BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2871.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774904.1| LysR family transcription regulator protein ... 530 e-148 gb|EGH28895.1| LysR family transcription regulator protein [Pseu... 320 2e-85 ref|ZP_07775402.1| transcriptional regulator, LysR family [Pseud... 317 2e-84 gb|EGD01084.1| LysR family regulatory protein [Burkholderia sp. ... 308 8e-82 ref|YP_003909107.1| LysR family transcriptional regulator [Burkh... 303 2e-80 >ref|YP_003774904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62996.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 275/307 (89%), Positives = 288/307 (93%) Query: 4 MKQMNIGAVDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRST 63 MKQMNI A DLNLLKTFIVIWELRSLTAAA+RLHLTQPAVSHALRRLREMFDDPLFVRST Sbjct: 1 MKQMNIAAADLNLLKTFIVIWELRSLTAAAERLHLTQPAVSHALRRLREMFDDPLFVRST 60 Query: 64 SAMVPTETAIRLHEPISRALGIIHEALHTHASFDPATATRTFHLVMSDMSCSHVLPLLME 123 SAMVPTETAIRLHEPI+RAL I+ EALHTHA FDPATATRTFHLVMSDMSCSHVLPLLME Sbjct: 61 SAMVPTETAIRLHEPIARALDILQEALHTHAQFDPATATRTFHLVMSDMSCSHVLPLLME 120 Query: 124 ELAHAAPHVSIEVQQMAMENLGAAMRNGDIDLAFGYLPGLPEDCQSQLVLNDDYVCMLRK 183 ELAHAAPHVSIEVQQMAMENLGAAMRNGD+DLAFGYLPGLPEDCQSQLVL DDY+CMLR+ Sbjct: 121 ELAHAAPHVSIEVQQMAMENLGAAMRNGDVDLAFGYLPGLPEDCQSQLVLYDDYICMLRR 180 Query: 184 THPQASEPLTMESLLQLRYVYANTNTTGHQLAEDVLRNAGVKRDFALRMPHFTVAPQIVR 243 HP A PLT+E+LLQLRYVY TNTTGHQLAEDVLRNAGVKRD ALRMPHFTVAPQIVR Sbjct: 181 EHPLAQGPLTLENLLQLRYVYTVTNTTGHQLAEDVLRNAGVKRDVALRMPHFTVAPQIVR 240 Query: 244 DTDLALFLPRSIAERHNVDEACVLLDLPLEMPRIPVSIYTHTRFSADSGIQWLRSLLIEM 303 TDLALFLPRSIAER+N+D A VLLDLPLEMPRIPVSIYTHTRFS D+GIQWLRSLLIEM Sbjct: 241 ITDLALFLPRSIAERNNLDHAFVLLDLPLEMPRIPVSIYTHTRFSGDTGIQWLRSLLIEM 300 Query: 304 FGREAEN 310 FGR + + Sbjct: 301 FGRGSHD 307 >gb|EGH28895.1| LysR family transcription regulator protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 313 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 162/303 (53%), Positives = 220/303 (72%), Gaps = 1/303 (0%) Query: 4 MKQMNIGAVDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRST 63 M +N+ +DLNLL+TF+VIWE RSLT AADRLHL+QPAVSHALRRLR++FDDPLFVR+ Sbjct: 1 MTHINMATIDLNLLRTFVVIWEHRSLTIAADRLHLSQPAVSHALRRLRDVFDDPLFVRTA 60 Query: 64 SAMVPTETAIRLHEPISRALGIIHEALHTHASFDPATATRTFHLVMSDMSCSHVLPLLME 123 ++M PT+ AIRLH PI AL II AL ++F+P TA RTF + MSDMS +VLP +ME Sbjct: 61 TSMEPTDAAIRLHGPIEHALIIIQSALMMFSNFEPKTADRTFRISMSDMSQLYVLPTMME 120 Query: 124 ELAHAAPHVSIEVQQMAMENLGAAMRNGDIDLAFGYLPGLPEDCQSQLVLNDDYVCMLRK 183 L+ AP+V ++V QM +E L A+R GD+D+A GYL E+C + +L+D+++C+LRK Sbjct: 121 VLSREAPNVRVDVLQMPIEQLAMALRKGDVDIAVGYLVEPGEECIYENLLDDEFICLLRK 180 Query: 184 THPQASEPLTMESLLQLRYVYANTNTTGHQLAED-VLRNAGVKRDFALRMPHFTVAPQIV 242 HP + L+++ +L LRYV ++N TGH L D AG+ R+ AL++P+FT+AP+IV Sbjct: 181 DHPFQEDELSIQDILALRYVDVSSNITGHGLTADAAFGKAGIAREIALKVPNFTIAPKIV 240 Query: 243 RDTDLALFLPRSIAERHNVDEACVLLDLPLEMPRIPVSIYTHTRFSADSGIQWLRSLLIE 302 +TDLAL LPR+IA + N D+ LL LP+E+P I V +Y H RF +D+GI WLR L I Sbjct: 241 ANTDLALILPRAIAIQLNRDQRYRLLSLPIELPSISVGLYCHRRFLSDAGITWLRGLFIS 300 Query: 303 MFG 305 +F Sbjct: 301 LFA 303 >ref|ZP_07775402.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] gb|EFQ63131.1| transcriptional regulator, LysR family [Pseudomonas fluorescens WH6] Length = 313 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 158/303 (52%), Positives = 218/303 (71%), Gaps = 1/303 (0%) Query: 4 MKQMNIGAVDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRST 63 M +N+ +DLNLL+TF+ IWE RSLT AA+RLHL+QPAVSHALRRLR++FDDPLFVR+ Sbjct: 1 MTHINMATIDLNLLRTFVAIWEYRSLTIAAERLHLSQPAVSHALRRLRDVFDDPLFVRTA 60 Query: 64 SAMVPTETAIRLHEPISRALGIIHEALHTHASFDPATATRTFHLVMSDMSCSHVLPLLME 123 ++M PT+ AIRLH PI AL II AL ++F+P TA RTF + MSDMS +VLP +ME Sbjct: 61 TSMEPTDAAIRLHGPIEHALIIIQSALMMFSNFEPKTADRTFRISMSDMSQLYVLPTVME 120 Query: 124 ELAHAAPHVSIEVQQMAMENLGAAMRNGDIDLAFGYLPGLPEDCQSQLVLNDDYVCMLRK 183 LA AP V ++V+QM +E L A+R G++D+A GYL L E+C + L+D+++C+LR Sbjct: 121 VLAREAPKVRLDVRQMPIEQLAIALRKGEVDIAIGYLVELGEECIYEKFLDDEFICLLRN 180 Query: 184 THPQASEPLTMESLLQLRYVYANTNTTGHQLAED-VLRNAGVKRDFALRMPHFTVAPQIV 242 HP + L+++ +L LRYV ++N TGH L D AG+ R+ AL++P+FT+AP+IV Sbjct: 181 GHPFQEDELSVQDILALRYVDVSSNITGHGLTADAAFGKAGIAREIALKVPNFTIAPKIV 240 Query: 243 RDTDLALFLPRSIAERHNVDEACVLLDLPLEMPRIPVSIYTHTRFSADSGIQWLRSLLIE 302 +T+LAL LPR IA + N D+ LL LP+E+P I V +Y H+ F +D+GI WLR L+I Sbjct: 241 ANTNLALILPRVIAMQLNRDQRYRLLSLPIELPSISVGLYCHSHFLSDAGITWLRGLIIS 300 Query: 303 MFG 305 +F Sbjct: 301 LFA 303 >gb|EGD01084.1| LysR family regulatory protein [Burkholderia sp. TJI49] Length = 310 Score = 308 bits (788), Expect = 8e-82, Method: Composition-based stats. Identities = 156/302 (51%), Positives = 211/302 (69%) Query: 4 MKQMNIGAVDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRST 63 M ++N+G DLNLL+ F+ IW+LRSLTAA DRL LTQPAVSHALRRLR +FDDPLFVR+ Sbjct: 1 MTKLNLGLADLNLLRVFLAIWDLRSLTAAGDRLELTQPAVSHALRRLRTLFDDPLFVRTP 60 Query: 64 SAMVPTETAIRLHEPISRALGIIHEALHTHASFDPATATRTFHLVMSDMSCSHVLPLLME 123 + MVPT+ A RL+ P+++AL II+EA+ A FDPATA R F + MSDMS LP L+ Sbjct: 61 TGMVPTDAAHRLYPPLAQALSIINEAVQQLARFDPATAQRVFRISMSDMSEFFFLPPLVA 120 Query: 124 ELAHAAPHVSIEVQQMAMENLGAAMRNGDIDLAFGYLPGLPEDCQSQLVLNDDYVCMLRK 183 L A + IE + ++++ AAMR+G+IDLA GY+PGL C SQ + D++VC++R Sbjct: 121 LLDREARGIRIEAVNVPVQSVSAAMRSGEIDLALGYVPGLDAGCVSQTLFVDEHVCVVRA 180 Query: 184 THPQASEPLTMESLLQLRYVYANTNTTGHQLAEDVLRNAGVKRDFALRMPHFTVAPQIVR 243 HP T E L LRYVYA+TN TGH++ E L +KRD +R+PHF VAP+IV Sbjct: 181 NHPLGKSRPTREDLAALRYVYASTNATGHRMVEQWLDELNLKRDVVVRLPHFVVAPEIVM 240 Query: 244 DTDLALFLPRSIAERHNVDEACVLLDLPLEMPRIPVSIYTHTRFSADSGIQWLRSLLIEM 303 +TDLA+ P+SIA R N +A +L LP ++P I + I++HT+F++D G+ WLR + + Sbjct: 241 NTDLAVIFPKSIARRFNRGKAFRILPLPFKLPPIEIQIHSHTQFASDPGVAWLRQTISTL 300 Query: 304 FG 305 FG Sbjct: 301 FG 302 >ref|YP_003909107.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN59816.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 306 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 156/301 (51%), Positives = 207/301 (68%) Query: 4 MKQMNIGAVDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRST 63 M + + G DLNLL+ F+ IW+LRSLTAA DRL LTQPAVSHALRRLR +F+DPLF+R+ Sbjct: 1 MNKPHPGIADLNLLRVFLAIWDLRSLTAAGDRLGLTQPAVSHALRRLRNLFEDPLFLRTP 60 Query: 64 SAMVPTETAIRLHEPISRALGIIHEALHTHASFDPATATRTFHLVMSDMSCSHVLPLLME 123 MVPT+ A RL+ P+++AL II++A+ A FDPATA R F + MSDMS + LP L+ Sbjct: 61 GGMVPTDAAYRLYPPLAQALAIINDAMQQLARFDPATAQRVFRVSMSDMSEFYFLPPLVA 120 Query: 124 ELAHAAPHVSIEVQQMAMENLGAAMRNGDIDLAFGYLPGLPEDCQSQLVLNDDYVCMLRK 183 L A + IEV + +E++ AAMR G++DLA GY+PGL E C SQ + D++VC++R Sbjct: 121 MLDREARGIRIEVANLPVESVSAAMRAGEVDLALGYVPGLDEGCVSQTLFVDEHVCLVRA 180 Query: 184 THPQASEPLTMESLLQLRYVYANTNTTGHQLAEDVLRNAGVKRDFALRMPHFTVAPQIVR 243 HP T E L LRYVYA+TN TGH++ E L KRD LR+PHF VAP+IV Sbjct: 181 GHPLRKTKPTREDLSALRYVYASTNATGHRMVEQWLDELDFKRDVVLRLPHFVVAPEIVM 240 Query: 244 DTDLALFLPRSIAERHNVDEACVLLDLPLEMPRIPVSIYTHTRFSADSGIQWLRSLLIEM 303 +TDLA+ P SIA R N +A +L LP +P I + +++HT+F+AD GI WLR L+ + Sbjct: 241 NTDLAVIFPESIARRFNRGKAFRVLPLPFSLPPIEIKVHSHTQFAADPGIAWLRQSLVAL 300 Query: 304 F 304 F Sbjct: 301 F 301