BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2895.p (526 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_04947386.1| hypothetical protein BDAG_03357 [Burkholderia... 726 0.0 ref|ZP_04942205.1| hypothetical protein BCPG_03738 [Burkholderia... 722 0.0 ref|YP_002908726.1| type VI secretion-associated protein [Burkho... 708 0.0 ref|ZP_02381170.1| ImpA, N-terminal [Burkholderia ubonensis Bu] 694 0.0 ref|YP_003607778.1| type VI secretion-associated protein, VC_A01... 682 0.0 >ref|ZP_04947386.1| hypothetical protein BDAG_03357 [Burkholderia dolosa AUO158] gb|EAY70557.1| hypothetical protein BDAG_03357 [Burkholderia dolosa AUO158] Length = 672 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 393/526 (74%), Positives = 434/526 (82%), Gaps = 2/526 (0%) Query: 3 LSGLFKGLSSGRADAEQLVQERLEAWNGWLLPLSGEKGIGRDPGYEDLFFSLREETQKLS 62 L GLFK L R DAEQL + RL+AW+ WL L G+ G+GRDPGYED FF LREETQKLS Sbjct: 147 LGGLFKSLFPARDDAEQLARSRLDAWSAWLQLLPGDAGVGRDPGYEDTFFELREETQKLS 206 Query: 63 GIDDGLILRSCEQLLKETGKDLRLAGYYALARLRLDGPAGFADGLELAAALVERFGEVVL 122 GIDDGLI+RSCEQL++ETGKDLRLAGYYA ARLR DGPAGFADGLELAAALV+RFGE VL Sbjct: 207 GIDDGLIIRSCEQLIRETGKDLRLAGYYAFARLRQDGPAGFADGLELAAALVDRFGEAVL 266 Query: 123 PGRAEAKKGALEMLATARIMDLLDSRGALASADLARALAALDVIISATSLWPEAARPNLQ 182 P RAEAKKGALEMLATAR+++LL+SRG A DL RALAALDV+++ T WPEAARPNLQ Sbjct: 267 PARAEAKKGALEMLATARMIELLESRGEFAPIDLERALAALDVLVAHTGAWPEAARPNLQ 326 Query: 183 ALVTRFERNGEPIGNTDVQA-ITATTPKTLTSTGTITSTRDLLDQARAMAFWLRDQQQGY 241 LV+RFER EP D A + A ++G I STRDL++QAR MA WLRDQ+ GY Sbjct: 327 RLVSRFERKNEPARRVDQDAGMPAAPSTATAASGAIASTRDLVEQARTMAVWLRDQENGY 386 Query: 242 LPATRLIRVVRWDTLHELPPEDASQRTRLMPPRSELRQQMKRLVLQKQWHELLERVEAAF 301 LP+ RL+R VRWDTLHE+PP DA+ TRL PPRSELRQQMKRLVLQKQWHELLER+E AF Sbjct: 387 LPSVRLVRSVRWDTLHEVPPADAAFCTRLAPPRSELRQQMKRLVLQKQWHELLERIEGAF 446 Query: 302 MEGANHLWFDLQCLQHQALQQVGAPYDDWGDLLRADFALFLERLPGIERLAFNDGTPFAE 361 MEG NHLWFDLQ QH AL VG PY W +LLRADFALFLERLPGIERLAFNDGTPFA+ Sbjct: 447 MEGVNHLWFDLQYFQHVALDHVGTPYSTWRELLRADFALFLERLPGIERLAFNDGTPFAD 506 Query: 362 DATLEWIARHAVVRDLEAGESVVPLPVSA-DDGGDTGDWQEIEAQAREISAREGLEAAFT 420 DATLEWIARHAVVRDLEAGESVVPLPVSA + G GDW EIEAQARE++ REG+EAAF Sbjct: 507 DATLEWIARHAVVRDLEAGESVVPLPVSAGSEDGAGGDWPEIEAQARELAGREGIEAAFG 