BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2906.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774917.1| LacI family transcription regulator protein ... 508 e-142 ref|YP_004849237.1| lacI family transcriptional regulator [Pseud... 289 4e-76 ref|ZP_03699934.1| transcriptional regulator, LacI family [Lutie... 289 5e-76 ref|YP_004113911.1| LacI family transcriptional regulator [Panto... 247 1e-63 ref|NP_250949.1| transcriptional regulator PtxS [Pseudomonas aer... 242 7e-62 >ref|YP_003774917.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63009.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 382 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 265/304 (87%), Positives = 278/304 (91%), Gaps = 2/304 (0%) Query: 1 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA 60 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA Sbjct: 77 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA 136 Query: 61 ALHSYSVEGLLFNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATH 120 ALHSYSVEGLLFNTQGRNVTPL ELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLAT Sbjct: 137 ALHSYSVEGLLFNTQGRNVTPLHELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATR 196 Query: 121 HLLAQGYTDIALVVQPLFGVSSRQGRQAGFLQAMAQRPDCHGETLEVDVDQPGHVATTLD 180 HLLAQGYTDIALVVQ L+GVSSRQGRQAGFLQAM++R DCHG+TLEVDV+QPGHVAT L Sbjct: 197 HLLAQGYTDIALVVQSLYGVSSRQGRQAGFLQAMSERRDCHGQTLEVDVEQPGHVATVLR 256 Query: 181 DFLKRRRSRNSAGKVALLAGNGMVSLQIALALQSMKLRFPDDVGLLCFDELAWSPLVGSG 240 +F RR S G+VALLAGNGMVSLQIALALQSMKL FPDDVGLLCFDELAWSPLVGSG Sbjct: 257 EFFLRR--ARSGGRVALLAGNGMVSLQIALALQSMKLSFPDDVGLLCFDELAWSPLVGSG 314 Query: 241 ISTIEQPTYDIGFTAIERLLVRIHGERSVRMEMLLDPRLICRGSTASVDGHPQRALVSGI 300 ISTIEQPTY+IGFTAIERLLVRI GERSVRMEMLLD RLI RGSTA+V RA + + Sbjct: 315 ISTIEQPTYEIGFTAIERLLVRIQGERSVRMEMLLDGRLISRGSTAAVTAQEGRACSARL 374 Query: 301 VSKM 304 +K+ Sbjct: 375 AAKL 378 >ref|YP_004849237.1| lacI family transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK78823.1| transcriptional regulator, LacI family [Pseudogulbenkiania sp. NH8B] Length = 350 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 160/288 (55%), Positives = 203/288 (70%), Gaps = 5/288 (1%) Query: 1 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA 60 MARGLKGGRTRLIG++VAD++NPYSVA+LHGAEA CQ+HGYTLMLCNTGNDEAREKQ+L Sbjct: 67 MARGLKGGRTRLIGLVVADVMNPYSVAILHGAEAVCQQHGYTLMLCNTGNDEAREKQALT 126 Query: 61 ALHSYSVEGLLFNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATH 120 L SY VEGL+ ++QGR + +L ++ PVVL+DR V G + DLVGLDN +A ++AT Sbjct: 127 MLRSYDVEGLIVHSQGRPSRFMYDLLESNLPVVLVDRRVSGIEVDLVGLDNRQACRVATV 186 Query: 121 HLLAQGYTDIALVVQPLFGVSSRQGRQAGFLQAMAQRPDCHGETLEV-DVDQPGHVATTL 179 HL+ +G+TDI V QP+ VSSR+ R FL+ +A RPDC GETLE+ ++ + L Sbjct: 187 HLIERGFTDILYVTQPIRAVSSREERHTAFLETLAARPDCRGETLELAALEDDAALDHAL 246 Query: 180 DDFLKRRRSRNSAGKVALLAGNGMVSLQIALALQSMKLRFPDDVGLLCFDELAWSPLVGS 239 F+ SR + ALLA +G+V+LQ+ LAL+ + L P VGLL FDEL+WS LV Sbjct: 247 AAFM----SRAGTQRKALLAASGVVTLQLVLALRRLGLTVPQQVGLLGFDELSWSKLVEP 302 Query: 240 GISTIEQPTYDIGFTAIERLLVRIHGERSVRMEMLLDPRLICRGSTAS 287 GIST+ QPT +IGF A RLL RI E+LL LI RGST + Sbjct: 303 GISTLAQPTDEIGFQAATRLLQRIATPGHDHHELLLPGTLIERGSTTA 350 >ref|ZP_03699934.1| transcriptional regulator, LacI family [Lutiella nitroferrum 2002] gb|EEG07237.1| transcriptional regulator, LacI family [Lutiella nitroferrum 2002] Length = 350 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 160/288 (55%), Positives = 203/288 (70%), Gaps = 5/288 (1%) Query: 1 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA 60 MARGLKGGRTRLIG++VAD++NPYSVA+LHGAEA CQ+HGYTLMLCNTGNDEAREKQ+L Sbjct: 67 MARGLKGGRTRLIGLVVADVMNPYSVAILHGAEAVCQQHGYTLMLCNTGNDEAREKQALT 126 Query: 61 ALHSYSVEGLLFNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATH 120 L SY VEGL+ ++QGR + +L ++ PVVL+DR V G + DLVGLDN +A + AT Sbjct: 127 MLRSYDVEGLIVHSQGRPSRFMYDLLESNLPVVLVDRRVSGIEVDLVGLDNRQAGRAATV 186 Query: 121 HLLAQGYTDIALVVQPLFGVSSRQGRQAGFLQAMAQRPDCHGETLEV-DVDQPGHVATTL 179 HL+ +G+TDI V QP+ VSSR+ R FL+ +A RPDC GETLE+ ++ + L Sbjct: 187 HLIERGFTDILYVTQPIRAVSSREERHTAFLETLAARPDCRGETLELAALEGDAALDHAL 246 Query: 180 DDFLKRRRSRNSAGKVALLAGNGMVSLQIALALQSMKLRFPDDVGLLCFDELAWSPLVGS 239 F+ SR + ALLA +G+V+LQ+ LAL+ + L P VGLL FDEL+WS LV Sbjct: 247 AAFM----SRAGTQRKALLAASGVVTLQLVLALRRLGLTVPQQVGLLGFDELSWSKLVEP 302 Query: 240 GISTIEQPTYDIGFTAIERLLVRIHGERSVRMEMLLDPRLICRGSTAS 287 GIST+ QPT +IGF A RLL RI E+LL LI RGST++ Sbjct: 303 GISTLAQPTDEIGFQAATRLLERIATPGHDHHELLLPGTLIVRGSTSA 350 >ref|YP_004113911.1| LacI family transcriptional regulator [Pantoea sp. At-9b] gb|ADU67355.1| transcriptional regulator, LacI family [Pantoea sp. At-9b] Length = 341 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 128/289 (44%), Positives = 185/289 (64%), Gaps = 4/289 (1%) Query: 1 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA 60 MARGLK GRTRLIG+++ADI NPYSV VL G EAAC+ HG+TL++CNT N+ E+ L Sbjct: 57 MARGLKRGRTRLIGLIIADITNPYSVDVLSGIEAACRAHGFTLLMCNTNNEVDLEQHYLQ 116 Query: 61 ALHSYSVEGLLFNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATH 120 L SY VEG++ N G + L+ L Q+ P+VL+DR + D+VGL+N +AAQLAT Sbjct: 117 LLSSYQVEGIVVNAVGMHEDILKRLQQSMLPMVLIDRKIPDFACDVVGLNNPEAAQLATQ 176 Query: 121 HLLAQGYTDIALVVQPLFGVSSRQGRQAGFLQAMAQRPDCHGETLEVDVDQPGHVATTLD 180 HLL GY + + +PL V++R+ R A F +A +P E EV + QP + L Sbjct: 177 HLLDNGYEALLFLSEPLGSVNTRRERLASFFSTVASQPAVQAENTEVALHQPAQMDAALR 236 Query: 181 DFLKRRRSRNSAGKVALLAGNGMVSLQIALALQSMKLRFPDDVGLLCFDELAWSPLVGSG 240 DF R++ + A++A NG ++LQ+A ALQ + L + + +GLL FDEL W+ L G G Sbjct: 237 DF----HQRHAGKRCAVMAANGALTLQVARALQRLNLSWGESIGLLGFDELEWAALAGVG 292 Query: 241 ISTIEQPTYDIGFTAIERLLVRIHGERSVRMEMLLDPRLICRGSTASVD 289 I+T++QPT+ IG+ A+E+++ RI G+ E + LI RGS+ ++ Sbjct: 293 ITTLKQPTWQIGYAALEKVIARIEGDDHPISEQVFSGELIVRGSSQPLN 341 >ref|NP_250949.1| transcriptional regulator PtxS [Pseudomonas aeruginosa PAO1] ref|ZP_01365623.1| hypothetical protein PaerPA_01002749 [Pseudomonas aeruginosa PACS2] ref|ZP_04928598.1| transcriptional regulator PtxS [Pseudomonas aeruginosa C3719] gb|AAG05647.1|AE004651_9 transcriptional regulator PtxS [Pseudomonas aeruginosa PAO1] gb|AAC26482.1| PtxS [Pseudomonas aeruginosa PAO1] gb|EAZ52717.1| transcriptional regulator PtxS [Pseudomonas aeruginosa C3719] gb|AEO75264.1| transcriptional regulator PtxS [Pseudomonas aeruginosa M18] Length = 340 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 141/293 (48%), Positives = 180/293 (61%), Gaps = 14/293 (4%) Query: 1 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA 60 MARGLK GRTRLIGMLVADILNPYSVAV+HG E AC++HGY+L++CNT D+ +E+ LA Sbjct: 61 MARGLKRGRTRLIGMLVADILNPYSVAVMHGVETACREHGYSLVVCNTDRDDEQERHHLA 120 Query: 61 ALHSYSVEGLLFNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATH 120 AL SY+VEGL+ NT G + LR L P+VL+DR + D DLVGLDN A + A Sbjct: 121 ALQSYNVEGLIVNTLGHHPGELRAL-HRELPMVLVDRQLAELDTDLVGLDNADAVEQALD 179 Query: 121 HLLAQGYTDIALVVQPLFGVSSRQGRQAGFLQAMAQRPDCHGETLEVDVDQPGHVATTLD 180 HL +G+ DI LV +PL G SSR R F ++ +RP G+ L+ D Sbjct: 180 HLQHRGFRDILLVTEPLDGTSSRIERVQAFNASIGRRPALKGQVLQTD--------DFFR 231 Query: 181 DFLKRRRSRNSAGKVALLAGNGMVSLQIALALQSMKLRFPDDVGLLCFDELAWSPLVGSG 240 D L+ S + G AL NG+ +L L+ + R D+VGLL DEL W PLVGSG Sbjct: 232 DGLRAFLSASGPGPKALFTCNGVATLCATRQLRDLGCRLFDEVGLLALDELDWYPLVGSG 291 Query: 241 ISTIEQPTYDIGFTAIERLLVRIHGERSVRMEMLLDPRLICRGSTASVDGHPQ 293 I+ + QPT +IG TA ERLL R+ G+R + +LI RGST HP+ Sbjct: 292 ITALAQPTDEIGRTAFERLLARLEGDREPARRVTFPAQLIVRGST-----HPR 339