BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2868.p (280 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774901.1| formate dehydrogenase regulatory subunit [He... 471 e-131 ref|YP_001101653.1| formate dehydrogenase formation protein subu... 381 e-104 ref|YP_001355341.1| formate dehydrogenase associated protein [Ja... 375 e-102 ref|YP_004751542.1| formate dehydrogenase chain D [Collimonas fu... 355 6e-96 ref|ZP_04578059.1| FdsC protein [Oxalobacter formigenes OXCC13] ... 335 6e-90 >ref|YP_003774901.1| formate dehydrogenase regulatory subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62993.1| formate dehydrogenase regulatory subunit protein [Herbaspirillum seropedicae SmR1] Length = 280 Score = 471 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 260/280 (92%), Positives = 267/280 (95%) Query: 1 MNIRNSSSPVIDDTTGDYATFARVQVDRWRDGQRETVDDVVAEEVPIALEYNGISHAVMM 60 MN SSP+IDD+TGDYATF VQVDRWRDGQRETV+DVVAEEVPIALEYNGISHAVMM Sbjct: 1 MNTSKPSSPLIDDSTGDYATFTHVQVDRWRDGQRETVEDVVAEEVPIALEYNGISHAVMM 60 Query: 61 ATPADLEDFALGFSLTEGILAAPGELYECEIVPGCEGVQVQMRIATERFVALKEKRRNLT 120 ATPADLEDFALGFSLTEGILA P ELYECEIVPGCEGVQVQMRIATERFVALKEKRRNLT Sbjct: 61 ATPADLEDFALGFSLTEGILADPSELYECEIVPGCEGVQVQMRIATERFVALKEKRRNLT 120 Query: 121 GRTGCGLCGAETLEQAVRHPQAVRGGAVFSVEQVHAAFEQMQAGQHLQQATGATHAAAWM 180 GRTGCGLCGAETLEQAVRHPQAV+GGA FSV+QVHAAFEQMQAGQ LQQATGATHAAAWM Sbjct: 121 GRTGCGLCGAETLEQAVRHPQAVQGGASFSVQQVHAAFEQMQAGQQLQQATGATHAAAWM 180 Query: 181 EASGRIVLVREDVGRHNALDKLIGALAEEETDFSQGAAIITSRASYEMVQKAATVGIGFI 240 +ASGRIVLVREDVGRHNALDKLIGALAEE DF+QGAAIITSRASYEMVQKAATVGI FI Sbjct: 181 DASGRIVLVREDVGRHNALDKLIGALAEEGEDFAQGAAIITSRASYEMVQKAATVGISFI 240 Query: 241 AAVSAPTALAIRLAEETDVTLLGFVRKQGHVVYARPHRLR 280 AAVSAPTALAIRLAEETDVTLLGFVRKQGHVVYARPHRLR Sbjct: 241 AAVSAPTALAIRLAEETDVTLLGFVRKQGHVVYARPHRLR 280 >ref|YP_001101653.1| formate dehydrogenase formation protein subunit FdsC [Herminiimonas arsenicoxydans] emb|CAL63532.1| Formate dehydrogenase, accessory protein [Herminiimonas arsenicoxydans] Length = 276 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 193/266 (72%), Positives = 222/266 (83%) Query: 14 TTGDYATFARVQVDRWRDGQRETVDDVVAEEVPIALEYNGISHAVMMATPADLEDFALGF 73 T + RV V++W +RE +D VAEEVPIALEYNGISHAVM+A+P DLEDFALGF