BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2865.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta sub... 442 e-122 ref|YP_004751540.1| NAD-dependent formate dehydrogenase subunit ... 369 e-100 ref|YP_004752658.1| NAD-dependent formate dehydrogenase subunit ... 367 1e-99 ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta sub... 363 2e-98 ref|YP_725157.1| NAD-dependent formate dehydrogenase beta subuni... 348 5e-94 >ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62991.1| NAD-dependent formate dehydrogenase beta subunit protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 224/244 (91%), Positives = 231/244 (94%) Query: 2 MSTNEPVTIYVPRDSTALALGANEVAAAIAAEAQKRGQSIKLVRNGSRGMFWLEPLVEVA 61 MS N+ VT+YVPRDSTALALGANEVAAAI AEA KRGQSIKLVRNGSRGMFWLEPLVEVA Sbjct: 1 MSANDTVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIKLVRNGSRGMFWLEPLVEVA 60 Query: 62 TAAGRVAYGPVAPEDVSGLFDAGLLAGGQHTLHLGLTEEIGFLKNQERLTFARVGIIDPL 121 TAAGRVAYGPVAPEDV+GLFDAGLL GGQH LHLGLTEEI FLKNQERLTFARVGIIDPL Sbjct: 61 TAAGRVAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPL 120 Query: 122 SLEDYLAHEGYAGLKNALAKTPEAIVQQMIDSGLRGRGGAAFPTGIKWQTVLRAPAAQKY 181 SLEDYLAHEGY GLKNALAKTPEAIVQ+MI SGLRGRGGAAFPTGIKWQTVLRA +AQKY Sbjct: 121 SLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKY 180 Query: 182 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAAVAVGATEGYIYVRSEYPHAIATMNDA 241 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIA VAVGATEGYIYVRSEYPH+IAT+ A Sbjct: 181 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQA 240 Query: 242 IAIA 245 IAIA Sbjct: 241 IAIA 244 >ref|YP_004751540.1| NAD-dependent formate dehydrogenase subunit beta [Collimonas fungivorans Ter331] gb|AEK60717.1| NAD-dependent formate dehydrogenase beta subunit [Collimonas fungivorans Ter331] Length = 518 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 192/238 (80%), Positives = 209/238 (87%) Query: 8 VTIYVPRDSTALALGANEVAAAIAAEAQKRGQSIKLVRNGSRGMFWLEPLVEVATAAGRV 67 +TIYVPRDSTALALGANEVAAAI AEA KRGQ I LVRNGSRGMFWLEPLVEVATAAGRV Sbjct: 3 ITIYVPRDSTALALGANEVAAAIVAEAAKRGQEITLVRNGSRGMFWLEPLVEVATAAGRV 62 Query: 68 AYGPVAPEDVSGLFDAGLLAGGQHTLHLGLTEEIGFLKNQERLTFARVGIIDPLSLEDYL 127 YGPV PEDV+GLFDA +AGGQH L LGL +EI +LK QERLTFARVGI DP+SL+DYL Sbjct: 63 GYGPVEPEDVAGLFDADFMAGGQHPLALGLVDEIPYLKKQERLTFARVGITDPVSLDDYL 122 Query: 128 AHEGYAGLKNALAKTPEAIVQQMIDSGLRGRGGAAFPTGIKWQTVLRAPAAQKYVVCNAD 187 AHEGY GL+ ALA IVQ+++DSGLRGRGGAAFPTGIKW+TVL A +AQKY+VCNAD Sbjct: 123 AHEGYQGLQKALAMQSADIVQEVLDSGLRGRGGAAFPTGIKWKTVLGAQSAQKYIVCNAD 182 Query: 188 EGDSGTFSDRMIMEDDPFTLIEGMTIAAVAVGATEGYIYVRSEYPHAIATMNDAIAIA 245 EGDSGTFSDRMIMEDDPF LIEGMTIAA+AVGAT GYIYVRSEYPHAIA ++ AI A Sbjct: 183 EGDSGTFSDRMIMEDDPFVLIEGMTIAALAVGATRGYIYVRSEYPHAIAALDQAIVTA 240 >ref|YP_004752658.1| NAD-dependent formate dehydrogenase subunit beta [Collimonas fungivorans Ter331] gb|AEK61835.1| NAD-dependent formate dehydrogenase beta subunit [Collimonas fungivorans Ter331] Length = 530 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 194/243 (79%), Positives = 211/243 (86%), Gaps = 5/243 (2%) Query: 8 VTIYVPRDSTALALGANEVAAAIAAEAQKRGQSIKLVRNGSRGMFWLEPLVEVATAAGRV 67 +T+YVPRDSTALALGANEVAAAI AEA KRGQ I