BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2869.p         (75 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774902.1| NAD-dependent formate dehydrogenase subunit ...   135   2e-30
ref|YP_582712.1| NAD-dependent formate dehydrogenase delta subun...   109   2e-22
ref|YP_004751543.1| NAD-dependent formate dehydrogenase subunit ...    94   6e-18
ref|YP_294847.1| formate dehydrogenase delta subunit [Ralstonia ...    93   1e-17
ref|YP_725160.1| NAD-dependent formate dehydrogenase delta subun...    92   2e-17

>ref|YP_003774902.1| NAD-dependent formate dehydrogenase subunit delta [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ62994.1| NAD-dependent formate dehydrogenase delta subunit protein
          [Herbaspirillum seropedicae SmR1]
          Length = 75

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/75 (92%), Positives = 72/75 (96%)

Query: 1  MNIEHLVKMANQIGSFFSTMPDRDQAIADLASHLKRFWEPRMRKAFLEHIEKTQGEGLDP 60
          MN EHLVKMANQIGSFFSTMPDRDQAIADLA+HLKRFWEPRMRKAFLEHIEKTQG G+D 
Sbjct: 1  MNTEHLVKMANQIGSFFSTMPDRDQAIADLATHLKRFWEPRMRKAFLEHIEKTQGAGVDA 60

Query: 61 IVLEAVNRHMQQLAV 75
          IVLEAVNRH+QQLAV
Sbjct: 61 IVLEAVNRHLQQLAV 75


>ref|YP_582712.1| NAD-dependent formate dehydrogenase delta subunit [Cupriavidus
          metallidurans CH34]
 gb|ABF07443.1| NAD-dependent formate dehydrogenase delta subunit [Cupriavidus
          metallidurans CH34]
          Length = 80

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/75 (69%), Positives = 63/75 (84%)

Query: 1  MNIEHLVKMANQIGSFFSTMPDRDQAIADLASHLKRFWEPRMRKAFLEHIEKTQGEGLDP 60
          M+I++LVKMANQIG+FF  MPDRD+A+ D+ASHLKRFWEPRMR+A L HI+ T GEGLDP
Sbjct: 1  MHIDNLVKMANQIGTFFEAMPDRDEALGDIASHLKRFWEPRMRRALLAHIDTTGGEGLDP 60

Query: 61 IVLEAVNRHMQQLAV 75
          IV  AV RH  ++AV
Sbjct: 61 IVQAAVARHRDKVAV 75


>ref|YP_004751543.1| NAD-dependent formate dehydrogenase subunit delta [Collimonas
          fungivorans Ter331]
 gb|AEK60720.1| NAD-dependent formate dehydrogenase delta subunit [Collimonas
          fungivorans Ter331]
          Length = 81

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/73 (67%), Positives = 56/73 (76%)

Query: 1  MNIEHLVKMANQIGSFFSTMPDRDQAIADLASHLKRFWEPRMRKAFLEHIEKTQGEGLDP 60
          MN+EHLVKMANQIG+FF TMPDR QA+AD ASHLKR WEPRMR+  L +IE   G  L+P
Sbjct: 8  MNLEHLVKMANQIGAFFETMPDRSQAMADFASHLKRSWEPRMRRELLAYIETQGGPELNP 67

Query: 61 IVLEAVNRHMQQL 73
          +VLEAV  H   L
Sbjct: 68 MVLEAVRLHAATL 80


>ref|YP_294847.1| formate dehydrogenase delta subunit [Ralstonia eutropha JMP134]
 gb|AAZ60003.1| formate dehydrogenase delta subunit [Ralstonia eutropha JMP134]
          Length = 74

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 54/69 (78%)

Query: 1  MNIEHLVKMANQIGSFFSTMPDRDQAIADLASHLKRFWEPRMRKAFLEHIEKTQGEGLDP 60
          M I++L+ MANQIGSFF  MPDR++A+AD+A H+KRFWEPRMR+A L H++   G GL  
Sbjct: 1  MKIDNLITMANQIGSFFEAMPDREEALADIAGHIKRFWEPRMRRALLGHVDADAGTGLLE 60

Query: 61 IVLEAVNRH 69
          IV EAV RH
Sbjct: 61 IVQEAVGRH 69


>ref|YP_725160.1| NAD-dependent formate dehydrogenase delta subunit [Ralstonia
          eutropha H16]
 emb|CAJ91792.1| NAD-dependent formate dehydrogenase delta subunit [Ralstonia
          eutropha H16]
          Length = 74

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 55/73 (75%)

Query: 1  MNIEHLVKMANQIGSFFSTMPDRDQAIADLASHLKRFWEPRMRKAFLEHIEKTQGEGLDP 60
          M I++L+ MANQIGSFF  MPDR++A++D+A H+KRFWEPRMRKA L H++   G GL  
Sbjct: 1  MKIDNLITMANQIGSFFEAMPDREEAVSDIAGHIKRFWEPRMRKALLGHVDAEAGSGLLD 60

Query: 61 IVLEAVNRHMQQL 73
          IV EA+ RH   L
Sbjct: 61 IVREALGRHRAML 73