Sbjct: 5 TNEERTALVRVSVEKWDADRREFCEDDVAEEVPIALEYNGISHAVMLASPYDLEDFALGF 64 Query: 74 SLTEGILAAPGELYECEIVPGCEGVQVQMRIATERFVALKEKRRNLTGRTGCGLCGAETL 133 SL+EGIL P ELY+CE+VPGCEG+QVQM+IATERFVALK+KRRNLTGRTGCGLCGAETL Sbjct: 65 SLSEGILKDPSELYDCEVVPGCEGIQVQMQIATERFVALKDKRRNLTGRTGCGLCGAETL 124 Query: 134 EQAVRHPQAVRGGAVFSVEQVHAAFEQMQAGQHLQQATGATHAAAWMEASGRIVLVREDV 193 QAVRHP AV GG FS EQ+HA + MQA Q LQ+ TGATHAAAWM A G I LVRED+ Sbjct: 125 AQAVRHPDAVTGGTSFSGEQIHAGMKAMQAQQRLQRHTGATHAAAWMNADGSIDLVREDI 184 Query: 194 GRHNALDKLIGALAEEETDFSQGAAIITSRASYEMVQKAATVGIGFIAAVSAPTALAIRL 253 GRHNALDKLIGA+A E+ DF GAA+ITSRASYEMVQK+AT+GI F+AA+SAPT+LAI+L Sbjct: 185 GRHNALDKLIGAMANEKRDFGHGAALITSRASYEMVQKSATMGIAFLAAISAPTSLAIKL 244 Query: 254 AEETDVTLLGFVRKQGHVVYARPHRL 279 AEE +VTL+GFVR HVVYA+ HRL Sbjct: 245 AEEANVTLVGFVRSNSHVVYAQSHRL 270 >ref|YP_001355341.1| formate dehydrogenase associated protein [Janthinobacterium sp. Marseille] gb|ABR89680.1| formate dehydrogenase associated protein [Janthinobacterium sp. Marseille] Length = 275 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 187/266 (70%), Positives = 224/266 (84%) Query: 14 TTGDYATFARVQVDRWRDGQRETVDDVVAEEVPIALEYNGISHAVMMATPADLEDFALGF 73 T + RV V++W Q +D VAEEVPIALEYNGISHAVM+A+P DLEDFALGF Sbjct: 5 TDDERTALVRVPVEKWDADQHTICEDDVAEEVPIALEYNGISHAVMLASPYDLEDFALGF 64 Query: 74 SLTEGILAAPGELYECEIVPGCEGVQVQMRIATERFVALKEKRRNLTGRTGCGLCGAETL 133 SL+EGIL ELY+CE+VPGCEG+QVQMRIATERFV LK+KRRN+TGRTGCGLCGAETL Sbjct: 65 SLSEGILKDKSELYDCEVVPGCEGIQVQMRIATERFVTLKDKRRNMTGRTGCGLCGAETL 124 Query: 134 EQAVRHPQAVRGGAVFSVEQVHAAFEQMQAGQHLQQATGATHAAAWMEASGRIVLVREDV 193 EQA+RHPQA G A+FS Q++A + M++ Q LQ+ TGATHAAAW+ G + LVREDV Sbjct: 125 EQAIRHPQATVGHAMFSARQIYAGMKAMKSQQRLQKHTGATHAAAWLNLDGSVDLVREDV 184 Query: 194 GRHNALDKLIGALAEEETDFSQGAAIITSRASYEMVQKAATVGIGFIAAVSAPTALAIRL 253 GRHNALDKLIGA+A+++ DF+QGAA+ITSRASYEMVQK+AT+GIGF+AA+SAPT+LAI+L Sbjct: 185 GRHNALDKLIGAMADDKRDFTQGAALITSRASYEMVQKSATMGIGFLAAISAPTSLAIQL 244 Query: 254 AEETDVTLLGFVRKQGHVVYARPHRL 279 AEET+VTL+GFVR Q HVVYA+ HRL Sbjct: 245 AEETNVTLIGFVRDQSHVVYAQAHRL 270 >ref|YP_004751542.1| formate dehydrogenase chain D [Collimonas fungivorans Ter331] gb|AEK60719.1| Formate dehydrogenase chain D [Collimonas fungivorans Ter331] Length = 271 Score = 355 bits (910), Expect = 6e-96, Method: Composition-based stats. Identities = 189/265 (71%), Positives = 219/265 (82%), Gaps = 2/265 (0%) Query: 17 DYATFARVQVDRWRDGQRETVDDVVAEEVPIALEYNGISHAVMMATPADLEDFALGFSLT 76 +YA+ V+V++WR+G DVVAEEVP+ALEYNGISHAVMMA+PADLEDFALGFSLT Sbjct: 5 EYASSTEVEVEQWRNGAVGKSRDVVAEEVPVALEYNGISHAVMMASPADLEDFALGFSLT 64 Query: 77 EGILAAPGELYECEIVPGCEGVQVQMRIATERFVALKEKRRNLTGRTGCGLCGAETLEQA 136 EGIL EL++CE+V +G+QVQM+IATERFVALKEKRRNLTGRTGCGLCGAETL+QA Sbjct: 65 EGILQDRSELFDCEVVTAADGIQVQMQIATERFVALKEKRRNLTGRTGCGLCGAETLQQA 124 Query: 137 VRHPQAVRGGAVFSVEQVHAAFEQMQAGQHLQQATGATHAAAWMEASGRIVLVREDVGRH 196 VR P V A FS ++AA +MQ QHLQ+ TGATHAAAW++A G+I LVREDVGRH Sbjct: 125 VRKPAPVLSAARFSAAGIYAAMAEMQQQQHLQKVTGATHAAAWLQADGKIALVREDVGRH 184 Query: 197 NALDKLIGALAEE--ETDFSQGAAIITSRASYEMVQKAATVGIGFIAAVSAPTALAIRLA 254 NALDKLIGAL++E DFS GA +ITSRASYEMVQKAA++ GFI AVSAPTALAIRLA Sbjct: 185 NALDKLIGALSQENPRRDFSSGAVLITSRASYEMVQKAASMSCGFIVAVSAPTALAIRLA 244 Query: 255 EETDVTLLGFVRKQGHVVYARPHRL 279 E+ +VTLLGFVR+ GHVVYA P RL Sbjct: 245 EQANVTLLGFVRQPGHVVYAHPQRL 269 >ref|ZP_04578059.1| FdsC protein [Oxalobacter formigenes OXCC13] gb|EEO29032.1| FdsC protein [Oxalobacter formigenes OXCC13] Length = 266 Score = 335 bits (858), Expect = 6e-90, Method: Composition-based stats. Identities = 170/262 (64%), Positives = 204/262 (77%) Query: 18 YATFARVQVDRWRDGQRETVDDVVAEEVPIALEYNGISHAVMMATPADLEDFALGFSLTE 77 Y T +V V W++GQ+ DD VAEEVP+AL YNGISHAVM+ATPADLEDFALGFSLTE Sbjct: 4 YDTAEKVSVCHWKNGQKVLRDDTVAEEVPVALVYNGISHAVMLATPADLEDFALGFSLTE 63 Query: 78 GILAAPGELYECEIVPGCEGVQVQMRIATERFVALKEKRRNLTGRTGCGLCGAETLEQAV 137 GI+ P E+Y EIV G++V+M IA+ERF LKE+RRNLTGRTGCGLCG ++L QAV Sbjct: 64 GIIEVPEEIYGTEIVEVENGIRVEMDIASERFQYLKERRRNLTGRTGCGLCGTDSLSQAV 123 Query: 138 RHPQAVRGGAVFSVEQVHAAFEQMQAGQHLQQATGATHAAAWMEASGRIVLVREDVGRHN 197 R P V VFS E +H FE+M Q L++ TGATHAAAW++A+G + LVREDVGRHN Sbjct: 124 RMPPLVMSNPVFSTEVIHWGFEKMDELQLLKKKTGATHAAAWLDANGNVGLVREDVGRHN 183 Query: 198 ALDKLIGALAEEETDFSQGAAIITSRASYEMVQKAATVGIGFIAAVSAPTALAIRLAEET 257 ALDKLIGAL ++ D S GAA++TSRASYEMVQK + GIG +AAVSAPTALAI++A E Sbjct: 184 ALDKLIGALVRQKADRSTGAALVTSRASYEMVQKCGSAGIGMLAAVSAPTALAIQIANEI 243 Query: 258 DVTLLGFVRKQGHVVYARPHRL 279 ++TLLGFVR+ GH VYA P RL Sbjct: 244 NLTLLGFVRENGHTVYAHPQRL 265