BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2882.p (620 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_04947393.1| Outer membrane protein [Burkholderia dolosa A... 605 e-170 ref|YP_002908737.1| OmpA/MotB domain-containing protein [Burkhol... 580 e-163 gb|EGD01688.1| Outer membrane protein [Burkholderia sp. TJI49] 572 e-161 ref|ZP_02380533.1| OmpA/MotB [Burkholderia ubonensis Bu] 546 e-153 ref|YP_001810329.1| OmpA/MotB domain-containing protein [Burkhol... 543 e-152 >ref|ZP_04947393.1| Outer membrane protein [Burkholderia dolosa AUO158] gb|EAY70564.1| Outer membrane protein [Burkholderia dolosa AUO158] Length = 616 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 360/603 (59%), Positives = 429/603 (71%), Gaps = 15/603 (2%) Query: 31 CAGCTARTSARDKGCASVKSKSFSLATELEGTTVHRHETLGYPSRLMISASALLLLMVLW 90 C C+AR KG +VKS L+ T H HE LGYP R++ +A L L V+W Sbjct: 7 CTRCSARAPGAGKGRPAVKSDLPVLSAAPVRTPDHGHEGLGYPFRVLTMFAAALALAVIW 66 Query: 91 AVLPFSSSVKWMLSLLLSLVALLALFWCSRSIAGAREQSLHVQNTLGVAAGNIPIKLRTH 150 +LP S W ++ ++ +V L L +R + ARE S V LG A NIP++LRT Sbjct: 67 LMLPVGSGFAWTVTAVIGIVVLALLGGYTRRLVRAREHSALVLTALGAATSNIPVRLRTR 126 Query: 151 MPLVLVIGDGLPALFDRAGETRNAYVGDSCIWLRVDQPQDLPQLAVAVKQWRDGRVPDGI 210 MPLVLV GDGLPALF+R G+ R A+VGD IWLRVD+PQ+LPQLAVAV+QWRDGR PDG+ Sbjct: 127 MPLVLVTGDGLPALFNRDGQERFAHVGDGAIWLRVDRPQELPQLAVAVRQWRDGRAPDGV 186 Query: 211 LLSVAPALYSDADALSQRLQLARQAAADTARLLGKRIPGYVAVYQRLIPGAAKNPQPT-- 268 +LSVAPAL++ AD L+Q L+LARQA AD R LG R+PGYVAVYQRLI G + + Q Sbjct: 187 VLSVAPALHTGADVLTQALRLARQAVADATRTLGTRLPGYVAVYQRLISGDSLHAQTAPQ 246 Query: 269 -------------WYGISSGRPLEEDIRFSPILRAAENQFGRTTDSRRVATHAAALTSVI 315 WYG+SS L + RF P+LRAAE++ R VA AAAL S++ Sbjct: 247 SDGLDTNGAAVAHWYGVSSATRLVDADRFEPVLRAAEDEVLHVAGERAVAARAAALASIV 306 Query: 316 DWTRRTVLSVLADAKAPTIPWPLFGAGWIDYGPASRSENPWERDVQTQTCVTRAEAIESS 375 WT+R V+ L D + P PW LFGA WID GPAS NPW+RDV+ QT V RA+A S+ Sbjct: 307 GWTQRVVIGALTDPQQPATPWTLFGAAWIDCGPASGPGNPWQRDVERQTRVMRADAAASA 366 Query: 376 TPWPLPQPLIEAMPRRYWISPRVLFFLHTIMLLAGAAAIAFWGAAKNNEALLNRIGNDLD 435 PWP PQPLIEAMPRRYW+SPR+ F H + LA AAA+AFW + KNNEALL R+G DL Sbjct: 367 LPWPFPQPLIEAMPRRYWMSPRMTAFAHALAFLACAAAMAFWASGKNNEALLARVGADLG 426 Query: 436 HYWTTPTDHQAAKRDALQRLVADRDSLDRYARLGVPLRLAFGMYRGSQLIPQLNEAIAAY 495 Y P H AA+RDALQ LVADRD LDRYAR GVPLRL+FGMYRG+ L+P LN+AIA+Y Sbjct: 