LVRNGSRGMFWLEPLVEVATAAGR+ Sbjct: 3 ITVYVPRDSTALALGANEVAAAIVAEAAKRGQQITLVRNGSRGMFWLEPLVEVATAAGRI 62 Query: 68 AYGPVAPEDVSGLFDAGL-----LAGGQHTLHLGLTEEIGFLKNQERLTFARVGIIDPLS 122 YGPVAPEDV+GLFDA L LAGGQH L LGL +EI +LKNQERLTFARVGI DP+S Sbjct: 63 GYGPVAPEDVAGLFDADLFNADVLAGGQHRLALGLVDEIPYLKNQERLTFARVGITDPVS 122 Query: 123 LEDYLAHEGYAGLKNALAKTPEAIVQQMIDSGLRGRGGAAFPTGIKWQTVLRAPAAQKYV 182 L+DYLAHEGY GL+NALA IVQ+++DSGLRGRGGAAFPTGIKW+TVL A AQKY+ Sbjct: 123 LDDYLAHEGYLGLQNALAMQSADIVQEVLDSGLRGRGGAAFPTGIKWKTVLGAQGAQKYI 182 Query: 183 VCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAAVAVGATEGYIYVRSEYPHAIATMNDAI 242 VCNADEGDSGTFSDRMIMEDDPF LIEGMTIA +AV A GYIYVRSEYPHAIA +N+AI Sbjct: 183 VCNADEGDSGTFSDRMIMEDDPFVLIEGMTIAGLAVNADYGYIYVRSEYPHAIAVLNEAI 242 Query: 243 AIA 245 A A Sbjct: 243 ATA 245 >ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] gb|ABR89660.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 518 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 181/242 (74%), Positives = 201/242 (83%) Query: 8 VTIYVPRDSTALALGANEVAAAIAAEAQKRGQSIKLVRNGSRGMFWLEPLVEVATAAGRV 67 VTI+VPRDSTALALGANE AAAI EA+ RG IKLVRNGSRGMFWLEPLVEVAT AGR+ Sbjct: 3 VTIFVPRDSTALALGANETAAAIEREAKARGIDIKLVRNGSRGMFWLEPLVEVATDAGRI 62 Query: 68 AYGPVAPEDVSGLFDAGLLAGGQHTLHLGLTEEIGFLKNQERLTFARVGIIDPLSLEDYL 127 +GP+ +V+GLFDAG GG H LGLTEEI +LK QERL F RVGI DP+SLEDYL Sbjct: 63 GFGPIEEHEVAGLFDAGFTTGGSHPKALGLTEEIPYLKKQERLQFVRVGITDPVSLEDYL 122 Query: 128 AHEGYAGLKNALAKTPEAIVQQMIDSGLRGRGGAAFPTGIKWQTVLRAPAAQKYVVCNAD 187 AH+GY GLK A+A P AIVQ++ DSGLRGRGGAAFPTGIKW+TVL A AAQKY+ CNAD Sbjct: 123 AHDGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAFPTGIKWKTVLGAEAAQKYIACNAD 182 Query: 188 EGDSGTFSDRMIMEDDPFTLIEGMTIAAVAVGATEGYIYVRSEYPHAIATMNDAIAIATR 247 EGDSGTFSDRM+MEDDPF LIEGMTIA +AV ATEGYIYVRSEYPH+IA +N+AI A Sbjct: 183 EGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVKATEGYIYVRSEYPHSIANLNEAIVAANA 242 Query: 248 AA 249 A Sbjct: 243 AG 244 >ref|YP_725157.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia eutropha H16] emb|CAJ91789.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia eutropha H16] Length = 520 Score = 348 bits (894), Expect = 5e-94, Method: Composition-based stats. Identities = 183/243 (75%), Positives = 205/243 (84%), Gaps = 1/243 (0%) Query: 9 TIYVPRDSTALALGANEVAAAIAAEAQKRGQSIKLVRNGSRGMFWLEPLVEVATAAGRVA 68 TI+VPRDSTALALGA++VA AIA EA R + +++VRNGSRGMFWLEPLVEV T AGRVA Sbjct: 6 TIFVPRDSTALALGADDVARAIAREAAARNEHVRIVRNGSRGMFWLEPLVEVQTGAGRVA 65 Query: 69 YGPVAPEDVSGLFDAGLLAGGQHTLHLGLTEEIGFLKNQERLTFARVGIIDPLSLEDYLA 128 YGPV+ DV GLFDAGLL GG+H L G+TEEI FLK QERLTFARVGI DPLSL+DY A Sbjct: 66 YGPVSAADVPGLFDAGLLQGGEHALSQGVTEEIPFLKQQERLTFARVGITDPLSLDDYRA 125 Query: 129 HEGYAGLKNALAKTPEAIVQQMIDSGLRGRGGAAFPTGIKWQTVLRAPAAQKYVVCNADE 188 HEG+AGL+ ALA P IVQ++ DSGLRGRGGAAFPTGIKW+TVL A +A KY+VCNADE Sbjct: 126 HEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAAFPTGIKWKTVLGAQSAVKYIVCNADE 185 Query: 189 GDSGTFSDRMIMEDDPFTLIEGMTIAAVAVGATEGYIYVRSEYPHAIATMNDAIAIATRA 248 GDSGTFSDRM+MEDDPF LIEGMTIAA+AVGA +GYIY RSEYPHAIA + AI IA A Sbjct: 186 GDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAEQGYIYCRSEYPHAIAVLESAIGIAN-A 244 Query: 249 ATW 251 A W Sbjct: 245 AGW 247