566 Query: 421 WLEVLPGMSTDRHRFLQRLVMARLADHGGRPDTALALLAALDTKLLSLSLSRWEPGLAFE 480 WLE LPG+ TDRHR+LQRLVMARLADH GR DTALALLA LDT+ SL L+ WEP L FE Sbjct: 567 WLEALPGLKTDRHRYLQRLVMARLADHAGRADTALALLAELDTRARSLPLTSWEPALVFE 626 Query: 481 VKQQLVRAMKAVGARKDADKTMLIRRIGELQAELTVLDPARAMTLS 526 V+QQLVRA+KA RKDADK L RRIGELQAELTVLDPARA+TLS Sbjct: 627 VRQQLVRALKATSNRKDADKPALARRIGELQAELTVLDPARALTLS 672 >ref|ZP_04942205.1| hypothetical protein BCPG_03738 [Burkholderia cenocepacia PC184] gb|EAY65376.1| hypothetical protein BCPG_03738 [Burkholderia cenocepacia PC184] Length = 531 Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats. Identities = 387/528 (73%), Positives = 434/528 (82%), Gaps = 3/528 (0%) Query: 1 MKLSGLFKGLSSGRADAEQLVQERLEAWNGWLLPLSGEKGIGRDPGYEDLFFSLREETQK 60 M L+ K L G D E + R + W+ WL PL+G+ G+GRDPGYED FF LR+ETQK Sbjct: 5 MTLANFVKTLVGGNRD-ESFNKTRCDTWDAWLQPLAGDSGVGRDPGYEDAFFELRDETQK 63 Query: 61 LSGIDDGLILRSCEQLLKETGKDLRLAGYYALARLRLDGPAGFADGLELAAALVERFGEV 120 LSGIDDGLI+RSCEQL+KETGKDLRLAGY+A ARLR DGPAGFADGLELAA LV+RFGE Sbjct: 64 LSGIDDGLIVRSCEQLIKETGKDLRLAGYFAFARLRQDGPAGFADGLELAATLVDRFGEA 123 Query: 121 VLPGRAEAKKGALEMLATARIMDLLDSRGALASADLARALAALDVIISATSLWPEAARPN 180 +LP RAEAKKGALEMLAT R+++LLDSRG A ADL R+LAALDV++ TS WPEAARPN Sbjct: 124 MLPARAEAKKGALEMLATTRMIELLDSRGEFAPADLERSLAALDVLVIGTSAWPEAARPN 183 Query: 181 LQALVTRFERNGEPIGNTDVQ-AITATTPKTLTSTGTITSTRDLLDQARAMAFWLRDQQQ 239 LQ L+ RF R EP ++ + A+ +++ + G I STRDLLDQARAMA WLRDQ+ Sbjct: 184 LQPLIARFARKDEPTRGSEPEIAMPSSSGAASGTPGAIVSTRDLLDQARAMAVWLRDQEN 243 Query: 240 GYLPATRLIRVVRWDTLHELPPEDASQRTRLMPPRSELRQQMKRLVLQKQWHELLERVEA 299 GYLP+ R++R VRWDTLHE+PP DA+ TRL+PPR ELRQQMKRLVLQKQWHELLERVE Sbjct: 244 GYLPSVRIVRSVRWDTLHEVPPADAASHTRLVPPRGELRQQMKRLVLQKQWHELLERVEG 303 Query: 300 AFMEGANHLWFDLQCLQHQALQQVGAPYDDWGDLLRADFALFLERLPGIERLAFNDGTPF 359 AFMEGANHLWFDLQ QH AL VGAPY W +LLRADFALFLERLPGIERL FNDGTPF Sbjct: 304 AFMEGANHLWFDLQYFQHVALDHVGAPYHTWRELLRADFALFLERLPGIERLRFNDGTPF 363 Query: 360 AEDATLEWIARHAVVRDLEAGESVVPLPVSADDGGDT-GDWQEIEAQAREISAREGLEAA 418 A+D TLEWIARHAVVRDLEAGE+V PLPVSA GDT GDW EIEAQAR+++AREG+EAA Sbjct: 364 ADDTTLEWIARHAVVRDLEAGEAVAPLPVSAGSVGDTAGDWPEIEAQARDVAAREGIEAA 423 Query: 419 FTWLEVLPGMSTDRHRFLQRLVMARLADHGGRPDTALALLAALDTKLLSLSLSRWEPGLA 