427 RYSMIPAAHDAARRDALQALVADRDQLDRYARTGVPLRLSFGMYRGAALMPALNDAIASY 486 Query: 496 APPPPPPAVVTLDSLSLFDSGKAQLKIGSNRVMVSALDMIRKNPHKRILVAGYTDNTGIP 555 PPP PPAV+TLDS+SLFDSGKAQLK GSNR MV A++MI +P KRI+VAGYTDN G P Sbjct: 487 VPPPAPPAVITLDSMSLFDSGKAQLKPGSNRAMVRAIEMINAHPGKRIVVAGYTDNAGNP 546 Query: 556 DNNLKLSTERAQAVRDWLVDASGIPVTQFAIQGYGITHPIASNDTSEGRARNRRVEITLV 615 D+NL+LS RAQAVRDWL+DASGIP TQFAIQGYG T PIASND +GRARNRRVEITLV Sbjct: 547 DSNLRLSRARAQAVRDWLIDASGIPATQFAIQGYGDTRPIASNDAPDGRARNRRVEITLV 606 Query: 616 PDS 618 PD+ Sbjct: 607 PDT 609 >ref|YP_002908737.1| OmpA/MotB domain-containing protein [Burkholderia glumae BGR1] gb|ACR31502.1| OmpA/MotB domain-containing protein [Burkholderia glumae BGR1] Length = 602 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 345/578 (59%), Positives = 415/578 (71%), Gaps = 24/578 (4%) Query: 67 HETLGYPSRLMISASALLLLMVLWAVLPFSSSVKWMLSLLLSLVALLALFWCSRSIAGAR 126 HE LGYP R+MI +A L L V+W VLP W L+ ++ +V L W +R ++ AR Sbjct: 20 HEGLGYPFRMMIVFAAALALAVVWLVLPLGRGAIWALTAVIGIVVLALTGWFTRRLSRAR 79 Query: 127 EQSLHVQNTLGVAAGNIPIKLRTHMPLVLVIGDGLPALFDRAGETRNAYVGDSCIWLRVD 186 EQS HV LG A +IP++LR MPLVL+ GDGLPALF+ R A+VGD IWLRVD Sbjct: 80 EQSAHVLAALGAATADIPVRLRIRMPLVLITGDGLPALFNLTEAERFAHVGDGAIWLRVD 139 Query: 187 QPQDLPQLAVAVKQWRDGRVPDGILLSVAPALYSDADALSQRLQLARQAAADTARLLGKR 246 +PQDLP+LAVAV+QWRDGRVPDG++L VAPAL++ D L+Q+L+L RQA AD AR LG R Sbjct: 140 RPQDLPRLAVAVRQWRDGRVPDGVVLCVAPALHAGPDVLTQKLRLVRQAVADAARTLGAR 199 Query: 247 IPGYVAVYQRLIPGAAKN----------------PQPTWYGISSGRPLEEDIRFSPILRA 290 +PGYVAVYQRL G + WYG+SS L + RF P++RA Sbjct: 200 LPGYVAVYQRLTAGEGSDVPHAIPGLAAAASANRAASQWYGVSSATRLVDAERFEPVIRA 259 Query: 291 AENQFGRTTDSRRVATHAAALTSVIDWTRRTVLSVLADAKAPTIPWPLFGAGWIDYGPAS 350 AE + R AT AAAL S++ WT+R V+ L D + P PW LFGAGWID GPA+ Sbjct: 260 AEEAVQHASGDRLAATRAAALASIVGWTQRVVIGALTDRQQPAAPWALFGAGWIDCGPAN 319 Query: 351 R--------SENPWERDVQTQTCVTRAEAIESSTPWPLPQPLIEAMPRRYWISPRVLFFL 402 + NPW+RDV+ QT V A+A S+ PWP PQPL+ AMPRR W+SPR+ F Sbjct: 320 AVGMSVDRGTGNPWQRDVEMQTRVEPADAEASALPWPFPQPLLAAMPRRLWVSPRMTAFA 379 Query: 403 HTIMLLAGAAAIAFWGAAKNNEALLNRIGNDLDHYWTTPTDHQAAKRDALQRLVADRDSL 462 H + L A AAA+AFW +AKNNEALLNRIG DL Y T P H AAKRDAL+ L+ADRD L Sbjct: 380 HALALAACAAAVAFWASAKNNEALLNRIGADLGRYSTVPPAHDAAKRDALEALIADRDQL 439 Query: 463 DRYARLGVPLRLAFGMYRGSQLIPQLNEAIAAYAPPPPPPAVVTLDSLSLFDSGKAQLKI 