BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2897.p (376 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_04947384.1| hypothetical protein BDAG_03355 [Burkholderia... 508 e-142 ref|YP_002908724.1| type VI secretion protein [Burkholderia glum... 499 e-139 ref|ZP_02905201.1| type VI secretion protein, VC_A0111 family [B... 477 e-132 ref|YP_003607776.1| type VI secretion protein, VC_A0111 family [... 473 e-131 ref|ZP_02381172.1| hypothetical protein BuboB_25860 [Burkholderi... 471 e-131 >ref|ZP_04947384.1| hypothetical protein BDAG_03355 [Burkholderia dolosa AUO158] gb|EAY70555.1| hypothetical protein BDAG_03355 [Burkholderia dolosa AUO158] Length = 363 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 258/364 (70%), Positives = 298/364 (81%), Gaps = 4/364 (1%) Query: 12 MSQDDYPKLDSLVASLLARAPQMNFMQLCRLLELGVPEWTGFATQDAVRHEPVRFRPRPR 71 M D P LD LVASLLARAP++NFMQLCRLLEL P F T+D +EPVRFRPRPR Sbjct: 1 MKLHDLPNLDPLVASLLARAPKLNFMQLCRLLELRAPAQPAFGTRDTAEYEPVRFRPRPR 60 Query: 72 MGFPAGEVAAVEFDDDHPEAPPTVLTTFMGLYGVDATMPSHMVDEIALREEGHEAVQSFL 131 +GFPAGE+A+VEFDD+ P+APPTV TTFMGLYGVDA MP HM+DEI LREEGHE V++FL Sbjct: 61 VGFPAGEIASVEFDDERPDAPPTVRTTFMGLYGVDAAMPPHMIDEIVLREEGHEVVETFL 120 Query: 132 DQFNHRYVALLYRAWKKYRYPEQFGSGGSDPHSRRLLCLGGLGWGDKPKRAGLPDSRMLA 191 DQFNHR V LLYRAWKKYRYPE F +GG+D HSR LLCL G GWGDKPKRAGLPDSRMLA Sbjct: 121 DQFNHRIVTLLYRAWKKYRYPESFRAGGTDAHSRNLLCLAGFGWGDKPKRAGLPDSRMLA 180 Query: 192 LLGLLIQRTRTPEGLGGVVALAIPGVGVRIEEFFPVFTSTGKAKPLSS-GAAAVGSSDRG 250 LLGLLIQRTRT EG+ GV+ALA+P VGVR++EFFP T G+ +PL+S G AA+ D G Sbjct: 181 LLGLLIQRTRTSEGIAGVIALAVPRVGVRVDEFFPAITRAGQPRPLTSVGTAAL---DDG 237 Query: 251 RGAGLGGGYVLGKQVAYRSRAVRVTLQPADDQQAHGLLPGEPLHKDLMAFVQLYVGVKAD 310 GLGGGYVLG+++AYRSRAVRVT++PAD QQAH LLPG LH++LMAFVQLYVG KAD Sbjct: 238 VRRGLGGGYVLGRRLAYRSRAVRVTVRPADAQQAHDLLPGAWLHRELMAFVQLYVGTKAD 297 Query: 311 VHLSMQLPARLVPKPAIGRSSAGHTPRLGWTTLLSCAEEKLINIPLGIYEAFPVPPPNPY 370 VHL M++ +RL PKPAIG + AG PRLGWTT+L EE+ IN+ LG+YEAFP P PNP+ Sbjct: 298 VHLRMEISSRLAPKPAIGPALAGPAPRLGWTTVLPADEERFINVALGVYEAFPTPKPNPH 357 Query: 371 LTPQ 374 LTP+ Sbjct: 358 LTPR 361 >ref|YP_002908724.1| type VI secretion protein [Burkholderia glumae BGR1] gb|ACR31489.1| type VI secretion protein, VC_A0111 family [Burkholderia glumae BGR1] Length = 373 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 252/360 (70%), Positives = 299/360 (83%), Gaps = 1/360 (0%) Query: 15 DDYPKLDSLVASLLARAPQMNFMQLCRLLELGVPEWTGFATQDAVRHEPVRFRPRPRMGF 74 D+ P L+ LVASLLARAP+MNFMQLCRLLE VP+ GF T+D++ HE VRFRPRPR+GF Sbjct: 13 DELPNLEPLVASLLARAPRMNFMQLCRLLEAQVPDAPGFGTRDSLEHERVRFRPRPRLGF 72 Query: 75 PAGEVAAVEFDDDHPEAPPTVLTTFMGLYGVDATMPSHMVDEIALREEGHEAVQSFLDQF 134 PAGE+A+VE DD P+APPT+ TTFMGLYGVDA +P+HM+DEI REEGHEAV++FLDQF Sbjct: 73 PAGEMASVELDDARPDAPPTIRTTFMGLYGVDAAVPAHMIDEIVRREEGHEAVEAFLDQF 132 Query: 135 NHRYVALLYRAWKKYRYPEQFGSGGSDPHSRRLLCLGGLGWGDKPKRAGLPDSRMLALLG 194 NHRYV LLYRAWKKYRYPE F +GG+D HSR LLCL G GWGDKP+RAGLPDSRMLALLG Sbjct: 133 NHRYVTLLYRAWKKYRYPESFRAGGADAHSRNLLCLAGFGWGDKPRRAGLPDSRMLALLG 192 Query: 195 LLIQRTRTPEGLGGVVALAIPGVGVRIEEFFPVFTSTGKAKPLSSGAAAVGSSDRGRGAG 254 LLIQ TRTPEGL GV+ALA+PGVGVR++EFFP T G+ +PL+S +++ G G Sbjct: 193 LLIQHTRTPEGLAGVIALAVPGVGVRVDEFFPALTRAGQPRPLTS-TGEAAAAEDGARRG 251 Query: 255 LGGGYVLGKQVAYRSRAVRVTLQPADDQQAHGLLPGEPLHKDLMAFVQLYVGVKADVHLS 314 LGG YVLG+++AYRSRAVRVTL+PAD +QAH LLPG LH++LMAFVQLYVGVKADVHL Sbjct: 252 LGGSYVLGRRIAYRSRAVRVTLRPADARQAHDLLPGAWLHRELMAFVQLYVGVKADVHLR 311 Query: 315 MQLPARLVPKPAIGRSSAGHTPRLGWTTLLSCAEEKLINIPLGIYEAFPVPPPNPYLTPQ 374 M++ +RL P+PAIG +S G PRLGWTT+L AE +L+NI LG+YEAFP P PNPYL + Sbjct: 312 MEISSRLAPEPAIGPASTGPAPRLGWTTVLRAAEARLVNIALGVYEAFPTPAPNPYLAAR 371 >ref|ZP_02905201.1| type VI secretion protein, VC_A0111 family [Burkholderia ambifaria MEX-5] gb|EDT43668.1| type VI secretion protein, VC_A0111 family [Burkholderia ambifaria MEX-5] Length = 385 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 241/356 (67%), Positives = 285/356 (80%) Query: 19 KLDSLVASLLARAPQMNFMQLCRLLELGVPEWTGFATQDAVRHEPVRFRPRPRMGFPAGE 78 +L ++ +L ARAP+M FMQ CRLLE PE TGF T+D +EPVRFRPRPR+GFPAGE Sbjct: 28 RLPAIAGTLFARAPKMTFMQFCRLLEACAPERTGFGTRDTPEYEPVRFRPRPRLGFPAGE 87 Query: 