BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2864.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774898.1| NAD-dependent formate dehydrogenase subunit ... 301 2e-80 ref|YP_001101656.1| NAD-dependent formate dehydrogenase subunit ... 216 8e-55 ref|YP_001355344.1| formate dehydrogenase, cytochrome b556 subun... 210 5e-53 ref|YP_004752657.1| NAD-dependent formate dehydrogenase subunit ... 209 8e-53 ref|YP_004751539.1| NAD-dependent formate dehydrogenase subunit ... 206 1e-51 >ref|YP_003774898.1| NAD-dependent formate dehydrogenase subunit gamma [Herbaspirillum seropedicae SmR1] gb|ADJ62990.1| NAD-dependent formate dehydrogenase gamma subunit protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 301 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 153/158 (96%), Positives = 157/158 (99%) Query: 1 MKRQQVFDVAAVRGIIAERKDMAGAMLPILHGIQDKVGYIPADAVPMIAGELNVSRAEVH 60 MKRQQVFDVAAVRGIIAERK+MAGAMLPILHGIQ+KVGYIPADAVPMIAGELNVSRAEVH Sbjct: 1 MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH 60 Query: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHETSADGQFTLEP 120 GVISFYHFFRQEPAGRHVVQVCRAEACQARG EALAEHAQNVLGCGFH+TSADGQFTLEP Sbjct: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGGEALAEHAQNVLGCGFHDTSADGQFTLEP 120 Query: 121 VYCLGQCAIGPNLTLDDQLHARVDADKFKRLIQAKREA 158 VYCLGQCAIGPNLTLDD+LHARVDADKFKRLIQAKREA Sbjct: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKREA 158 >ref|YP_001101656.1| NAD-dependent formate dehydrogenase subunit gamma: FdsG [Herminiimonas arsenicoxydans] emb|CAL63535.1| NAD-dependent formate dehydrogenase gamma subunit [Herminiimonas arsenicoxydans] Length = 159 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 101/156 (64%), Positives = 125/156 (80%) Query: 1 MKRQQVFDVAAVRGIIAERKDMAGAMLPILHGIQDKVGYIPADAVPMIAGELNVSRAEVH 60 M + FD+AAV IIA RK+M GA+LPILH IQ+ VGYIP+ VP IA LN+SRAEVH Sbjct: 1 MSAEHSFDMAAVESIIASRKEMPGALLPILHDIQNTVGYIPSLVVPAIADGLNISRAEVH 60 Query: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHETSADGQFTLEP 120 GVI++YHFFRQ PAG+HV+Q+CRAEACQARG E+L +HA+ +LGC FH+ + DG+F+LE Sbjct: 61 GVITYYHFFRQHPAGKHVIQICRAEACQARGCESLVDHAKELLGCDFHQITDDGKFSLEV 120 Query: 121 VYCLGQCAIGPNLTLDDQLHARVDADKFKRLIQAKR 156 VYCLGQCA GP + +DD L+ARV +KF LIQAKR Sbjct: 121 VYCLGQCASGPAIQIDDDLYARVSKEKFNNLIQAKR 156 >ref|YP_001355344.1| formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) [Janthinobacterium sp. Marseille] gb|ABR90035.1| formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) [Janthinobacterium sp. Marseille] Length = 159 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 102/156 (65%), Positives = 120/156 (76%) Query: 1 MKRQQVFDVAAVRGIIAERKDMAGAMLPILHGIQDKVGYIPADAVPMIAGELNVSRAEVH 60 M Q FD+AAV IIA+RK GA+LPILH IQ VGYIP VP IA LN+SRAEVH Sbjct: 1 MNTQTPFDLAAVEAIIAQRKATPGALLPILHDIQGVVGYIPPSIVPAIAEGLNISRAEVH 60 Query: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHETSADGQFTLEP 120 GVI++YHFFRQ P G HVVQ+CRAEACQARG E+LA+HA+ +LGC FH T+ D +FTL+ Sbjct: 61 GVITYYHFFRQHPVGEHVVQICRAEACQARGCESLADHAKELLGCDFHGTTDDNKFTLQT 120 Query: 121 VYCLGQCAIGPNLTLDDQLHARVDADKFKRLIQAKR 156 VYCLGQCA GP + +DD L+ARV +KF LIQAKR Sbjct: 121 VYCLGQCASGPAIQIDDDLYARVSKEKFNSLIQAKR 156 >ref|YP_004752657.1| NAD-dependent formate dehydrogenase subunit gamma [Collimonas fungivorans Ter331] gb|AEK61834.1| NAD-dependent formate dehydrogenase gamma subunit [Collimonas fungivorans Ter331] Length = 159 Score = 209 bits (533), Expect = 8e-53, Method: Composition-based stats. Identities = 102/156 (65%), Positives = 125/156 (80%) Query: 1 MKRQQVFDVAAVRGIIAERKDMAGAMLPILHGIQDKVGYIPADAVPMIAGELNVSRAEVH 60 M + QV D+ + +IA +K + GA+LPILH IQ+ GYIPA++VP+IA ELN+SRAEVH Sbjct: 1 MGKHQVVDMEHIASLIAAQKTLPGALLPILHAIQESAGYIPAESVPVIAQELNLSRAEVH 60 Query: 61 GVISFYHFFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHETSADGQFTLEP 120 GVISFYH+FRQ PAGRHVVQ+CRAEACQARGS AL HA+ VLGC FH T+ DG+F+LE Sbjct: 61 GVISFYHYFRQHPAGRHVVQICRAEACQARGSAALEAHAKTVLGCDFHGTAKDGEFSLEA 120 Query: 121 VYCLGQCAIGPNLTLDDQLHARVDADKFKRLIQAKR 156 VYCLGQCA GP + ++D+LHARV K RL+QAKR Sbjct: 121 VYCLGQCACGPAIMINDELHARVSHGKLDRLLQAKR 156 >ref|YP_004751539.1| NAD-dependent formate dehydrogenase subunit gamma [Collimonas fungivorans Ter331] gb|AEK60716.1| NAD-dependent formate dehydrogenase gamma subunit [Collimonas fungivorans Ter331] Length = 173 Score = 206 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 102/149 (68%), Positives = 126/149 (84%) Query: 8 DVAAVRGIIAERKDMAGAMLPILHGIQDKVGYIPADAVPMIAGELNVSRAEVHGVISFYH 67 D+ V+ II + + + GAMLP+LH IQD +GY+P+ AVP+IA +LN+SRAEVHGVISFYH Sbjct: 22 DLDQVKSIIQKYQALPGAMLPVLHAIQDALGYVPSSAVPLIAEQLNLSRAEVHGVISFYH 81 Query: 68 FFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHETSADGQFTLEPVYCLGQC 127 FRQ+PAGRHVVQ+CRAEACQA G++ALA HA+ LGC FH TS+DGQFTLEPVYCLGQC Sbjct: 82 HFRQQPAGRHVVQLCRAEACQAVGADALAAHAKAALGCDFHGTSSDGQFTLEPVYCLGQC 141 Query: 128 AIGPNLTLDDQLHARVDADKFKRLIQAKR 156 A GP++ +DD LHARV +DKF RL++AKR Sbjct: 142 ACGPSMLIDDDLHARVSSDKFNRLVRAKR 170