522 DRYAR GVPLRL+FGMYRG++L+P LN+AIA+Y PPPPPPAVVTLDS+SLFDSG++QLK Sbjct: 440 DRYARTGVPLRLSFGMYRGARLMPALNDAIASYVPPPPPPAVVTLDSMSLFDSGRSQLKP 499 Query: 523 GSNRVMVSALDMIRKNPHKRILVAGYTDNTGIPDNNLKLSTERAQAVRDWLVDASGIPVT 582 GS R MV AL+MI+ +P KRILVAGYTDN+G P+ NLKLST RA+AVRDWL++ASGIP T Sbjct: 500 GSTRAMVGALEMIKAHPDKRILVAGYTDNSGNPNRNLKLSTARARAVRDWLIEASGIPTT 559 Query: 583 QFAIQGYGITHPIASNDTSEGRARNRRVEITLVPDSDK 620 QFAIQGYG T PIASNDT EGRARNRRVEITLVP+ K Sbjct: 560 QFAIQGYGDTRPIASNDTPEGRARNRRVEITLVPEIPK 597 >gb|EGD01688.1| Outer membrane protein [Burkholderia sp. TJI49] Length = 552 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 335/552 (60%), Positives = 399/552 (72%), Gaps = 8/552 (1%) Query: 77 MISASALLLLMVLWAVLPFSSSVKWMLSLLLSLVALLALFWCSRSIAGAREQSLHVQNTL 136 M+ +A L L ++W V P W L+ L+ V L ++W +R + AREQS HV L Sbjct: 1 MVLLAAALALALIWLVAPVGIGTAWTLTALVGTVVLALVWWRTRLLDRAREQSAHVLTAL 60 Query: 137 GVAAGNIPIKLRTHMPLVLVIGDGLPALFDRAGETRNAYVGDSCIWLRVDQPQDLPQLAV 196 G A +IP+KLRT MPLVLV GD L ALFDR GE R+ ++GD IWLRVD+ QDLP+LAV Sbjct: 61 GEATTDIPVKLRTRMPLVLVTGDALSALFDREGEVRHVHLGDGGIWLRVDRMQDLPRLAV 120 Query: 197 AVKQWRDGRVPDGILLSVAPALYSDADALSQRLQLARQAAADTARLLGKRIPGYVAVYQR 256 AV+QWRDGR PDG++L+V P ++ A+ L+Q+L++ARQAAAD +R+LG R+PGYVAVYQR Sbjct: 121 AVRQWRDGRAPDGVVLAVVPGQHAGANGLTQQLRIARQAAADASRMLGTRLPGYVAVYQR 180 Query: 257 LIPGAAKNPQPTWYGISSGRPLEEDIRFSPILRAAENQFGRTTDSRRVATHAAALTSVID 316 L G ++ P WYG+SS PL + RF P++ AAEN+ A AAAL S++ Sbjct: 181 LTTGPSEYAVPQWYGVSSSFPLLDAERFGPVILAAENEVQHGAGDSTAAVRAAALASIVG 240 Query: 317 WTRRTVLSVLADAKAPTIPWPLFGAGWIDYGPASRSE--------NPWERDVQTQTCVTR 368 WT+R V+ L D + P PW LFGAGWID GPAS NPW RDV+ QT V R Sbjct: 241 WTQRVVIGALTDRQQPAGPWALFGAGWIDCGPASPMATSDDNGQVNPWIRDVEMQTRVVR 300 Query: 369 AEAIESSTPWPLPQPLIEAMPRRYWISPRVLFFLHTIMLLAGAAAIAFWGAAKNNEALLN 428 A+A S PWPLP+PLIE+MPRR+W+SPR+ H I +A AAAIAFW A KNN+ LL Sbjct: 301 AQASASPLPWPLPEPLIESMPRRHWMSPRMAACAHAIAFVACAAAIAFWSAGKNNQTLLT 360 Query: 429 RIGNDLDHYWTTPTDHQAAKRDALQRLVADRDSLDRYARLGVPLRLAFGMYRGSQLIPQL 488 RIG DL HY P H AKRDALQ LV DRD LDRYAR GVPLRL+FGMYRG+QL P L Sbjct: 361 RIGADLAHYSMIPAAHDVAKRDALQVLVDDRDQLDRYARTGVPLRLSFGMYRGTQLTPTL 420 Query: 489 NEAIAAYAPPPPPPAVVTLDSLSLFDSGKAQLKIGSNRVMVSALDMIRKNPHKRILVAGY 548 N+AIA+Y P PPPAVVTLDS+SLFDSGKAQLK S R MV AL+MI+ +P KRILVAGY Sbjct: 421 NDAIASYVAPAPPPAVVTLDSMSLFDSGKAQLKPDSTRAMVGALEMIKTHPDKRILVAGY 