79 VAAVEFDDDHPEAPPTVLTTFMGLYGVDATMPSHMVDEIALREEGHEAVQSFLDQFNHRY 138 +AAVEFDD+ P+APPTV TTFMGLYGVDA MPSHM+DEI LREEGHEAV++FLD FNHR Sbjct: 88 MAAVEFDDERPDAPPTVRTTFMGLYGVDAAMPSHMIDEIVLREEGHEAVEAFLDPFNHRT 147 Query: 139 VALLYRAWKKYRYPEQFGSGGSDPHSRRLLCLGGLGWGDKPKRAGLPDSRMLALLGLLIQ 198 LLYRAWKKYRYPE F +GG D +S+ LLCL G GWGDKP RAGLPDSRMLALLGLLIQ Sbjct: 148 ATLLYRAWKKYRYPEHFRAGGVDDYSQSLLCLAGFGWGDKPLRAGLPDSRMLALLGLLIQ 207 Query: 199 RTRTPEGLGGVVALAIPGVGVRIEEFFPVFTSTGKAKPLSSGAAAVGSSDRGRGAGLGGG 258 RTRT EGL GVVALA PGV VR++EF+ V TSTG+ KPL+S + G+ GLGGG Sbjct: 208 RTRTSEGLAGVVALAAPGVDVRVDEFWAVTTSTGRPKPLTSAKPGADALSDGKRNGLGGG 267 Query: 259 YVLGKQVAYRSRAVRVTLQPADDQQAHGLLPGEPLHKDLMAFVQLYVGVKADVHLSMQLP 318 YVLG+++AYRSRAV VTL+PA+ +QA LLPG LH+++MAFVQLYVGVKADVHL M++ Sbjct: 268 YVLGRRLAYRSRAVCVTLRPANARQAQDLLPGAWLHREVMAFVQLYVGVKADVHLRMEVS 327 Query: 319 ARLVPKPAIGRSSAGHTPRLGWTTLLSCAEEKLINIPLGIYEAFPVPPPNPYLTPQ 374 +R VP PA+G AG PRLGWTT+L A+E++I+I LGIYEA P PNP+L P+ Sbjct: 328 SRFVPHPAVGGEHAGPAPRLGWTTVLPSADERMIDIALGIYEALPASKPNPHLVPR 383 >ref|YP_003607776.1| type VI secretion protein, VC_A0111 family [Burkholderia sp. CCGE1002] gb|ADG18265.1| type VI secretion protein, VC_A0111 family [Burkholderia sp. CCGE1002] Length = 378 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 255/366 (69%), Positives = 293/366 (80%), Gaps = 6/366 (1%) Query: 13 SQDDYPKLDSLVASLLARAPQMNFMQLCRLLELGVPEWTGFATQDAVRHEPVRFRPRPRM 72 ++D+ L+ LVA+LLARAP+MNFMQLCRLLEL P+ GF T+D HEPVRFRPR R Sbjct: 10 ARDEPRNLEPLVAALLARAPRMNFMQLCRLLELRAPDHAGFGTRDTPAHEPVRFRPRART 69 Query: 73 GFPAGEVAAVEFDDDHP-----EAPPTVLTTFMGLYGVDATMPSHMVDEIALREEGHEAV 127 GFP GE+AAVEFDDD +APPTV TTFMGLYGVDA MPSHM+DEI LREEGHEAV Sbjct: 70 GFPTGEIAAVEFDDDPDAFGGGDAPPTVRTTFMGLYGVDAAMPSHMIDEIVLREEGHEAV 129 Query: 128 QSFLDQFNHRYVALLYRAWKKYRYPEQFGSGGSDPHSRRLLCLGGLGWGDKPKRAGLPDS 187 ++FLDQFNHR+V LLYRAWKKYRYPE F +GGSD HSR LLCL G GWGDKP+RAGLPDS Sbjct: 130 EAFLDQFNHRFVTLLYRAWKKYRYPESFRAGGSDAHSRNLLCLAGFGWGDKPQRAGLPDS 189 Query: 188 RMLALLGLLIQRTRTPEGLGGVVALAIPGVGVRIEEFFPVFTSTGKAKPLSSGAAAVGSS 247 R+LALLGLLIQRTRTPEGL GV+ALA+PGV