478 F WLE LPGM TDRHR+LQRLVMARLADH GRPDTALALLA LDT SL L RWEP LA Sbjct: 424 FAWLEALPGMRTDRHRYLQRLVMARLADHAGRPDTALALLAELDTSSRSLPLMRWEPALA 483 Query: 479 FEVKQQLVRAMKAVGARKDADKTMLIRRIGELQAELTVLDPARAMTLS 526 FEVKQQLVRA+KA+ RKDADK L RRIG+LQAELTVLDPARA+TLS Sbjct: 484 FEVKQQLVRALKAMSNRKDADKGALARRIGDLQAELTVLDPARALTLS 531 >ref|YP_002908726.1| type VI secretion-associated protein [Burkholderia glumae BGR1] gb|ACR31491.1| type VI secretion-associated protein, VC_A0119 family [Burkholderia glumae BGR1] Length = 528 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 391/528 (74%), Positives = 435/528 (82%), Gaps = 2/528 (0%) Query: 1 MKLSGLFKGLSSGRADAEQLVQERLEAWNGWLLPLSGEKGIGRDPGYEDLFFSLREETQK 60 M L GLFK L R DAEQL + RL+AW+ WLLPL+G+ G+GRDPGYED FF+LREETQK Sbjct: 1 MMLGGLFKRLFPTRDDAEQLARTRLDAWHAWLLPLAGDTGVGRDPGYEDTFFALREETQK 60 Query: 61 LSGIDDGLILRSCEQLLKETGKDLRLAGYYALARLRLDGPAGFADGLELAAALVERFGEV 120 LSGIDDGLI+ CEQLLKETGKDLRLAGYYA ARLR DGP+GFADGLELAAALV+R+GE Sbjct: 61 LSGIDDGLIVSGCEQLLKETGKDLRLAGYYAFARLRQDGPSGFADGLELAAALVDRYGET 120 Query: 121 VLPGRAEAKKGALEMLATARIMDLLDSRGALASADLARALAALDVIISATSLWPEAARPN 180 VLP RAEAK+GALEMLAT R++++L+SRGA A ADL RALAALDV+++ T W +AARPN Sbjct: 121 VLPARAEAKRGALEMLATTRMIEMLESRGAFAPADLERALAALDVLVACTQTWSDAARPN 180 Query: 181 LQALVTRFERNGEPIGNTDVQAITATTPKTLTST-GTITSTRDLLDQARAMAFWLRDQQQ 239 LQAL++RFERN EP + A + T+ GTITS RDLLDQAR MA WLRDQ+ Sbjct: 181 LQALISRFERNNEPALTAEQGAAVPSPLSAATAAFGTITSARDLLDQARTMAVWLRDQEN 240 Query: 240 GYLPATRLIRVVRWDTLHELPPEDASQRTRLMPPRSELRQQMKRLVLQKQWHELLERVEA 299 GYLP+ RL+R VRWDTLHE+PP DA+ TRL+ PR ELRQQMKRLVLQKQWHELLERVE Sbjct: 241 GYLPSVRLVRSVRWDTLHEVPPADAASHTRLVAPRGELRQQMKRLVLQKQWHELLERVEG 300 Query: 300 AFMEGANHLWFDLQCLQHQALQQVGAPYDDWGDLLRADFALFLERLPGIERLAFNDGTPF 359 AFMEG NHLWFDLQ QH AL +GAPY W LRADFALFLERLPGIERLAF DGTPF Sbjct: 301 AFMEGVNHLWFDLQYFQHVALDHIGAPYSGWRAQLRADFALFLERLPGIERLAFADGTPF 360 Query: 360 AEDATLEWIARHAVVRDLEAGESVVPLPVSADDGGD-TGDWQEIEAQAREISAREGLEAA 418 A+DATLEWIARHAVVRDLEAGESV PLPVSA+ GD GDW EIEAQARE++ REG+EAA Sbjct: 361 ADDATLEWIARHAVVRDLEAGESVAPLPVSAESVGDAAGDWPEIEAQARELAGREGVEAA 420 Query: 419 FTWLEVLPGMSTDRHRFLQRLVMARLADHGGRPDTALALLAALDTKLLSLSLSRWEPGLA 478 F WLE LPGM TDRHR+LQRLVMARLAD RPDTALALLA LD +L L+RWEP L