BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2877.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774911.1| nitrate/sulfonate/bicarbonate ABC transporte... 546 e-153 ref|YP_004405277.1| nitrate/sulfonate/bicarbonate ABC transporte... 217 2e-54 ref|YP_004008978.1| ABC transporter substrate-binding protein [R... 165 9e-39 ref|ZP_07300010.1| PE-PGRS family protein [Streptomyces hygrosco... 162 8e-38 ref|ZP_08152805.1| hypothetical protein HMPREF0724_10586 [Rhodoc... 135 8e-30 >ref|YP_003774911.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63003.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 280/319 (87%), Positives = 302/319 (94%) Query: 36 VTHSTVSPQRRKLLLGAASMLAAGAAPALPALAQGAPVIIGVGADPVFTAFFVAANEKLF 95 +THST SP RRKLLLGAASMLAAGA PA+PALAQGAPV IGVGADPVFTAFFVAANEKLF Sbjct: 1 MTHSTPSPHRRKLLLGAASMLAAGALPAVPALAQGAPVTIGVGADPVFTAFFVAANEKLF 60 Query: 96 AKHGAPNVTVQSYTDGGEALNALVANQVQLGCAGEPTHIVRLSRAELRPLAVTYQSKTYV 155 AK+GAPNV+VQSYTDGGEALNALVANQV LGCAGEPTHIVRL+RAELRPLAVTYQS+TY+ Sbjct: 61 AKYGAPNVSVQSYTDGGEALNALVANQVNLGCAGEPTHIVRLARAELRPLAVTYQSRTYL 120 Query: 156 KLVARKAITSADKIKKFGIVAGSVSEYVTGLTLKTLNIDAAKVEMVRSGPPELPALLARG 215 KLVARK I +ADKI+KFGIV GSVSEYVTGLT++ L +DA+K+EMVRSGPPELPALLARG Sbjct: 121 KLVARKDIATADKIRKFGIVVGSVSEYVTGLTIRQLKLDASKIEMVRSGPPELPALLARG 180 Query: 216 DIDAYFVWEPWPTLGVQQGGHILMTAGDVGYTSTLWLSANANWLAANKEVAGNILKALAE 275 DIDAYFVWEPWPTLGVQQGGHILMT GDVGYTSTLWLSA A WLAANKEVAG ILKALAE Sbjct: 181 DIDAYFVWEPWPTLGVQQGGHILMTCGDVGYTSTLWLSATAPWLAANKEVAGRILKALAE 240 Query: 276 ASEITRKDPARAAKSVQAVTRIPVPQTLNSLKDMEPIVRDFTDTDLKTANAIGEFLLSKQ 335 A+EITRKDP RAA+SVQA+TRIP+PQTLNSLKDMEP+VRDF+DTDL TANAIGEFLLS+Q Sbjct: 241 AAEITRKDPPRAAQSVQAITRIPIPQTLNSLKDMEPVVRDFSDTDLATANAIGEFLLSRQ 300 Query: 336 AIKAPVDMSKILQRGFYKG 354 AIKAPVDM K+LQRGFYKG Sbjct: 301 AIKAPVDMGKVLQRGFYKG 319 >ref|YP_004405277.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Verrucosispora maris AB-18-032] gb|AEB44677.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Verrucosispora maris AB-18-032] Length = 320 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 122/317 (38%), Positives = 179/317 (56%), Gaps = 12/317 (3%) Query: 46 RKLLLGAASML--AAGAAPALPALAQG---------APVIIGVGADPVFTAFFVAANEKL 94 R L + AA++L AGAA A A G A V GVG DP ++ ++A +KL Sbjct: 4 RTLRVAAAALLITVAGAACAENQTADGSGGSAAEPSANVTFGVGVDPAYSPIYLADQDKL 63 Query: 95 FAKHGAPNVTVQSYTDGGEALNALVANQVQLGCAGEPTHIVRLSRAELRPLAVTYQSKTY 154 FA G