPQWEAS 121 Query: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 L MTR QQ R++ILPQA+RI+LPPT GF VQ+VKNTSI SIIG VEL++AG+L++N+T Sbjct: 122 ECLGMTRVQQFRHIILPQALRIALPPTTGFAVQVVKNTSITSIIGFVELSRAGQLINNST 181 Query: 181 FQPFLVFPIVAGIYFFFCYPLSRFAFALERK 211 FQPF VF VA IYF CYPLSR + LERK Sbjct: 182 FQPFRVFLTVAAIYFVICYPLSRLSGWLERK 212 >ref|YP_004681938.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI80706.1| ABC transport system permease protein PAAT family [Cupriavidus necator N-1] Length = 216 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 143/216 (66%), Positives = 180/216 (83%) Query: 1 MLAEFSFDNFMFLLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 M+ EFS+++ LL AARWTL ++ LAF+GG +AGF+VAL RTS LRL S YIQ++ Sbjct: 1 MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPLLRLASTAYIQVV 60 Query: 61 QGTPVLIILFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 QGTPVLI+LFLS+YGL++ G KL PMVAA +AM+IY+SAYLGEIWRGCIEAVP QWEAS Sbjct: 61 QGTPVLIVLFLSYYGLSVLGLKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEAS 120 Query: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 ALA+TRWQQLR+V+LPQAVR++LPPTVGF VQ+VKNTSI SIIG++EL +AG+L++NAT Sbjct: 121 EALALTRWQQLRHVVLPQAVRLALPPTVGFSVQLVKNTSITSIIGVIELTRAGQLINNAT 180 Query: 181 FQPFLVFPIVAGIYFFFCYPLSRFAFALERKYHAHR 216 FQPF VF +VA +YF C+PLS A +ER++H +R Sbjct: 181 FQPFAVFVVVALVYFALCFPLSAAARRMERRFHVNR 216 >ref|YP_002824433.1| ABC transporter permease [Sinorhizobium fredii NGR234] gb|ACP23680.1| putative permease component of ABC transporter [Sinorhizobium fredii NGR234] Length = 219 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 140/213 (65%), Positives = 171/213 (80%) Query: 2 LAEFSFDNFMFLLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQ 61 L F D F FLL + +WT+LL+ +A IGGG+ GF VAL RTS L P+R+ +A YIQIIQ Sbjct: 3 LKTFGLDQFGFLLFSLQWTILLTVIALIGGGLLGFAVALARTSQLKPVRIAAASYIQIIQ 62 Query: 62 GTPVLIILFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121 G PVL+ILFLS+YGL++ G++LPP++AA +MTIY+S YL EIWRGCI+AVP QWEAS Sbjct: 63 GIPVLMILFLSYYGLSLAGFELPPLIAAGASMTIYASGYLAEIWRGCIQAVPKQQWEASE 122 Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181 +LAMTR QQ RYVILPQA+RI LPPTVGF VQ+VKNTSI SIIG VELA+AG+L++NATF Sbjct: 123 SLAMTRLQQYRYVILPQAMRICLPPTVGFAVQVVKNTSITSIIGFVELARAGQLINNATF 182 Query: 182 QPFLVFPIVAGIYFFFCYPLSRFAFALERKYHA 214 QPF VF VA +YF CYPLS+ + LER+ HA Sbjct: 183 QPFRVFLAVAALYFVVCYPLSQLSRLLERRLHA 215