Sbjct: 421 FAWLEALPGMKTDRHRYLQRLVMARLADQASRPDTALALLAELDASSRTLPLTRWEPALV 480 Query: 479 FEVKQQLVRAMKAVGARKDADKTMLIRRIGELQAELTVLDPARAMTLS 526 FEVKQQLVRA+KA+ RKDADK L RRIGELQAELTVLDPARA+TLS Sbjct: 481 FEVKQQLVRALKAMSNRKDADKPALARRIGELQAELTVLDPARALTLS 528 >ref|ZP_02381170.1| ImpA, N-terminal [Burkholderia ubonensis Bu] Length = 526 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 393/527 (74%), Positives = 431/527 (81%), Gaps = 2/527 (0%) Query: 1 MKLSGLFKGLSSGRADAEQLVQERLEAWNGWLLPLSGEKGIGRDPGYEDLFFSLREETQK 60 M L+ K L G D + L + RL+AW+ WL PL+G+ G+GRDPGYED FF LR+ETQK Sbjct: 1 MTLANFVKTLVGGNRD-DSLKKARLDAWDAWLQPLAGDSGVGRDPGYEDAFFELRDETQK 59 Query: 61 LSGIDDGLILRSCEQLLKETGKDLRLAGYYALARLRLDGPAGFADGLELAAALVERFGEV 120 LSGIDDGLI+RSCEQL+KETGKDLRLAGYYA ARLR DGPAGFAD LELAAALV+RFGE Sbjct: 60 LSGIDDGLIVRSCEQLIKETGKDLRLAGYYAFARLRQDGPAGFADALELAAALVDRFGEA 119 Query: 121 VLPGRAEAKKGALEMLATARIMDLLDSRGALASADLARALAALDVIISATSLWPEAARPN 180 +LP RAEAKKGALEMLAT R++DLLDSRGA A DL RALAALDV+ + + WPEAARPN Sbjct: 120 MLPARAEAKKGALEMLATTRMLDLLDSRGAFAPVDLERALAALDVLSADMATWPEAARPN 179 Query: 181 LQALVTRFERNGEPIGNTDVQAITATTPKTLTSTGTITSTRDLLDQARAMAFWLRDQQQG 240 LQ LV RF RN E NT + +T+ T + S+ I STRDLLDQAR MA WLRDQ+ G Sbjct: 180 LQPLVARFARNDESARNTAPEPVTSLTATSHASSDAIASTRDLLDQARRMAAWLRDQENG 239 Query: 241 YLPATRLIRVVRWDTLHELPPEDASQRTRLMPPRSELRQQMKRLVLQKQWHELLERVEAA 300 YLP+ RL+R VRWDTLHE+PP D + RTRL+PPRSELRQQMKRLVLQKQWHELLERVE A Sbjct: 240 YLPSVRLVRSVRWDTLHEVPPADVAARTRLVPPRSELRQQMKRLVLQKQWHELLERVEGA 299 Query: 301 FMEGANHLWFDLQCLQHQALQQVGAPYDDWGDLLRADFALFLERLPGIERLAFNDGTPFA 360 FMEG NHLWFDLQ QH AL VGAPY+ W LLRADFALFLERLPG+ERLAFNDGTPFA Sbjct: 300 FMEGVNHLWFDLQYFQHVALDHVGAPYNTWRALLRADFALFLERLPGVERLAFNDGTPFA 359 Query: 361 EDATLEWIARHAVVRDLEAGESVVPLPVSADDGGD-TGDWQEIEAQAREISAREGLEAAF 419 +D TLEWIARHAVVRDLEAGE+V PLPVSAD GD GDW EIEAQARE+ AREG+EAAF Sbjct: 360 DDTTLEWIARHAVVRDLEAGETVAPLPVSADSEGDAAGDWPEIEAQARELGAREGVEAAF 419 Query: 420 TWLEVLPGMSTDRHRFLQRLVMARLADHGGRPDTALALLAALDTKLLSLSLSRWEPGLAF 479 WLE LPGM TDRHR+LQRLVMARLADH GRPDTALALLA LD SL L RWEP L F Sbjct: 420 AWLEALPGMRTDRHRYLQRLVMARLADHSGRPDTALALLAELDASSRSLPLMRWEPALVF 479 Query: 480 EVKQQLVRAMKAVGARKDADKTMLIRRIGELQAELTVLDPARAMTLS 526 EVKQQLVRA+KA RKDADK L RRI ELQAELTVLDPARA+TLS