BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2900.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_373530.1| hypothetical protein Bcep18194_B2775 [Burkholde... 187 2e-45 ref|ZP_02908945.1| conserved hypothetical protein [Burkholderia ... 174 2e-41 ref|YP_001810021.1| hypothetical protein BamMC406_3337 [Burkhold... 173 2e-41 ref|YP_777058.1| hypothetical protein Bamb_5175 [Burkholderia am... 173 3e-41 ref|ZP_02888146.1| conserved hypothetical protein [Burkholderia ... 173 3e-41 >ref|YP_373530.1| hypothetical protein Bcep18194_B2775 [Burkholderia sp. 383] gb|ABB12886.1| hypothetical protein Bcep18194_B2775 [Burkholderia sp. 383] Length = 315 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 113/292 (38%), Positives = 155/292 (53%), Gaps = 22/292 (7%) Query: 6 RTMLAFFAIIGALTTNLPVAMAVEQPFTFSPEKGLTVKVTPVDATHVKLHILPSGKVQSV 65 R+ML ++ A + P A A + TF + +T +V D+ H+ + LPSGK Q++ Sbjct: 41 RSML----LLAACASITPAAHAAKPLLTFKVDDTVTARVERADSEHITVRFLPSGKTQTL 96 Query: 66 LVTEGNSAPATNVDRRFEAKDFNFDGHADLAVVTSEGMVNEVYDIFLYRPESQDFTKLEV 125 VT + ++ + D+NFDGH DLA+ + GMVN+ Y I+LY P Q F L + Sbjct: 97 DVTAADEEGHYHL----SSDDYNFDGHRDLAMHATLGMVNDSYGIYLYDPARQQFEPLHL 152 Query: 126 PKQAGP--SCYTLEGVEIRPRERVLQSSCRSGSVWYTEAYRFDQGGRLYLYSVIRILNDV 183 P P +C L V+ +P+ER L SSCR G +WYT+AYRFD G+LYLY ++ Sbjct: 153 PASNMPHGNCDDLINVQAKPKERTLYSSCRGGPIWYTDAYRFDASGKLYLYQS----SEA 208 Query: 184 VASHLCPGASGRESPEVIRLRFDQAGNVVAAACRPYENWKDVSADSRVQLTVGVPTLPLH 243 + L P + L FD G V+ RP D V V LPLH Sbjct: 209 IPDDLRDLLDTDSGPSSMLLTFDAQGKRVSR--RP-----DAYGGGIVTFKVRPARLPLH 261 Query: 244 DAEDDKPARRHLIKGDVVEVIDVSEDGGWWLKVLYRNPKRGPLVGWIRADEA 295 DA +D P RR+++ GD VE+ID S D WLKV YRNP G + GW+ A EA Sbjct: 262 DAMNDAPTRRYVVAGDTVELIDASADFQ-WLKVRYRNPHAGVVQGWVSAKEA 312 >ref|ZP_02908945.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] gb|EDT39922.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] Length = 286 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 108/266 (40%), Positives = 139/266 (52%), Gaps = 18/266 (6%) Query: 32 FTFSPEKGLTVKVTPVDATHVKLHILPSGKVQSVLVTEGNSAPATNVDRRFEAKDFNFDG 91 TF + +T +V D + + LPS K Q + V + R + D+NFDG Sbjct: 34 LTFKVDDAVTARVEHADGARITIRFLPSDKTQVLDVGVSDEEG----HYRLASDDYNFDG 89 Query: 92 HADLAVVTSEGMVNEVYDIFLYRPESQDFTKLEVPKQAGP--SCYTLEGVEIRPRERVLQ 149 H DLA GMVNE Y IFLY Q F L +P + P +C L V+ +P ER L Sbjct: 90 HRDLAAYALLGMVNEHYGIFLYDAAHQRFEPLSLPAASMPHGNCDDLINVQAKPNERTLY 149 Query: 150 SSCRSGSVWYTEAYRFDQGGRLYLYSVIRILNDVVASHLCPGASGRESPEVIRLRFDQAG 209 SSCRSG +WYT+AYRFD GRLYL+ + D + L G SG P + L +D G Sbjct: 150 SSCRSGPIWYTDAYRFDGNGRLYLHQSSEAIPDDLRD-LFDGDSG---PSSMLLTYDAHG 205 Query: 210 NVVAAACRPYENWKDVSADSRVQLTVGVPTLPLHDAEDDKPARRHLIKGDVVEVIDVSED 269 V+ RP D +V V LPLHDA +D P RR+++ GD +E+ID S D Sbjct: 206 KRVSR--RP-----DAYGGGKVTFKVRPARLPLHDAMNDAPTRRYVVAGDTLELIDASAD 258 Query: 270 GGWWLKVLYRNPKRGPLVGWIRADEA 295 WLKVLYRNP+ GW+ A EA Sbjct: 259 FQ-WLKVLYRNPRGDRSQGWVSAKEA 283 >ref|YP_001810021.1| hypothetical protein BamMC406_3337 [Burkholderia ambifaria MC40-6] gb|ACB65805.