BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2902.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774913.1| hypothetical protein Hsero_1490 [Herbaspiril...   134   5e-30
ref|YP_969921.1| hypothetical protein Aave_1558 [Acidovorax citr...    74   7e-12
gb|EGR71105.1| hypothetical protein HUSEC_27321 [Escherichia col...    72   3e-11
emb|CAG25573.1| MchS3 protein [Escherichia coli] >gi|284922936|e...    72   3e-11
ref|YP_004499955.1| hypothetical protein SerAS12_1511 [Serratia ...    67   8e-10

>ref|YP_003774913.1| hypothetical protein Hsero_1490 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63005.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 146

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 79/142 (55%), Positives = 96/142 (67%), Gaps = 2/142 (1%)

Query: 7   LTLSCSLLMLASAFSTRAVEALA--DDLAQLRQTPTFALGQVGFIGHISDSEQRYRRLLQ 64
           + LS  L ML++     +   L   +DL  L++TPTFALGQVGFIGHIS SEQ YRRLL+
Sbjct: 1   MRLSTILCMLSTPTCMLSCSRLPVNEDLQALQRTPTFALGQVGFIGHISQSEQHYRRLLK 60

Query: 65  SPAALELFTRLIDDGSATKEARLYAACALRKLNAAQFVQLTNGLRKEGGHVSVLRTDILQ 124
           S  AL +F +L+D   AT EARLYAAC L  L  AQF   T  LR  G  VSVLRTDILQ
Sbjct: 61  SSDALAVFMQLVDAEQATPEARLYAACGLHALAPAQFDNATRRLRDSGLQVSVLRTDILQ 120

Query: 125 RESIQDQLQNIAQHGCADAHWR 146
           RE +  +L +IAQHGC +A+W+
Sbjct: 121 REPVARKLDHIAQHGCDNAYWQ 142


>ref|YP_969921.1| hypothetical protein Aave_1558 [Acidovorax citrulli AAC00-1]
 gb|ABM32147.1| hypothetical protein Aave_1558 [Acidovorax citrulli AAC00-1]
          Length = 185

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 55/100 (55%)

Query: 41  FALGQVGFIGHISDSEQRYRRLLQSPAALELFTRLIDDGSATKEARLYAACALRKLNAAQ 100
           F LG  GF GHIS+ E+    + ++P A++ F+ +IDD S+T  A+LYA C ++K  A  
Sbjct: 84  FTLGHAGFAGHISEPERYMEMVAKNPNAVKFFSGVIDDASSTSVAKLYALCGMKKAGARD 143

Query: 101 FVQLTNGLRKEGGHVSVLRTDILQRESIQDQLQNIAQHGC 140
                  + K GG VS +  D +Q+E I   +  I   GC
Sbjct: 144 LQSYEEKVLKVGGKVSTMHGDQMQKEEIGFFVHRIRTGGC 183


>gb|EGR71105.1| hypothetical protein HUSEC_27321 [Escherichia coli O104:H4 str.
           LB226692]
          Length = 144

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)

Query: 35  LRQTPTFALGQVGFIGHISDSEQRYRRLLQSPAALELFTRLIDDGSATKEARLYAACALR 94
           L +T  F++G  GFIG+ S+ E+ Y  +L      E+F  +I +  +TKE+++YAAC L 
Sbjct: 31  LEKTTYFSIGMNGFIGYQSEGEKLYTHILTLDNPEEIFKNIIKNRKSTKESKIYAACGLY 90

Query: 95  KLNAAQFVQLTNGLRKEGGHVSVLRTDILQRESIQDQLQNIAQHGC 140
            LN      L N   K+  +VSVLR DIL +  + D L ++  +GC
Sbjct: 91  YLNVENIESLFNKNDKQ-EYVSVLRGDILTKIKLNDILNSVIINGC 135


>emb|CAG25573.1| MchS3 protein [Escherichia coli]
 emb|CBG36027.1| conserved hypothetical protein [Escherichia coli 042]
          Length = 144

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)

Query: 35  LRQTPTFALGQVGFIGHISDSEQRYRRLLQSPAALELFTRLIDDGSATKEARLYAACALR 94
           L +T  F++G  GFIG+ S+ E+ Y  +L      E+F  +I +  +TKE+++YAAC L 
Sbjct: 31  LEKTTYFSIGMNGFIGYQSEGEKLYTHILTLDNPEEIFKNIIKNRKSTKESKIYAACGLY 90

Query: 95  KLNAAQFVQLTNGLRKEGGHVSVLRTDILQRESIQDQLQNIAQHGC 140
            LN      L N   K+  +VSVLR DIL +  + D L ++  +GC
Sbjct: 91  YLNVENIESLFNENDKQ-EYVSVLRGDILTKIKLNDILNSVIINGC 135


>ref|YP_004499955.1| hypothetical protein SerAS12_1511 [Serratia sp. AS12]
 ref|YP_004504907.1| hypothetical protein SerAS9_1511 [Serratia sp. AS9]
 gb|AEF44646.1| hypothetical protein SerAS9_1511 [Serratia sp. AS9]
 gb|AEF49598.1| hypothetical protein SerAS12_1511 [Serratia sp. AS12]
 gb|AEG27305.1| hypothetical protein SerAS13_1512 [Serratia sp. AS13]
          Length = 141

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 5   LPLTLSCSLLMLASAFSTRAVEALADDLAQLRQTPTFALGQVGFIGHISDSEQRYRRLLQ 64
           L  T  CSL   A+  +   +E        L Q   F+LG   F G +S+ E     +L+
Sbjct: 10  LFFTSLCSLYGYANEKNYETIET------NLSQIGYFSLGMNSFAGKVSEGEVAVIDILK 63

Query: 65  SPAALELFTRLIDDGSATKEARLYAACALRKLNAAQFVQLTNGLRKE-GGHVSVLRTDIL 123
           S  A ++F R+ ++  AT E++LYAAC L++L       + +   KE    VS+L+ DIL
Sbjct: 64  SKGATDIFLRIANNPKATPESKLYAACGLKQLGKLNNNDVKSIFEKEWDDDVSILKADIL 123

Query: 124 QRESIQDQLQNIAQHGC 140
           ++E  +     I  HGC
Sbjct: 124 RKEKFKYLYFGILNHGC 140