NVTV + +G L+A++A Q Q + E + + R +R +++ LAV QS ++ Sbjct: 64 FAASGV-NVTVTQFQEGTGGLDAILAKQGQFTASTESSLLNRATRGDIKGLAVFSQSPSF 122 Query: 155 VKLVARKAITSADKIKKFGIVAGSVSEYVTGLTLKTLNIDAAKVEMVRSGPPELPALLAR 214 +KLVAR I+ IKK+G+V G+V+EY T L NI VE V + P E+PALL R Sbjct: 123 IKLVARDGISDVTGIKKYGVVPGTVNEYATNKVLAAKNISRDSVEFVNASPAEMPALLQR 182 Query: 215 GDIDAYFVWEPWPTLGVQQGGHILMTAGDVGYTSTLWLSANANWLAANKEVAGNILKALA 274 GD+D Y +WEPWP+ GV GG IL+T+GD+GY L + + W ANK+ A ++ + Sbjct: 183 GDVDGYIMWEPWPSRGVANGGKILLTSGDIGYVYNLVIGVDGAWYEANKDAAKKVVDTIG 242 Query: 275 EASEITRKDPARAAKSVQAVTRIPVPQTLNSLKDMEPIVRDFTDTDLKTANAIGEFLLSK 334 +A + DPA+A + ++P + N LK +E VRDFTD DLK I +F Sbjct: 243 KACDQLTADPAKAGSVTEKAIKVPAAEAENLLKGVECKVRDFTDEDLKRYAEIAQFQQDS 302 Query: 335 QAIKAPVDMSKILQRGF 351 + ++ D + ++ RG Sbjct: 303 KIVEKAADPATVMIRGL 319 >ref|YP_004008978.1| ABC transporter substrate-binding protein [Rhodococcus equi 103S] ref|ZP_08152794.1| hypothetical protein HMPREF0724_10575 [Rhodococcus equi ATCC 33707] emb|CBH50300.1| putative ABC transporter substrate binding lipoprotein [Rhodococcus equi 103S] gb|EGD26021.1| hypothetical protein HMPREF0724_10575 [Rhodococcus equi ATCC 33707] Length = 326 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 170/316 (53%), Gaps = 11/316 (3%) Query: 47 KLLLGAASML---AAGAA--PALPALAQ--GAPVIIGVGADPVFTAFFVAANEKLFAKHG 99 K+ L +A+++ AAGA PA + A G P+ I VG D + FFVA E +FA G Sbjct: 9 KVTLASAALVLTVAAGACSRPATQSTADSGGGPLRIAVGIDASYAPFFVADQEGMFADEG 68 Query: 100 APNVTVQSYTDGGEALNALVANQVQLGCAGEPTHIVRLSR-AELRPLAVTYQSKTYVKLV 158 +V + + GGEA++AL QVQ+ + + T I +L + LR + S Y+K+V Sbjct: 69 L-DVQLVQFGRGGEAVDALATGQVQVAGSSDTTTIAQLRQNPSLRAMYSYEVSGDYIKVV 127 Query: 159 ARKAITSADKIKKFGIVAGSVSEYVTGLTLKTLNIDAAKVEMVRSGPPELPALLARGDID 218 R + +A I+K GIV G +S+ T L+ I VEMV + P ++PALL+RGDID Sbjct: 128 LRNGVDTAAGIEKMGIVPG-LSQISTDKYLEANGIAPGAVEMVSATPTDMPALLSRGDID 186 Query: 219 AYFVWEPWPTLGVQQG-GHILMTAGDVGYTSTLWLSANANWLAANKEVAGNILKALAEAS 277 Y +WEPWP + QG GH++ GD + W A WL N++ A I K LA+AS Sbjct: 187 GYVLWEPWPATALSQGSGHVVAVTGDYDWFYHHWAITTAPWLEQNEDTARKIAKVLAQAS 246 Query: 278 EITRKDPARAAKSVQAVTRIPVPQTLNSLKDMEPIVRDFTDTDLKTANAIGEFLLSKQAI 337 E DP AA + + + QT+ ++ +++ V + TD D+++A +I +F + Sbjct: 247 ERVESDPQTAAAATRKAVNVAEDQTVTAVSEIDFGVENLTDKDVESAQSIVDFYKKIGVL 306 Query: 338 KAPVDMSKILQRGFYK 353 D++ + +Y+ Sbjct: 307 SEQPDLTSAMLLDWYQ 322 >ref|ZP_07300010.1| PE-PGRS family protein [Streptomyces hygroscopicus ATCC 