VR++EFFP GK +PL+S A G++ Sbjct: 190 RLLALLGLLIQRTRTPEGLAGVIALAVPGVDVRVDEFFPAPARVGKPQPLTSLATRAGAT 249 Query: 248 -DRGRGAGLGGGYVLGKQVAYRSRAVRVTLQPADDQQAHGLLPGEPLHKDLMAFVQLYVG 306 D G GLGGGYVLGK++AYRSRAVRVTL+PAD QAH LLPG LH++LMAFVQLYVG Sbjct: 250 NDNGARRGLGGGYVLGKRLAYRSRAVRVTLRPADAAQAHDLLPGAWLHRELMAFVQLYVG 309 Query: 307 VKADVHLSMQLPARLVPKPAIGRSSAGHTPRLGWTTLLSCAEEKLINIPLGIYEAFPVPP 366 VKADVHL M++ +RL P PAI AG PRLGWTT+L E+LIN+ LG+ +AFP P Sbjct: 310 VKADVHLHMKISSRLAPLPAIHGGPAGPAPRLGWTTVLPAMSERLINVGLGVCQAFPKPA 369 Query: 367 PNPYLT 372 NPYLT Sbjct: 370 ANPYLT 375 >ref|ZP_02381172.1| hypothetical protein BuboB_25860 [Burkholderia ubonensis Bu] Length = 379 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 258/365 (70%), Positives = 293/365 (80%), Gaps = 4/365 (1%) Query: 12 MSQDDYPKLDSLVASLLARAPQMNFMQLCRLLELGVPEWTGFATQDAVRHEPVRFRPRPR 71 M + P LD LVASLLARAP+M+FMQLCRLLEL V + F QDAV HEPVRFRPRPR Sbjct: 12 MRSVELPNLDPLVASLLARAPRMSFMQLCRLLELRVSDRPVFGMQDAVEHEPVRFRPRPR 71 Query: 72 MGFPAGEVAAVEFDDDHP----EAPPTVLTTFMGLYGVDATMPSHMVDEIALREEGHEAV 127 MGFPAGEVA+VE DD +A PT+ TTFMGLYGVDA +PSHMVDEIALREEGHE V Sbjct: 72 MGFPAGEVASVELDDGSDTFGLDARPTLRTTFMGLYGVDAAVPSHMVDEIALREEGHEVV 131 Query: 128 QSFLDQFNHRYVALLYRAWKKYRYPEQFGSGGSDPHSRRLLCLGGLGWGDKPKRAGLPDS 187 ++FLDQFNHR+V LLYRAWKKYRYPE F GGSD HSR LL L G GWGDKPKRAGLPDS Sbjct: 132 EAFLDQFNHRFVTLLYRAWKKYRYPESFRPGGSDAHSRNLLSLVGFGWGDKPKRAGLPDS 191 Query: 188 RMLALLGLLIQRTRTPEGLGGVVALAIPGVGVRIEEFFPVFTSTGKAKPLSSGAAAVGSS 247 RMLALLGLLIQRTRTPEGL GVVALA+P VGVR++EF+PV TSTG+ +PL+S + Sbjct: 192 RMLALLGLLIQRTRTPEGLAGVVALAVPRVGVRVDEFWPVVTSTGRPQPLTSVGGIAEAQ 251 Query: 248 DRGRGAGLGGGYVLGKQVAYRSRAVRVTLQPADDQQAHGLLPGEPLHKDLMAFVQLYVGV 307 + G+ GLG GYVLGK++AYR RAVRVTLQPAD QQA LLPG LH++LMAFVQLYVGV Sbjct: 252 ENGKRKGLGRGYVLGKRMAYRGRAVRVTLQPADAQQAQALLPGASLHRELMAFVQLYVGV 311 Query: 308 KADVHLSMQLPARLVPKPAIGRSSAGHTPRLGWTTLLSCAEEKLINIPLGIYEAFPVPPP 367 KADVHL M++ +RL P PAIG + G PRLGWTT+L E ++INI LG+Y+AFP P P Sbjct: 312 KADVHLRMEVSSRLAPLPAIGPTYHGSAPRLGWTTVLPADEARVINIALGVYQAFPAPGP 371 Query: 368 NPYLT 372 NP+LT Sbjct: 372 NPHLT 376