Sbjct: 480 EVKQQLVRALKATSNRKDADKPALARRIVELQAELTVLDPARALTLS 526 >ref|YP_003607778.1| type VI secretion-associated protein, VC_A0119 family [Burkholderia sp. CCGE1002] gb|ADG18267.1| type VI secretion-associated protein, VC_A0119 family [Burkholderia sp. CCGE1002] Length = 528 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 371/528 (70%), Positives = 423/528 (80%), Gaps = 6/528 (1%) Query: 3 LSGLFKGLSSGRADAEQLVQERLEAWNGWLLPLSGEKGIGRDPGYEDLFFSLREETQKLS 62 L+ L K L R D EQ V+ RL+ W+ WL PL GE+G GRDPGYEDLFF LREETQKLS Sbjct: 2 LASLLKTLFPSR-DEEQRVRARLDTWSAWLQPLPGEQGCGRDPGYEDLFFELREETQKLS 60 Query: 63 GIDDGLILRSCEQLLKETGKDLRLAGYYALARLRLDGPAGFADGLELAAALVERFGEVVL 122 GIDD L++RSCEQLLKETGKDLRLAGYYA ARLR DGP GFADGLELAA+LVERFGE VL Sbjct: 61 GIDDSLVVRSCEQLLKETGKDLRLAGYYAFARLRADGPLGFADGLELAASLVERFGENVL 120 Query: 123 PGRAEAKKGALEMLATARIMDLLDSRGALASADLARALAALDVIISATSLWPEAARPNLQ 182 P RAEAKKGAL+MLAT R+++LLDSRG A+ADL RA+AALD++++ T+ W +AARPNL Sbjct: 121 PARAEAKKGALDMLATTRVIELLDSRGEFATADLERAIAALDLLVTRTATWTDAARPNLA 180 Query: 183 ALVTRFERNGEPIGNTDVQAITATTPKTLTSTGT----ITSTRDLLDQARAMAFWLRDQQ 238 AL+ RFE+N +++A T G+ I STRDLLDQAR+M WLRDQ+ Sbjct: 181 ALIARFEQNEASSRGNELEAATLPVSSGQAFAGSVNVSIASTRDLLDQARSMGLWLRDQE 240 Query: 239 QGYLPATRLIRVVRWDTLHELPPEDASQRTRLMPPRSELRQQMKRLVLQKQWHELLERVE 298 GYL + RL+R VRWDTLHE+PP DA+ RTRLMPPR ELRQQMKRLVLQKQWHELLERVE Sbjct: 241 NGYLSSVRLVRTVRWDTLHEVPPVDATSRTRLMPPRGELRQQMKRLVLQKQWHELLERVE 300 Query: 299 AAFMEGANHLWFDLQCLQHQALQQVGAPYDDWGDLLRADFALFLERLPGIERLAFNDGTP 358 AF+EG NHLWFDLQ QH AL VGAPY W D LRADFALFLERLPGIERLAFNDGTP Sbjct: 301 GAFLEGVNHLWFDLQYFQHVALDHVGAPYSAWRDQLRADFALFLERLPGIERLAFNDGTP 360 Query: 359 FAEDATLEWIARHAVVRDLEAGESVVPLPVSA-DDGGDTGDWQEIEAQAREISAREGLEA 417 FA+DA+LEWIARHAVVR+L+AGES+ PLPV+A D TGDW EIEAQAR+++ R+G+EA Sbjct: 361 FADDASLEWIARHAVVRNLDAGESIAPLPVAAGSDDEATGDWPEIEAQARDLAERDGIEA 420 Query: 418 AFTWLEVLPGMSTDRHRFLQRLVMARLADHGGRPDTALALLAALDTKLLSLSLSRWEPGL 477 AF WL+ LPG+ TDR R+LQRLVMARLAD GR DTAL LL LDT SL L+RWEP L Sbjct: 421 AFAWLDALPGLRTDRQRYLQRLVMARLADRAGRADTALGLLTELDTTARSLPLTRWEPAL 480 Query: 478 AFEVKQQLVRAMKAVGARKDADKTMLIRRIGELQAELTVLDPARAMTL 525 FEVKQQL+R +KA+ RKDADK L RRIGELQAELTVLDPARA+T Sbjct: 481 VFEVKQQLLRTLKALSNRKDADKPALARRIGELQAELTVLDPARALTF 528