BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2891.p         (85 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02381167.1| PAAR [Burkholderia ubonensis Bu]                   119   2e-25
ref|YP_001807994.1| PAAR repeat-containing protein [Burkholderia...    74   8e-12
ref|YP_586932.1| hypothetical protein Rmet_4801 [Cupriavidus met...    73   1e-11
ref|ZP_02911354.1| PAAR repeat-containing protein [Burkholderia ...    73   1e-11
ref|YP_002909652.1| PAAR repeat-containing protein [Burkholderia...    71   6e-11

>ref|ZP_02381167.1| PAAR [Burkholderia ubonensis Bu]
          Length = 85

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/85 (78%), Positives = 72/85 (84%)

Query: 1  MKSLVYEGDSTSHGGKILTGSDRINVKGRRVARVGDKVSCPIHGENEIVEGGYIMTDGTT 60
          MK+LVYEGD+TSHGGKILTGSDRI VKGRR ARVGDKVSCPIHG+NEIVEG   M DGT 
Sbjct: 1  MKNLVYEGDATSHGGKILTGSDRIKVKGRRAARVGDKVSCPIHGDNEIVEGSDRMKDGTM 60

Query: 61 PISREGDHARCGAVLIASSGGVLVR 85
          P+S +GDH RCGA LIASS G  VR
Sbjct: 61 PLSCDGDHTRCGAALIASSSGAQVR 85


>ref|YP_001807994.1| PAAR repeat-containing protein [Burkholderia ambifaria MC40-6]
 gb|ACB63778.1| PAAR repeat-containing protein [Burkholderia ambifaria MC40-6]
          Length = 83

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 1  MKSLVYEGDSTSHGGKILTGSDRINVKGRRVARVGDKVSCPIHGE---NEIVEGGYIMTD 57
          M +L+  GD T HGGK++TGS ++   GR VAR GD+V+CP H E   N IVEG   MTD
Sbjct: 1  MMNLIRVGDDTDHGGKVITGSSKMRFDGRFVARKGDEVTCPQHPEIKPNLIVEGDESMTD 60

Query: 58 GTTPISREGDHARCGAVLIAS 78
             PI+R G  A CG  LI+S
Sbjct: 61 DGVPIARHGHRATCGCCLISS 81


>ref|YP_586932.1| hypothetical protein Rmet_4801 [Cupriavidus metallidurans CH34]
 gb|ABF11663.1| conserved hypothetical protein with PAAR motif [Cupriavidus
          metallidurans CH34]
          Length = 88

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 2/87 (2%)

Query: 1  MKSLVYEGDSTSHGGKILTGSDRINVKGRRVARVGDKVSCPI--HGENEIVEGGYIMTDG 58
          M S+ + GD+T+HGG ILTGSD + V GR+ ARVGD VSCP+  HG N I+EG  ++TD 
Sbjct: 1  MTSIAFVGDATTHGGVILTGSDTMIVMGRKAARVGDLVSCPLPGHGINPIIEGSDMLTDN 60

Query: 59 TTPISREGDHARCGAVLIASSGGVLVR 85
             I+  G    CG  LIA S    +R
Sbjct: 61 GKAIALHGHRTACGCTLIALSTDATIR 87


>ref|ZP_02911354.1| PAAR repeat-containing protein [Burkholderia ambifaria MEX-5]
 gb|EDT37513.1| PAAR repeat-containing protein [Burkholderia ambifaria MEX-5]
          Length = 83

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 1  MKSLVYEGDSTSHGGKILTGSDRINVKGRRVARVGDKVSCPIHGE---NEIVEGGYIMTD 57
          M +L+  GD T HGGK++TGS ++   GR VAR GD+V+CP H E   N IVEG   MTD
Sbjct: 1  MMNLIRVGDDTDHGGKVITGSSKMRFDGRFVARKGDEVTCPRHPEVKPNLIVEGDESMTD 60

Query: 58 GTTPISREGDHARCGAVLIAS 78
             PI+R G  A CG  LI+S
Sbjct: 61 DGIPIARHGHRATCGCCLISS 81


>ref|YP_002909652.1| PAAR repeat-containing protein [Burkholderia glumae BGR1]
 gb|ACR32417.1| PAAR repeat-containing protein [Burkholderia glumae BGR1]
          Length = 86

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 50/81 (61%), Gaps = 3/81 (3%)

Query: 1  MKSLVYEGDSTSHGGKILTGSDRINVKGRRVARVGDKVSCPIHGE---NEIVEGGYIMTD 57
          M +LV  GD T HGGK++T S  +   GR VAR GD+VSCP H +   N IVEG   MTD
Sbjct: 1  MMNLVRLGDDTDHGGKVITASTTMRFDGRFVARKGDEVSCPRHPDVKPNVIVEGDASMTD 60

Query: 58 GTTPISREGDHARCGAVLIAS 78
             PI+R G  A CG  LI+S
Sbjct: 61 NGVPIARHGHKATCGCALISS 81