480 Query: 549 TDNTGIPDNNLKLSTERAQAVRDWLVDASGIPVTQFAIQGYGITHPIASNDTSEGRARNR 608 TDN G PD+NLKLS RAQAVRDWL++ASGIP TQFAIQGYG T PIA NDT EGRARNR Sbjct: 481 TDNVGHPDSNLKLSVARAQAVRDWLIEASGIPATQFAIQGYGDTRPIADNDTPEGRARNR 540 Query: 609 RVEITLVPDSDK 620 RVEITLVPD+ K Sbjct: 541 RVEITLVPDTPK 552 >ref|ZP_02380533.1| OmpA/MotB [Burkholderia ubonensis Bu] Length = 592 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 311/556 (55%), Positives = 385/556 (69%), Gaps = 7/556 (1%) Query: 70 LGYPSRLMISASALLLLMVLWAVLPFSSSVKWMLSLLLSLVALLALFWCSRSIAGAREQS 129 LGYP R +++ +A+L L V+W VL W L+ ++ +LLA + R +A REQ Sbjct: 26 LGYPLRTVVTLTAMLALAVIWLVLSIDRGAAWGLTAVIVAASLLAGWLHMRRLARLREQH 85 Query: 130 LHVQNTLGVAAGNIPIKLRTHMPLVLVIGDGLPALFDRAGE-TRNAYVGDSCIWLRVDQP 188 HV LG A ++P+ LRT MP+ LV+GDGL ALFDR TR +VG+ IWLRVDQP Sbjct: 86 AHVLTQLGAATVDLPVGLRTRMPVALVVGDGLAALFDREDAITRYVHVGNGAIWLRVDQP 145 Query: 189 QDLPQLAVAVKQWRDGRVPDGILLSVAPALYSDADALSQRLQLARQAAADTARLLGKRIP 248 QDL +LAVA++QWRDG PD ++LSVAPA+++++D L+QRL++ RQAAAD ++ LG +P Sbjct: 146 QDLSRLAVAIRQWRDGHAPDCVVLSVAPAMHANSDVLAQRLRVIRQAAADASKALGTALP 205 Query: 249 GYVAVYQRLIPGAAKNPQPT------WYGISSGRPLEEDIRFSPILRAAENQFGRTTDSR 302 GYVA+YQRL A +P + WYG S+ P+ + RF + AAE++ +R Sbjct: 206 GYVAIYQRLTDDPATDPTQSGGTTAQWYGASAASPIVDAHRFDAAIEAAESEVVHAGGNR 265 Query: 303 RVATHAAALTSVIDWTRRTVLSVLADAKAPTIPWPLFGAGWIDYGPASRSENPWERDVQT 362 A AA L +++ WT+R V VLAD + P PW LFGAGWID GP + PWERDV+T Sbjct: 266 ATAARAAGLAAIVAWTQRNVFDVLADRRQPAPPWRLFGAGWIDCGPETGPGKPWERDVRT 325 Query: 363 QTCVTRAEAIESSTPWPLPQPLIEAMPRRYWISPRVLFFLHTIMLLAGAAAIAFWGAAKN 422 + V S+TPWPLPQPLIEA P+R W SPR+ H ++A AA +A WGAAKN Sbjct: 326 RIAVAPRALPGSTTPWPLPQPLIEAAPQRAWRSPRIAAVGHAFAIVACAATVAIWGAAKN 385 Query: 423 NEALLNRIGNDLDHYWTTPTDHQAAKRDALQRLVADRDSLDRYARLGVPLRLAFGMYRGS 482 NEAL RIG L Y H AAKRDAL+ LVADRD LDRYAR GVPLRL+FGMY G Sbjct: 386 NEALATRIGEHLARYNAISATHDAAKRDALRALVADRDQLDRYARTGVPLRLSFGMYHGR 445 Query: 483 QLIPQLNEAIAAYAPPPPPPAVVTLDSLSLFDSGKAQLKIGSNRVMVSALDMIRKNPHKR 542 L+ LN+AIA+Y PP PPP+VVTLDS+SLFDSGKA LK S R MV AL++I+ +P KR Sbjct: 446 NLLSPLNDAIASYEPPSPPPSVVTLDSMSLFDSGKAALKPDSTRAMVGALELIKAHPGKR 505 Query: 543 ILVAGYTDNTGIPDNNLKLSTERAQAVRDWLVDASGIPVTQFAIQGYGITHPIASNDTSE 602 ILVAG+TD G PD NLKLS +RA AVRDWLVDASGI TQFAIQGYG T P+A N T E Sbjct: 506 ILVAGHTDAVGKPDRNLKLSVDRAAAVRDWLVDASGIAPTQFAIQGYGDTRPVADNATPE 