BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2909.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774919.1| amino acid ABC transporter permease [Herbasp... 352 3e-95 ref|YP_003777258.1| amino acid ABC transporter permease [Herbasp... 223 1e-56 ref|YP_004681937.1| PAAT family ABC transporter permease [Cupria... 216 2e-54 ref|YP_001415090.1| polar amino acid ABC transporter inner membr... 214 9e-54 ref|YP_001526199.1| amino acid ABC transporter permease [Azorhiz... 212 3e-53 >ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63011.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 231 Score = 352 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 228/231 (98%), Positives = 228/231 (98%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARLAVTSY 60 M YDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGS PARLAVTSY Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 IEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 IEAAQALAMTR QVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPRRM 231 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPRRM Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPRRM 231 >ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65350.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 131/224 (58%), Positives = 171/224 (76%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARLAVTSY 60 M+Y F F +F + D+LL+GA LTI+LSALS++ G AVG AI A R V +Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE+IR+TP LVQ+F++FFGL SIG ++ A AA++A+TVN+GAY+TEI+RAG+ +IHP Q Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 IEAA+ L M+R V HVVL PA+E+VYP+L SQF L+MLASSI S ISAEELTATANL+ Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLG 224 +ETFRSFE+Y V+ V Y++L+ LFR AFW I + F R+R+LG Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLG 224 >ref|YP_004681937.1| PAAT family ABC transporter permease [Cupriavidus necator N-1] gb|AEI80705.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 252 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 131/217 (60%), Positives = 166/217 (76%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARLAVTSY 60 M+Y F++ + LD+ GA +T+ LS S++ G AVG GAI + GS + A +Y Sbjct: 1 MNYQFEWTPVLSQLDRFAEGAAMTLALSFGSILLGTAVGTAGAIAAAFGSPWLQRATRAY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE IR+TPFL+QLFIIFFGLP++G+Q+DA AA++AMTVNLGAYSTEI+RAG+ A+H SQ Sbjct: 61 VEAIRNTPFLIQLFIIFFGLPTVGLQIDAVTAAVIAMTVNLGAYSTEIIRAGLQAVHRSQ 120 Query: 121 IEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA AL MTR Q+IRHV L PA EKVYPAL SQFTLMML SS+VS IS EELTA A+ + Sbjct: 121 LEAAAALGMTRWQLIRHVALVPAFEKVYPALTSQFTLMMLTSSVVSTISVEELTAVASQV 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVF 217 D++TFR+FE Y++VM +YI LALL R F LIG +VF Sbjct: 181 DSQTFRTFESYILVMFIYIGLALLLRAMFGLIGNLVF 217 >ref|YP_001415090.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS65433.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 227 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 119/226 (52%), Positives = 167/226 (73%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARLAVTSY 60 M Y F FA + + + +G LT++LS ++ + G +G AI G+ + V Y Sbjct: 1 MTYQFDFAALLPYWREFAMGVWLTLQLSFVATVLGFVLGTLCAIGRSDGAPWVKALVACY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE+IR+TP LVQ+FII+FG+ ++G+ VDAN+AA++A+ VN+GAY++EIVRAG+ +IH SQ Sbjct: 61 VEVIRNTPLLVQIFIIYFGIATLGLHVDANVAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA+ L ++R Q HV++ PA+E+VYPAL SQ+ L+MLASSI S ISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVA 226 ++TFRSFE Y+VV VLY+ L+ + R+AFWL GLVVF RRR+LG A Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRIAFWLFGLVVFVRRRKLGTA 226 >ref|YP_001526199.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF89281.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 227 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 119/226 (52%), Positives = 165/226 (73%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARLAVTSY 60 M Y F FA + + +G LT++LS +S + G +G AI G + V +Y Sbjct: 1 MTYQFDFAVLLPFWREFAMGVWLTLQLSLISTVLGFILGTLCAIGRADGPPWVKFLVATY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE+IR+TP LVQ+FI++FG+ ++G+ V AN+AA++A+ VN+GAY++EIVRAG+ +IH SQ Sbjct: 61 VEIIRNTPLLVQVFIVYFGIATLGIHVSANLAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA+ L ++R Q HV++ PA+E+VYPAL SQ+ L+MLASSI S ISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVA 226 ++TFRSFE Y+VV VLY+ L+ + RLAFWL GLVVF RRR+LG A Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRLAFWLFGLVVFVRRRKLGTA 226