BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2883.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002908736.1| type IV / VI secretion system protein, DotU ... 295 6e-78 ref|ZP_04947392.1| hypothetical protein BDAG_03363 [Burkholderia... 288 4e-76 ref|YP_003607786.1| type IV / VI secretion system protein, DotU ... 261 6e-68 ref|ZP_04942215.1| hypothetical protein BCPG_03748 [Burkholderia... 246 2e-63 gb|EGD01689.1| hypothetical protein B1M_25322 [Burkholderia sp. ... 244 8e-63 >ref|YP_002908736.1| type IV / VI secretion system protein, DotU family [Burkholderia glumae BGR1] gb|ACR31501.1| type IV / VI secretion system protein, DotU family [Burkholderia glumae BGR1] Length = 243 Score = 295 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 140/243 (57%), Positives = 180/243 (74%) Query: 1 MNTMNPSAQDVGHMNSARDGSSQSGQGIRDLLRDTALLVTSLSTGGKAEDSAELRERCKQ 60 MNT+ P DV M+ S SG G+RDLLRDT LLVT+L+ GG+ +D+A LRERC+Q Sbjct: 1 MNTLTPDHNDVTPMDDLPGSSRVSGAGMRDLLRDTGLLVTTLAPGGRVQDAAGLRERCRQ 60 Query: 61 LIEDFSIAMEHRGFSQDIRNEALIAQCGLLDEVAMRHLPTEARSHWEFNPLQVETFNLHE 120 LI +FS A+ RG+ D+R +ALIAQCGLLDE A+R+LP E+R+ W+ PLQVE FNLH+ Sbjct: 61 LITNFSDALARRGYPDDVRQDALIAQCGLLDETALRYLPAESRAAWQLKPLQVEQFNLHD 120 Query: 121 AGERVFENLNVHLEEPYPPIALLECYSAILGMGFLGKYARDGEAKRRALMAYVNAKLEKL 180 AGERV E L + E P + LLECYSAILGMGF+G+YAR+GEAKR AL+ +N +LE L Sbjct: 121 AGERVIERLEARMREASPNLDLLECYSAILGMGFVGRYAREGEAKRTALVTSLNTQLETL 180 Query: 181 QPAVDRPFIVDQSRNRWSNWLYRLSPWTIALLASIVALVIWGVWSAALDAQLAHLLAIKA 240 +P+ RPF+ D++ R S+W Y LSPW IA LA +VAL++W VW+AALD Q+AHLL +K Sbjct: 181 RPSSARPFMTDRAGRRLSDWFYWLSPWAIAGLACVVALIVWMVWAAALDVQIAHLLPVKG 240 Query: 241 AHP 243 P Sbjct: 241 GQP 243 >ref|ZP_04947392.1| hypothetical protein BDAG_03363 [Burkholderia dolosa AUO158] gb|EAY70563.1| hypothetical protein BDAG_03363 [Burkholderia dolosa AUO158] Length = 243 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 143/243 (58%), Positives = 182/243 (74%) Query: 1 MNTMNPSAQDVGHMNSARDGSSQSGQGIRDLLRDTALLVTSLSTGGKAEDSAELRERCKQ 60 MNT+N M S + +SG+GIRDLLRDTALLVT LS GG +D+A R+RC++ Sbjct: 1 MNTLNAGRHATALMGSQSGTARRSGEGIRDLLRDTALLVTMLSAGGHVQDAAGFRDRCRK 60 Query: 61 LIEDFSIAMEHRGFSQDIRNEALIAQCGLLDEVAMRHLPTEARSHWEFNPLQVETFNLHE 120 LIE FS A+E RG+ D+R EALIAQCGL DE A+RHLP E+R+ WE PLQVE FNLH+ Sbjct: 61 LIEHFSNALEQRGYPDDVRQEALIAQCGLFDETALRHLPAESRAGWELKPLQVERFNLHD 120 Query: 121 AGERVFENLNVHLEEPYPPIALLECYSAILGMGFLGKYARDGEAKRRALMAYVNAKLEKL 180 AGERVF+ L+ + E P + LLECYSAILGMGF+G+YAR+GEAKR AL+A +NA+LEKL Sbjct: 121 AGERVFDRLDARMREASPRVELLECYSAILGMGFVGRYAREGEAKRTALIASLNAQLEKL 180 Query: 181 QPAVDRPFIVDQSRNRWSNWLYRLSPWTIALLASIVALVIWGVWSAALDAQLAHLLAIKA 240 + + +RPFI D++ R S+W +RLSPW IA +A +ALV+W +W+AALD QLAHL+ K Sbjct: 181 RSSAERPFIADRAGRRLSDWFFRLSPWAIAGIACAIALVVWLMWTAALDVQLAHLVPAKV 240 Query: 241 AHP 243 P Sbjct: 241 GQP 243 >ref|YP_003607786.