BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2908.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774918.1| amino-acid ABC transporter periplasmic prote... 422 e-116 ref|YP_004681936.1| LacI family transcriptional regulator [Cupri... 318 5e-85 ref|YP_841319.1| ABC transporter periplasmic protein [Ralstonia ... 318 5e-85 ref|NP_354406.2| ABC transporter, substrate binding protein (ami... 277 9e-73 ref|ZP_08528294.1| ABC transporter, substrate binding protein (a... 275 5e-72 >ref|YP_003774918.1| amino-acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63010.1| ABC-type amino-acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 260/267 (97%), Positives = 263/267 (98%) Query: 1 MSIKNIFNAKFVALTLAAACAVASAASASAQSIAELTKKGKITIGVVSGTPPFGSVDAKG 60 MSIK IFNAKF+ALTLAAACAVA+ ASASAQSIA+LTKKGKITIGVVSGTPPFGSVDAKG Sbjct: 1 MSIKKIFNAKFLALTLAAACAVATTASASAQSIADLTKKGKITIGVVSGTPPFGSVDAKG 60 Query: 61 VPIGYDVDVANLIGKYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFT 120 PIGYDVDVANLIGKYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFT Sbjct: 61 TPIGYDVDVANLIGKYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFT 120 Query: 121 IPYSGFELSIVGPVGSNYKKLDDLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTV 180 IPYSGFELSIV PVGSNYKKLDDLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTV Sbjct: 121 IPYSGFELSIVAPVGSNYKKLDDLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTV 180 Query: 181 TQALLSNQVDAISIPNTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNF 240 TQALLSNQVDAISIPNTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNF Sbjct: 181 TQALLSNQVDAISIPNTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNF 240 Query: 241 IYYVKLNGELDAISRKWAGPLPNLPVF 267 IYYVKLNGELDAISRKWAGPLPNLPVF Sbjct: 241 IYYVKLNGELDAISRKWAGPLPNLPVF 267 >ref|YP_004681936.1| LacI family transcriptional regulator [Cupriavidus necator N-1] gb|AEI80704.1| ABC transport system permease protein PAAT family [Cupriavidus necator N-1] Length = 267 Score = 318 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 163/259 (62%), Positives = 205/259 (79%), Gaps = 1/259 (0%) Query: 10 KFVALTLAAACAVASAASASAQSIAELTKKGKITIGVVSGTPPFGSVDAKGVPIGYDVDV 69 + A L ++A +A AQ++AE+ KKGK+TIGVV+G PPFG+ DA G P GYDVDV Sbjct: 9 RVAAPVLTLLVLTSAAFTAQAQTVAEIVKKGKVTIGVVTGAPPFGTTDATGKPAGYDVDV 68 Query: 70 ANLIGKYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELS 129 ANL+GKYLG+PV+IVPL P+RIPALE+GKVD L ATLAPTPERA++++F+ PYS FEL+ Sbjct: 69 ANLLGKYLGVPVDIVPLTSPSRIPALEAGKVDFLVATLAPTPERARAIMFSAPYSAFELT 128 Query: 130 IVGPVGSNYKKLDDLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQV 189 I PV + Y KL +L KKKVGV+RG+T D+ALTRLA PG +VRFEDD+T QAL+SNQV Sbjct: 129 IFAPVAAKYAKLTELGKKKVGVTRGTTQDSALTRLAVPGMNIVRFEDDATCAQALISNQV 188 Query: 190 DAISIPNTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGE 249 +AI++PNT NEI+K+RG GK + KF +SVQPNSM VR+ ++EL+QWLN I YVKLNGE Sbjct: 189 EAIALPNTTGNEIMKARGAGKFDAKFAFSVQPNSMAVRRDAFELRQWLNTTISYVKLNGE 248 Query: 250 LDAISRKWAG-PLPNLPVF 267 LDAI++KW G LP L F Sbjct: 249 LDAIAQKWTGKSLPALQAF 267 >ref|YP_841319.1| ABC transporter periplasmic protein [Ralstonia eutropha H16] emb|CAJ96589.1| ABC-type transporter, periplasmic component: PAAT family [Ralstonia eutropha H16] Length = 267 Score = 318 bits (815), Expect = 5e-85, Method: Composition-based stats. Identities = 160/246 (65%), Positives = 202/246 (82%), Gaps = 1/246 (0%) Query: 23 ASAASASAQSIAELTKKGKITIGVVSGTPPFGSVDAKGVPIGYDVDVANLIGKYLGLPVE 82 ++A +A