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6] Length = 286 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 110/270 (40%), Positives = 141/270 (52%), Gaps = 26/270 (9%) Query: 32 FTFSPEKGLTVKVTPVDATHVKLHILPSGKVQSVLV----TEGNSAPATNVDRRFEAKDF 87 TF + +T +V D T + + LPSGK Q V EG+ R + D+ Sbjct: 34 LTFKVDDAVTARVEHADGTRITIRFLPSGKTQVFDVGISDEEGHY--------RLASDDY 85 Query: 88 NFDGHADLAVVTSEGMVNEVYDIFLYRPESQDFTKLEVPKQAGP--SCYTLEGVEIRPRE 145 NFDGH DLA GMVNE Y IFLY Q F L +P + P +C L V+ +P E Sbjct: 86 NFDGHRDLAGYALLGMVNERYGIFLYDAAHQRFEPLSLPAASMPHGNCDDLINVQAKPNE 145 Query: 146 RVLQSSCRSGSVWYTEAYRFDQGGRLYLYSVIRILNDVVASHLCPGASGRESPEVIRLRF 205 R L SSCR G +WYT+AYRFD R+YL+ + D + L G SG P + L + Sbjct: 146 RTLYSSCRGGPIWYTDAYRFDGDDRMYLHQSSEAIPDDLRD-LFDGDSG---PPSMLLTY 201 Query: 206 DQAGNVVAAACRPYENWKDVSADSRVQLTVGVPTLPLHDAEDDKPARRHLIKGDVVEVID 265 D G V+ RP D +V V LPLHDA +D P RR+++ GD +E+ID Sbjct: 202 DAHGKRVSR--RP-----DAYGGGKVTFKVRPARLPLHDAMNDAPTRRYVVAGDTLELID 254 Query: 266 VSEDGGWWLKVLYRNPKRGPLVGWIRADEA 295 S D WLKVLYRNP+ G GW+ A EA Sbjct: 255 ASADFQ-WLKVLYRNPRGGSSQGWVSAKEA 283 >ref|YP_777058.1| hypothetical protein Bamb_5175 [Burkholderia ambifaria AMMD] gb|ABI90724.1| conserved hypothetical protein [Burkholderia ambifaria AMMD] Length = 286 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 104/266 (39%), Positives = 136/266 (51%), Gaps = 18/266 (6%) Query: 32 FTFSPEKGLTVKVTPVDATHVKLHILPSGKVQSVLVTEGNSAPATNVDRRFEAKDFNFDG 91 TF + +T +V + + + LPSGK Q + V + R + D+NFDG Sbjct: 34 LTFKVDDAVTARVEHAEGARITIRFLPSGKTQVLDVGVSDEEG----HYRLASDDYNFDG 89 Query: 92 HADLAVVTSEGMVNEVYDIFLYRPESQDFTKLEVPKQAGP--SCYTLEGVEIRPRERVLQ 149 H DLA GMV+E Y IFLY Q F L +P P +C L V+ +P ER L Sbjct: 90 HRDLAAYALLGMVDEHYGIFLYDAAHQRFEPLNLPAAGMPHGNCDDLINVQAKPNERTLY 149 Query: 150 SSCRSGSVWYTEAYRFDQGGRLYLYSVIRILNDVVASHLCPGASGRESPEVIRLRFDQAG 209 SSCR G +WYT+AYRFD GR+YL+ +D + L G P + L +D G Sbjct: 150 SSCRGGPIWYTDAYRFDGNGRMYLHQS----SDAIPDDLHDLFDGDSGPPSMLLTYDAHG 205 Query: 210 NVVAAACRPYENWKDVSADSRVQLTVGVPTLPLHDAEDDKPARRHLIKGDVVEVIDVSED 269 V+ RP D +V V LPLHDA +D P RR+++ GD +E+ID S D Sbjct: 206 KRVSR--RP-----DAYGGGKVTFKVRPARLPLHDAMNDAPTRRYVVAGDTLELIDASAD 258 Query: 270 GGWWLKVLYRNPKRGPLVGWIRADEA 295 WLKVLYRNP G GW+ A EA Sbjct: 259 FE-WLKVLYRNPHGGSSQGWVSAKEA 283 >ref|ZP_02888146.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gb|EDT06456.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] Length = 286 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 104/266 (39%), Positives = 136/266 (51%), Gaps = 18/266 (6%) Query: 32 FTFSPEKGLTVKVTPVDATHVKLHILPSGKVQSVLVTEGNSAPATNVDRRFEAKDFNFDG 91 TF + +T +V D + + LPSGK Q + V + R + D+NFDG Sbjct: 34 LTFKVDDAVTARVEHDDGARITIRFLPSGKTQVLDVGVSDEEG----HYRLASDDYNFDG 89 Query: 92 HADLAVVTSEGMVNEVYDIFLYRPESQDFTKLEVPKQAGP--SCYTLEGVEIRPRERVLQ 149 H DLA GMVNE Y IF+Y Q F L +P + P +C L V+ +P ER L Sbjct: 90 HRDLAAYALLGMVNEHYGIFVYDAAHQRFEPLNLPAGSMPHGNCDDLINVQAKPNERTLY 149 Query: 150 SSCRSGSVWYTEAYRFDQGGRLYLYSVIRILNDVVASHLCPGASGRESPEVIRLRFDQAG 209 SSCR G +WYT+AYRFD GR+YL+ + D V G P + L +D G Sbjct: 150 SSCRGGPIWYTDAYRFDGNGRMYLHQSSEAIPDDVRDLF----DGDAGPSSMLLTYDAQG 205 Query: 210 NVVAAACRPYENWKDVSADSRVQLTVGVPTLPLHDAEDDKPARRHLIKGDVVEVIDVSED 269 V+ RP D +V V LPLHDA +D P RR+++ GD +E+ID S D Sbjct: 206 KRVSR--RP-----DAYGGGKVTFKVRPARLPLHDAMNDAPTRRYVVAGDTLELIDASTD 258 Query: 270 GGWWLKVLYRNPKRGPLVGWIRADEA 295 WLKVLYRNP+ G W+ A EA Sbjct: 259 FQ-WLKVLYRNPRGGSSQSWVSAKEA 283