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. CCGE1002] gb|ADG18275.1| type IV / VI secretion system protein, DotU family [Burkholderia sp. CCGE1002] Length = 243 Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats. Identities = 130/243 (53%), Positives = 171/243 (70%) Query: 1 MNTMNPSAQDVGHMNSARDGSSQSGQGIRDLLRDTALLVTSLSTGGKAEDSAELRERCKQ 60 MN + ++ + ++S + GIRDLLRDTALLVT+L+ GG + + + R RC Sbjct: 1 MNALPRNSTEAALLDSMAGAPRVTRAGIRDLLRDTALLVTTLTPGGHVDHATDFRNRCGL 60 Query: 61 LIEDFSIAMEHRGFSQDIRNEALIAQCGLLDEVAMRHLPTEARSHWEFNPLQVETFNLHE 120 LI +FS +E RG++ +IR EAL+AQCGLLDEVA+R+LP E+R+ WE PLQVE FNLH+ Sbjct: 61 LIANFSTELERRGYADEIRREALLAQCGLLDEVALRYLPAESRAAWELKPLQVELFNLHD 120 Query: 121 AGERVFENLNVHLEEPYPPIALLECYSAILGMGFLGKYARDGEAKRRALMAYVNAKLEKL 180 AGERVFE L + E P + LLECY+AIL +GF+G++ARDGEA+R AL ++A+L+KL Sbjct: 121 AGERVFERLEARMHEASPHVDLLECYAAILSLGFIGRFARDGEAERAALTTSLHAQLQKL 180 Query: 181 QPAVDRPFIVDQSRNRWSNWLYRLSPWTIALLASIVALVIWGVWSAALDAQLAHLLAIKA 240 +PA FI D+S R S+W YRLSPW IA LA VA ++W VWS ALDAQLA L+ K Sbjct: 181 RPAPASTFIADRSDRRLSDWFYRLSPWAIAGLACGVAAIVWLVWSTALDAQLAQLVQTKV 240 Query: 241 AHP 243 P Sbjct: 241 TRP 243 >ref|ZP_04942215.1| hypothetical protein BCPG_03748 [Burkholderia cenocepacia PC184] gb|EAY65386.1| hypothetical protein BCPG_03748 [Burkholderia cenocepacia PC184] Length = 246 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 132/246 (53%), Positives = 171/246 (69%), Gaps = 3/246 (1%) Query: 1 MNTMNPSAQDVGHMNSARDGSSQSGQGIRDLLRDTALLVTSLSTGGKAEDSAELRERCKQ 60 MN + PS + + A SG GIRDLL +TALLVT+LS GG A D+ LRE C+Q Sbjct: 1 MNALTPSLDEATLLQGATAAGRVSGVGIRDLLNNTALLVTTLSAGGTARDAGALREHCRQ 60 Query: 61 LIEDFSIAMEHRGFSQDIRNEALIAQCGLLDEVAMRHLPTEARSHWEFNPLQVETFNLHE 120 LI+ FS A+ RG+ D+RNEAL+AQCGLLDE A+R+LP ++RS W PLQVE FNLH+ Sbjct: 61 LIDHFSSALIQRGYPDDVRNEALVAQCGLLDEAALRYLPADSRSGWAEKPLQVERFNLHD 120 Query: 121 AGERVFENLNVHLEEPYPPIALLECYSAILGMGFLGKYARD---GEAKRRALMAYVNAKL 177 AGERVF+ L + E P I LLECYSAILG GF+G+YARD GEA+R AL+A ++A+L Sbjct: 121 AGERVFDRLEARMRETPPQIDLLECYSAILGCGFVGRYARDAREGEAERTALIASLDARL 180 Query: 178 EKLQPAVDRPFIVDQSRNRWSNWLYRLSPWTIALLASIVALVIWGVWSAALDAQLAHLLA 237 KL+P+ +RPF D++ R S+ YRLSPW IA L + A ++W W+A LD Q+A L++ Sbjct: 181 NKLRPSSERPFHADRAGRRLSDRFYRLSPWAIAALGCVAAAIVWAAWAAGLDMQVADLVS 240 Query: 238 IKAAHP 243 K P Sbjct: 241 AKVLQP 246 >gb|EGD01689.1| hypothetical protein B1M_25322 [Burkholderia sp. TJI49] Length = 216 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 124/216 (57%), Positives = 161/216 (74%) Query: 28 IRDLLRDTALLVTSLSTGGKAEDSAELRERCKQLIEDFSIAMEHRGFSQDIRNEALIAQC 87 +RDLLRDTALLVT+L TGG +D+ ELR RC+QLIE FS A++ RG+ D+R EALIAQC Sbjct: 1 MRDLLRDTALLVTTLGTGGTTKDADELRNRCRQLIEHFSEALKRRGYPDDVRREALIAQC 60 Query: 88 GLLDEVAMRHLPTEARSHWEFNPLQVETFNLHEAGERVFENLNVHLEEPYPPIALLECYS 147 GLLDE +R LP E R+ WE PLQVE FNLH+AGE VF+ L + E P + LLECY+ Sbjct: 61 GLLDETVLRALPAEMRAGWELKPLQVEQFNLHDAGESVFDRLEARMRETPPRVDLLECYA 120 Query: 148 AILGMGFLGKYARDGEAKRRALMAYVNAKLEKLQPAVDRPFIVDQSRNRWSNWLYRLSPW 207 AILGMGF+G+YAR+ E KR AL+A +N +LE L+P+ RPF++D++ R S+W YRLSPW Sbjct: 121 AILGMGFVGRYARESEVKRSALIARLNTQLESLRPSSARPFVIDRAGRRLSDWFYRLSPW 180 Query: 208 TIALLASIVALVIWGVWSAALDAQLAHLLAIKAAHP 243 IA LA + A+++W +W+ ALD Q+A+L K P Sbjct: 181 AIAGLACVAAMIVWMLWAGALDMQIAYLAPAKGIRP 216