AQ++AE+ KKG++TIGVV+G PPFG+ DA G P GYDVDVANL+GKYLG+PV+ Sbjct: 22 SAAFTAQAQTVAEIVKKGRVTIGVVTGAPPFGTTDATGKPAGYDVDVANLLGKYLGVPVD 81 Query: 83 IVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVGPVGSNYKKLD 142 IVPL P+RIPALE+GKVD L ATLAPTPERA++++F+ PYS FEL+I PV + Y +L Sbjct: 82 IVPLTSPSRIPALEAGKVDFLVATLAPTPERARAIMFSAPYSAFELTIFAPVAAKYARLT 141 Query: 143 DLVKKKVGVSRGSTNDTALTRLAPPGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEI 202 +L KKKVGV+RG+T DTALTRLA PG +VRFEDD+T QAL+SNQV+AI++PNT NEI Sbjct: 142 ELGKKKVGVTRGTTQDTALTRLAVPGMNIVRFEDDATCAQALISNQVEAIALPNTTGNEI 201 Query: 203 VKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG-PL 261 +K+RG GK + KF +SVQPNSM VR+ ++EL+QWLN I YVKLNGELDAI++KW G L Sbjct: 202 MKARGAGKFDAKFAFSVQPNSMAVRRDAFELRQWLNTTISYVKLNGELDAIAQKWTGKAL 261 Query: 262 PNLPVF 267 P L F Sbjct: 262 PALQAF 267 >ref|NP_354406.2| ABC transporter, substrate binding protein (amino acid) [Agrobacterium tumefaciens str. C58] gb|AAK87191.2| ABC transporter, substrate binding protein (amino acid) [Agrobacterium tumefaciens str. C58] Length = 267 Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats. Identities = 150/269 (55%), Positives = 189/269 (70%), Gaps = 4/269 (1%) Query: 1 MSIKNIFNAKFVALTLAAACAVASAASASAQSIAELTKKGKITIGVVSGTPPFGSVDAKG 60 MSI F K VA +A + + SA+AQS+ ++ K+G + IGV+ G PPFGSVDA+G Sbjct: 1 MSIFQSF--KSVAAAIAVCAGIFTGFSANAQSVDDIVKRGSVKIGVLVGAPPFGSVDAQG 58 Query: 61 VPIGYDVDVANLIGKYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFT 120 P+GYD DVA LIGKYLG+PV +V L PP+RIPALESGKVD L ATLAPTPERAK+V+FT Sbjct: 59 NPVGYDADVATLIGKYLGVPVTMVQLTPPSRIPALESGKVDFLVATLAPTPERAKAVMFT 118 Query: 121 IPYSGFELSIVGPVGSNYKKLDDLVKKKVGVSRGSTNDTA-LTRLAPPGTVLVRFEDDST 179 PYS F++ I + +K +DL VGV+RGS+ + + R G ++RF+DD+T Sbjct: 119 NPYSAFQVGIYSHKDTKIEKWEDLKGMTVGVNRGSSVEREFVNREKELGLTILRFDDDAT 178 Query: 180 VTQALLSNQVDAISIPNTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNN 239 QAL S QV AI+ P+ AN +K RG EVKF +S+QPNSMTVRK + +L QWLNN Sbjct: 179 TMQALFSGQVQAIAGPDAQANAAIKLRGDTTTEVKFFFSIQPNSMTVRKDAVDLHQWLNN 238 Query: 240 FIYYVKLNGELDAISRKWAG-PLPNLPVF 267 IYY+K NGELDAI+RKW G PLP LP F Sbjct: 239 TIYYIKQNGELDAIARKWVGTPLPVLPTF 267 >ref|ZP_08528294.1| ABC transporter, substrate binding protein (amino acid) [Agrobacterium sp. ATCC 31749] gb|EGL64736.1| ABC transporter, substrate binding protein (amino acid) [Agrobacterium sp. ATCC 31749] Length = 267 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 148/269 (55%), Positives = 188/269 (69%), Gaps = 4/269 (1%) Query: 1 MSIKNIFNAKFVALTLAAACAVASAASASAQSIAELTKKGKITIGVVSGTPPFGSVDAKG 60 MSI F K VA +A + + SA+AQS+ ++ K+G + IGV+ G PPFGSVDA+G Sbjct: 1 MSIFQSF--KSVAAAIAVCAGIFTGFSANAQSVDDIVKRGSVKIGVLVGAPPFGSVDAQG 58 Query: 61 VPIGYDVDVANLIGKYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFT 120 P+GYD DVA LIGKYLG+PV +V L PP+RIPALESGKVD L ATLAPTPERAK+V+FT Sbjct: 59 NPVGYDADVATLIGKYLGVPVTMVQLTPPSRIPALESGKVDFLVATLAPTPERAKAVMFT 118 Query: 121 IPYSGFELSIVGPVGSNYKKLDDLVKKKVGVSRGSTNDTA-LTRLAPPGTVLVRFEDDST 179 PYS F++ I + +K +DL VGV+RGS+ + + R G ++RF+DD+T Sbjct: 119 NPYSAFQVGIYSHKDTKIEKWEDLKGMTVGVNRGSSVEREFVNREKELGLTILRFDDDAT 178 Query: 180 VTQALLSNQVDAISIPNTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNN 239 QAL S QV AI+ P+ AN +K RG E+KF +S+QPNSMTVRK + +L QWLNN Sbjct: 179 TMQALFSGQVQAIAGPDAQANAAIKLRGDTTTEMKFFFSMQPNSMTVRKDAVDLHQWLNN 238 Query: 240 FIYYVKLNGELDAISRKWAG-PLPNLPVF 267 IYY+K NGELD I+RKW G PLP LP F Sbjct: 239 TIYYIKQNGELDTIARKWVGTPLPVLPTF 267