BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2872.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774906.1| enzyme of extracellular polysaccharide biosy...   187   4e-46
ref|YP_003609393.1| antibiotic biosynthesis monooxygenase [Burkh...   154   4e-36
ref|YP_737184.1| antibiotic biosynthesis monooxygenase [Shewanel...   142   2e-32
ref|ZP_01115918.1| hypothetical protein MED297_00580 [Reinekea s...   139   1e-31
ref|YP_562980.1| hypothetical protein Sden_1974 [Shewanella deni...   135   2e-30

>ref|YP_003774906.1| enzyme of extracellular polysaccharide biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ62998.1| enzyme of extracellular polysaccharide biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 96/107 (89%), Positives = 105/107 (98%)

Query: 1   MSIAVTGDVPYYAVIFTSLRTEGDHGYGEMAEAMVEAASRQPGFLGLESAREEVGITVSY 60
           M IA TGD+PYYAVIFTSLRTEGDHGYG+MAEAMVEAASRQPGFLG+ESAREE+GITVSY
Sbjct: 1   MRIAATGDLPYYAVIFTSLRTEGDHGYGQMAEAMVEAASRQPGFLGVESAREELGITVSY 60

Query: 61  WASLEAIAAWKRDLDHQLAQRLGRQQWYEAYKTRICKVERDYAFTRD 107
           W+SLEAIAAWKRDLDHQ+AQRLGR+QWY+AYKTRICKVERDYAF+RD
Sbjct: 61  WSSLEAIAAWKRDLDHQMAQRLGREQWYQAYKTRICKVERDYAFSRD 107


>ref|YP_003609393.1| antibiotic biosynthesis monooxygenase [Burkholderia sp. CCGE1002]
 gb|ADG19882.1| antibiotic biosynthesis monooxygenase [Burkholderia sp. CCGE1002]
          Length = 107

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/106 (72%), Positives = 94/106 (88%)

Query: 1   MSIAVTGDVPYYAVIFTSLRTEGDHGYGEMAEAMVEAASRQPGFLGLESAREEVGITVSY 60
           MSIA T   PYYAVIFTS+RT GD+GYG+MA+AMVEAA++QPGFLG+ESAREE+GITVSY
Sbjct: 1   MSIANTRATPYYAVIFTSIRTPGDNGYGDMADAMVEAAAKQPGFLGVESAREELGITVSY 60

Query: 61  WASLEAIAAWKRDLDHQLAQRLGRQQWYEAYKTRICKVERDYAFTR 106
           W SLE+IAAWK++  H +AQ+ GR++WYE+YKTRIC VERDY F+R
Sbjct: 61  WDSLESIAAWKQNSMHLVAQQAGREKWYESYKTRICLVERDYDFSR 106


>ref|YP_737184.1| antibiotic biosynthesis monooxygenase [Shewanella sp. MR-7]
 gb|ABI42127.1| Antibiotic biosynthesis monooxygenase [Shewanella sp. MR-7]
          Length = 105

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/101 (69%), Positives = 83/101 (82%)

Query: 3   IAVTGDVPYYAVIFTSLRTEGDHGYGEMAEAMVEAASRQPGFLGLESAREEVGITVSYWA 62
           IA T   PYYAVIFTS RTEGD+GYG MA+ M+E AS+QPGFLG+ESARE+VGITVSYW+
Sbjct: 4   IANTPKPPYYAVIFTSHRTEGDNGYGRMADRMIELASKQPGFLGVESAREDVGITVSYWS 63

Query: 63  SLEAIAAWKRDLDHQLAQRLGRQQWYEAYKTRICKVERDYA 103
            LE+I  WK + +HQ AQRLG Q+WY ++KTRI KVERDY 
Sbjct: 64  DLESIRLWKANAEHQEAQRLGHQKWYSSFKTRISKVERDYG 104


>ref|ZP_01115918.1| hypothetical protein MED297_00580 [Reinekea sp. MED297]
 gb|EAR08138.1| hypothetical protein MED297_00580 [Reinekea sp. MED297]
          Length = 108

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/102 (65%), Positives = 82/102 (80%)

Query: 2   SIAVTGDVPYYAVIFTSLRTEGDHGYGEMAEAMVEAASRQPGFLGLESAREEVGITVSYW 61
           +IA T   PYYAVIFT+LRT+ D GYGEMA+ MVE AS QPGFLG+E+ RE +GITVSYW
Sbjct: 3   TIANTPKPPYYAVIFTNLRTDVDEGYGEMADRMVELASEQPGFLGMETVRETLGITVSYW 62

Query: 62  ASLEAIAAWKRDLDHQLAQRLGRQQWYEAYKTRICKVERDYA 103
             LE+I AWK+++DH+ AQRLG +QWY  +KTR+C VERDY 
Sbjct: 63  QDLESIRAWKQNVDHREAQRLGHEQWYADFKTRVCLVERDYG 104


>ref|YP_562980.1| hypothetical protein Sden_1974 [Shewanella denitrificans OS217]
 gb|ABE55257.1| conserved hypothetical protein [Shewanella denitrificans OS217]
          Length = 105

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/101 (65%), Positives = 79/101 (78%)

Query: 3   IAVTGDVPYYAVIFTSLRTEGDHGYGEMAEAMVEAASRQPGFLGLESAREEVGITVSYWA 62
           IA T   PY+AVIFTS RT GD+GY EMAE MV  A++QPGFLG+ESARE+VGITVSYWA
Sbjct: 4   IANTPAPPYFAVIFTSTRTPGDNGYSEMAEKMVTLAAQQPGFLGIESAREDVGITVSYWA 63

Query: 63  SLEAIAAWKRDLDHQLAQRLGRQQWYEAYKTRICKVERDYA 103
            L+AI  WK + +H  AQ++G Q WY+A+K RI KVERDY 
Sbjct: 64  DLDAIKQWKANTEHLTAQKMGHQSWYDAFKVRIAKVERDYG 104