565 Query: 603 GRARNRRVEITLVPDS 618 GRARNRRVEITLVPD+ Sbjct: 566 GRARNRRVEITLVPDA 581 >ref|YP_001810329.1| OmpA/MotB domain-containing protein [Burkholderia ambifaria MC40-6] gb|ACB66113.1| OmpA/MotB domain protein [Burkholderia ambifaria MC40-6] Length = 587 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 310/556 (55%), Positives = 385/556 (69%), Gaps = 7/556 (1%) Query: 70 LGYPSRLMISASALLLLMVLWAVLPFSSSVKWMLSLLLSLVALLALFWCSRSIAGAREQS 129 LGYP R +++ SA L L V+ V+P V W L+ ++ L ++ SR + AREQ+ Sbjct: 21 LGYPLRTVVTLSAALALAVVGWVVPVERGVMWGWVALVVALSALIVWLHSRGLTRAREQN 80 Query: 130 LHVQNTLGVAAGNIPIKLRTHMPLVLVIGDGLPALFDR-AGETRNAYVGDSCIWLRVDQP 188 + V LG A N+P+ +RT MPL LV GDGL ALFDR +R +VGD IWLR D+P Sbjct: 81 VQVIAQLGAATANLPVTMRTRMPLALVTGDGLSALFDRDTAMSRFVHVGDGAIWLRADRP 140 Query: 189 QDLPQLAVAVKQWRDGRVPDGILLSVAPALYSDADALSQRLQLARQAAADTARLLGKRIP 248 QDLP+LAVAV+QWRDG PD ++L+VAP L+++ D LSQ L++ RQA AD +R+LG +P Sbjct: 141 QDLPRLAVAVRQWRDGHAPDCVVLAVAPGLHANDDTLSQSLRVIRQAVADASRMLGTSLP 200 Query: 249 GYVAVYQRLIPGAAKNPQPT------WYGISSGRPLEEDIRFSPILRAAENQFGRTTDSR 302 GYVA+YQRL A P WYG+S+G P+ RF + AAE+ S Sbjct: 201 GYVALYQRLSNANAAATLPAVESAARWYGMSTGSPIVNTHRFDTAIEAAESDALHADGSP 260 Query: 303 RVATHAAALTSVIDWTRRTVLSVLADAKAPTIPWPLFGAGWIDYGPASRSENPWERDVQT 362 VA AA + S+I WTRR V L D + P PWPLFG GWID+GPAS PWER+V++ Sbjct: 261 AVAARAAGVASMIGWTRRVVFDTLTDRRQPASPWPLFGVGWIDHGPASGPGKPWEREVRS 320 Query: 363 QTCVTRAEAIESSTPWPLPQPLIEAMPRRYWISPRVLFFLHTIMLLAGAAAIAFWGAAKN 422 T + A S TPWPLPQPLI+AMPRR W SPR+ H I ++A AA A GAAKN Sbjct: 321 LTGIAPATLPASPTPWPLPQPLIDAMPRRTWRSPRITAAAHVIAIVACAAIAAICGAAKN 380 Query: 423 NEALLNRIGNDLDHYWTTPTDHQAAKRDALQRLVADRDSLDRYARLGVPLRLAFGMYRGS 482 NEAL+ RIG L HY P H AKRDAL+ LV+DRD LDRYAR+GVPLRL+FG YRG+ Sbjct: 381 NEALMTRIGEHLQHYNRIPATHDTAKRDALRVLVSDRDQLDRYARVGVPLRLSFGTYRGA 440 Query: 483 QLIPQLNEAIAAYAPPPPPPAVVTLDSLSLFDSGKAQLKIGSNRVMVSALDMIRKNPHKR 542 L+P +N+AIA+Y P PPPPAVVTLDS+SLFDSGKA L+ G+ R MV AL++I+ + KR Sbjct: 441 PLLPVINDAIASYEPSPPPPAVVTLDSMSLFDSGKATLRTGTTRAMVDALELIKAHSGKR 500 Query: 543 ILVAGYTDNTGIPDNNLKLSTERAQAVRDWLVDASGIPVTQFAIQGYGITHPIASNDTSE 602 +LVAGY D+ G PD NLKLS +RA AVRDWLV+ASGIP T+FAIQGYG T P+A N T E Sbjct: 501 VLVAGYADDQGRPDRNLKLSIDRASAVRDWLVEASGIPPTRFAIQGYGDTRPVADNATPE 560 Query: 603 GRARNRRVEITLVPDS 618 GRA+NRRVEITLVPD+ Sbjct: 561 GRAKNRRVEITLVPDT 576