BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2875.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporte... 417 e-114 ref|YP_004405275.1| nitrate/sulfonate/bicarbonate ABC transporte... 266 2e-69 ref|YP_004008976.1| ABC transporter transmembrane protein [Rhodo... 248 7e-64 ref|ZP_08512065.1| ABC transporter, permease protein [Paenibacil... 225 6e-57 ref|YP_003243648.1| binding-protein-dependent transport systems ... 215 5e-54 >ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63001.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 246/256 (96%), Positives = 254/256 (99%) Query: 17 MPSSLGRRMKAARPFLISVVAIVGGLVLWQLVSMTTSPLFLPSVSMTWAAALELISDGTL 76 MPS+LGRR+KAARPFLISV+AIVGGLVLWQLVS+TTSPLFLPSVSMTWAAALELISDGTL Sbjct: 1 MPSNLGRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTL 60 Query: 77 QQSVLASSGRILAGWGAGVAIGVPLGIFMGRFDLVRQLLDPYIEFFRFIPPIAFVTLAVI 136 QQSVLASSGRILAGWGAGV IGVPLGIFMGRF+ VRQLLDPYIEFFRFIPPIAFVTLAVI Sbjct: 61 QQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVI 120 Query: 137 WLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILTTVILPSTV 196 WLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKIL+TVILPSTV Sbjct: 121 WLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTV 180 Query: 197 PFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGLLGYLF 256 PFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALG+LGYLF Sbjct: 181 PFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLF 240 Query: 257 DRVLRIATRKLLARYL 272 DRVLR+ATRKLLARYL Sbjct: 241 DRVLRVATRKLLARYL 256 >ref|YP_004405275.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Verrucosispora maris AB-18-032] gb|AEB44675.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Verrucosispora maris AB-18-032] Length = 276 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 150/225 (66%), Positives = 186/225 (82%) Query: 33 ISVVAIVGGLVLWQLVSMTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWG 92 +SV+++ G+++W LVS + FLPS +TW A++L+ DGTL SV ASS RIL GW Sbjct: 34 LSVLSVALGILVWDLVSRNYTAFFLPSPMLTWQGAVDLVRDGTLWDSVTASSTRILTGWA 93 Query: 93 AGVAIGVPLGIFMGRFDLVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYT 152 GV IGVP+G+ MG +R +LDPYI+FFRF+PPIAFVTLA+IWLGPGE SK+ALIFYT Sbjct: 94 LGVVIGVPVGLLMGCIPWLRLMLDPYIQFFRFVPPIAFVTLAIIWLGPGEASKVALIFYT 153 Query: 153 TVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILTTVILPSTVPFMVTGARIAMGNSFL 212 TVFIV LNT+AGV AV+ LRLRAA +LGA + L +V+LPSTVP +VTGAR+AMGNSFL Sbjct: 154 TVFIVALNTLAGVLAVDDLRLRAARALGASPLRTLVSVVLPSTVPHVVTGARLAMGNSFL 213 Query: 213 TVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGLLGYLFD 257 T+VSAEIV+A+ GLG+LIWTARN+++TEWVFVGI+ALGLLGYLFD Sbjct: 214 TIVSAEIVAAQSGLGSLIWTARNYAKTEWVFVGILALGLLGYLFD 258 >ref|YP_004008976.1| ABC transporter transmembrane protein [Rhodococcus equi 103S] ref|ZP_08152796.1| nitrate/sulfonate/bicarbonate ABC superfamily ATP binding cassette transporter, permease protein [Rhodococcus equi ATCC 33707] emb|CBH50298.1| putative ABC transporter integral membrane subunit [Rhodococcus equi 103S] gb|EGD26023.1| nitrate/sulfonate/bicarbonate ABC superfamily ATP binding cassette transporter, permease protein [Rhodococcus equi ATCC 33707] Length = 277 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 139/250 (55%), Positives = 187/250 (74%) Query: 22 GRRMKAARPFLISVVAIVGGLVLWQLVSMTTSPLFLPSVSMTWAAALELISDGTLQQSVL 81 G AAR L+ + + GL +W ++ P + S + W AA EL G L S+ Sbjct: 25 GASTAAARTALLWIASAAIGLAVWSFLAWWYGPTTIASPAEVWTAAKELAESGVLWTSIW 84 Query: 82 ASSGRILAGWGAGVAIGVPLGIFMGRFDLVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPG 141 AS+ RIL GW GV IG P+GI MGR ++VRQLLDPYIEFFRFIPPIAFVTLAV+W G G Sbjct: 85 ASAQRILIGWSLGVVIGAPIGILMGRVNIVRQLLDPYIEFFRFIPPIAFVTLAVVWFGIG 144 Query: 142 ELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILTTVILPSTVPFMVT 201 E SK+ LIFYT+VFIVT++TIA +++ +L+AAA+LGAG+ +++ TV+LPS+VP ++T Sbjct: 145 ETSKVVLIFYTSVFIVTVSTIAATVSISDNKLQAAANLGAGKLQLMKTVVLPSSVPGIIT 204 Query: 202 GARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGLLGYLFDRVLR 261 GAR+AMGNSFLT+VSAEIV+A G+G++IW ARN+ R +W FVGII LG++G++FDR+LR Sbjct: 205 GARLAMGNSFLTIVSAEIVAADHGIGSMIWQARNYGRIDWTFVGIIVLGIMGFVFDRILR 264 Query: 262 IATRKLLARY 271 + + + LARY Sbjct: 265 LLSTRYLARY 274 >ref|ZP_08512065.1| ABC transporter, permease protein [Paenibacillus sp. HGF7] gb|EGL15224.1| ABC transporter, permease protein [Paenibacillus sp. HGF7] Length = 285 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 121/266 (45%), Positives = 179/266 (67%) Query: 6 QTASPTAPESAMPSSLGRRMKAARPFLISVVAIVGGLVLWQLVSMTTSPLFLPSVSMTWA 65 +T + P +A +S R + L+++V + GL+LW +S+ P LP +T Sbjct: 10 KTITSKPPITAASASKPLRKPWFKKTLLTLVFWIAGLLLWHGLSLVYGPEILPGPILTAE 69 Query: 66 AALELISDGTLQQSVLASSGRILAGWGAGVAIGVPLGIFMGRFDLVRQLLDPYIEFFRFI 125 EL++DGTL Q + SS R+L GW G I +P+G+ +G+ D +R +P++ F RFI Sbjct: 70 GGYELLADGTLLQYIGISSYRVLLGWTLGSLIAIPVGLVIGKVDAIRAFAEPFLNFIRFI 129 Query: 126 PPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWK 185 PPIAF+TL ++W G GE SK+ LI Y T FIV LNT+ GV AV ++R+A S+GA +W+ Sbjct: 130 PPIAFITLFLVWFGIGETSKVVLILYATFFIVVLNTLTGVLAVEEDKIRSARSMGASEWQ 189 Query: 186 ILTTVILPSTVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVG 245 I+ VI+PSTVP+M TG R+AMG SF+ ++ AE++++ EG+G LIW +R F RT+W+FVG Sbjct: 190 IVLHVIIPSTVPYMFTGIRLAMGTSFMAIIGAEMIASNEGVGYLIWNSRLFFRTDWIFVG 249 Query: 246 IIALGLLGYLFDRVLRIATRKLLARY 271 +I LGL+G++ DR + + RKLLARY Sbjct: 250 LICLGLMGFITDRAVALLGRKLLARY 275 >ref|YP_003243648.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus sp. Y412MC10] gb|ACX65841.1| binding-protein-dependent transport systems inner membrane component [Paenibacillus sp. Y412MC10] Length = 258 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 112/231 (48%), Positives = 161/231 (69%) Query: 41 GLVLWQLVSMTTSPLFLPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGVAIGVP 100 GL +W L+S+ P LP T EL++DGTL Q + SS R+L GW G + +P Sbjct: 18 GLGVWHLLSLAYGPEILPGPVYTAKGGYELLTDGTLIQYIGISSYRVLLGWTFGSLLAIP 77 Query: 101 LGIFMGRFDLVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLN 160 +GI +G+ +R +P++ F RFIPPIAF+TL ++W G GE SKI LI Y T FIV LN Sbjct: 78 VGIMIGKVGPIRVFAEPFLNFIRFIPPIAFITLFLVWFGIGETSKIMLILYATFFIVVLN 137 Query: 161 TIAGVQAVNPLRLRAAASLGAGQWKILTTVILPSTVPFMVTGARIAMGNSFLTVVSAEIV 220 T+ GV +V ++R+A S+GA +W+I+ V++P+TVPFM TG R+AMG SF+ ++ AE++ Sbjct: 138 TLTGVLSVEEDKIRSARSMGASEWQIVLHVVIPATVPFMFTGIRLAMGTSFMAIIGAEMI 197 Query: 221 SAREGLGALIWTARNFSRTEWVFVGIIALGLLGYLFDRVLRIATRKLLARY 271 ++ EG+G LIW +R F RT+W+FVG+I LGL+G+L DR + + RKLL+RY Sbjct: 198 ASNEGVGYLIWNSRLFFRTDWIFVGLICLGLMGFLTDRAVGLLGRKLLSRY 248