53653] gb|EFL28379.1| PE-PGRS family protein [Streptomyces himastatinicus ATCC 53653] Length = 325 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 155/308 (50%), Gaps = 6/308 (1%) Query: 48 LLLGAASMLAAGAAPALPALAQGAPVI-IGVGADPVFTAFFVAANEKLFAKHGAPNVTVQ 106 LLL A M AG + +G P + + +G D + F++A +FAK G NV + Sbjct: 18 LLLVPACM--AGTMDSDAGEVKGGPTVRVALGVDASYAPFYLAKERGMFAKAGV-NVELM 74 Query: 107 SYTDGGEALNALVANQVQLGCAGEPTHIVRLS-RAELRPLAVTYQSKTYVKLVARKAITS 165 G A A+ A QL + T + ++ LR L V S Y+K+V R ITS Sbjct: 75 RTEGGPTAGQAVTAGTAQLAANADSTALSLMAGDPGLRALGVFQSSGRYLKVVMRDGITS 134 Query: 166 ADKIKKFGIVAGSVSEYVTGLTLKTLNIDAAKVEMVRSGPPELPALLARGDIDAYFVWEP 225 +IK + G + Y T L+ ID A V + +S PPE+P LL RG IDAY ++EP Sbjct: 135 PRQIKTMASIQG-LGLYATHAYLRRHGIDPASVTIHQSSPPEMPGLLQRGSIDAYVLYEP 193 Query: 226 WPTLGVQQGGHILMTAGDVGYTSTLWLSANANWLAANKEVAGNILKALAEASEITRKDPA 285 W G + GGHI +GD G T WL A WL N+EVA + K LAEA + +DP Sbjct: 194 WAAKGAESGGHIAGHSGDFGVTYVQWLLAEDRWLKNNQEVAAKVFKVLAEADRMVTRDPT 253 Query: 286 RAAKSVQAVTRIPVPQTLNSLKDMEPIVRDFTDTDLKTANAIGEFLLSKQAIKAPVDMSK 345 AA + ++P QT L ++ VR T D++ + I FL ++ IK D+ + Sbjct: 254 AAAAATNQQVKLPTAQTRKVLPEITFRVRGLTGADVEQSARITGFLTGQKLIKKSPDLDR 313 Query: 346 ILQRGFYK 353 L +G+Y+ Sbjct: 314 ALMKGWYE 321 >ref|ZP_08152805.1| hypothetical protein HMPREF0724_10586 [Rhodococcus equi ATCC 33707] gb|EGD26032.1| hypothetical protein HMPREF0724_10586 [Rhodococcus equi ATCC 33707] Length = 326 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 5/287 (1%) Query: 68 AQGAP---VIIGVGADPVFTAFFVAANEKLFAKHGAPNVTVQSYTDGGEALNALVANQVQ 124 A AP V I VG DP + FFVA E LF G +Q+ A N + Sbjct: 34 AASAPDGLVRISVGVDPSYAPFFVAEKEGLFEAAGLNVQIIQTEGGAASAQNVVAGTSEM 93 Query: 125 LGCAGEPTHIVRLSRAELRPLAVTYQSKTYVKLVARKAITSADKIKKFGIVAGSVSEYVT 184 G A V + LR L V +S Y ++V R +T IK G+ G + Y T Sbjct: 94 SGNADSTALTVMAANPTLRALGVYEESDRYFQVVLRPGVTP-QSIKTMGVFPG-IGLYFT 151 Query: 185 GLTLKTLNIDAAKVEMVRSGPPELPALLARGDIDAYFVWEPWPTLGVQQGGHILMTAGDV 244 L+++ +D A V++V + PPE PALLARGDID + ++PW V GG ++ T+GD Sbjct: 152 DAYLRSVGLDPAAVKLVSTSPPEQPALLARGDIDGFISFDPWVAQAVATGGRVVATSGDF 211 Query: 245 GYTSTLWLSANANWLAANKEVAGNILKALAEASEITRKDPARAAKSVQAVTRIPVPQTLN 304 G + WL + +WLAAN+E+A + +A+A+ I DP RAA ++ + ++ + Sbjct: 212 GARYSQWLLTSESWLAANEELAARVFAVVADAAAIVNSDPDRAAAAISSAIQMDPAEAKR 271 Query: 305 SLKDMEPIVRDFTDTDLKTANAIGEFLLSKQAIKAPVDMSKILQRGF 351 ++ ++ + RDFT D A+ + F + I VD ++ G+ Sbjct: 272 TVTQIDFVGRDFTPDDTARADDLVTFFRDQGKITGSVDTDTVMLHGW 318