BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2863.p (580 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774897.1| major facilitator superfamily permease [Herb... 999 0.0 ref|YP_004751538.1| integral membrane transporter [Collimonas fu... 805 0.0 gb|AEL07508.1| integral membrane transporter [Xanthomonas campes... 748 0.0 ref|NP_637710.1| integral membrane transporter [Xanthomonas camp... 746 0.0 ref|ZP_08177114.1| Major Facilitator Superfamily transporter [Xa... 746 0.0 >ref|YP_003774897.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ62989.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 580 Score = 999 bits (2583), Expect = 0.0, Method: Composition-based stats. Identities = 556/580 (95%), Positives = 565/580 (97%) Query: 1 MGRCHDPPLPALRCNPSFDLPTSHTHKIFGGIMAFDFLNKEHTVAKPGFNRWLVPPAALA 60 M R HDP LPAL PSF LPT THKI GGIMAFDFLNKEHTVAKPGFNRWLVPPAALA Sbjct: 1 MERFHDPFLPALPRPPSFVLPTHITHKISGGIMAFDFLNKEHTVAKPGFNRWLVPPAALA 60 Query: 61 IHLCIGMAYGFSVFWLPLSKALGVTAPIACGADIGFFAQVFSSTCDWKISMLGWMYTMFF 120 IHLCIGMAYGFSVFWLPLSKALGVTAPIACGAD+GFFAQVFSS+CDWKISMLGWMYTMFF Sbjct: 61 IHLCIGMAYGFSVFWLPLSKALGVTAPIACGADVGFFAQVFSSSCDWKISMLGWMYTMFF 120 Query: 121 VLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLLISALGVKTHQIWLMWLGSGVIGGVG 180 VLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLLISALGVKTHQIWLMWLGSGVIGGVG Sbjct: 121 VLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLLISALGVKTHQIWLMWLGSGVIGGVG 180 Query: 181 LGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGALVGTPLADALMKKFASPTSVGVWET 240 LGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGALVGTPLADA MKKFA+PTSVGVWET Sbjct: 181 LGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGALVGTPLADAAMKKFATPTSVGVWET 240 Query: 241 FVVMAVIYFVFMMAGAFGYRVPPTGWKPAGWTPPVAKSSATMITQNHVHVSKVWGIPQFW 300 FVVMAVIYFVFMMAGAFGYRVPPTGWKPAGWTPPVAKSSATMITQNHVHVSKVWGIPQFW Sbjct: 241 FVVMAVIYFVFMMAGAFGYRVPPTGWKPAGWTPPVAKSSATMITQNHVHVSKVWGIPQFW 300 Query: 301 LVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGVDIGFNDLSVEQKAGIAALAAGFTGL 360 LVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGV+IGFNDLSVEQK IAALAAGFTGL Sbjct: 301 LVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGVNIGFNDLSVEQKTAIAALAAGFTGL 360 Query: 361 ISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLYVSLPWSAKSGNIPLFVGAVCIILS 420 ISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLYVSLPWSAK+GNIPLFVGAVCIILS Sbjct: 361 ISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLYVSLPWSAKAGNIPLFVGAVCIILS 420 Query: 421 MYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATAGILGPVVVNYMREYQLSLGMPKNE 480 MYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATAGILGPVVVNYMREYQL+ GMPKNE Sbjct: 421 MYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATAGILGPVVVNYMREYQLAQGMPKNE 480 Query: 481 VYNTTMYILAGMLVLGLICNLLIRPVAAKHFMTPEELAREKQLAHEKSAADAAVTAGSGD 540 VYNTTMYILAGML+LGLICNLLIRPVAAKHFMTPEELA EK+LAHEKSAADAAVTAGSGD Sbjct: 481 VYNTTMYILAGMLILGLICNLLIRPVAAKHFMTPEELAHEKKLAHEKSAADAAVTAGSGD 540 Query: 541 MSQIGSGGNPLFIGLAWAAVGIPLIWGITLVLQKSAVLFR 580 MSQIGSGGNP+FIGLAWAAVGIPLIWGITLVLQKSAVLFR Sbjct: 541 MSQIGSGGNPVFIGLAWAAVGIPLIWGITLVLQKSAVLFR 580 >ref|YP_004751538.1| integral membrane transporter [Collimonas fungivorans Ter331] gb|AEK60715.1| integral membrane transporter [Collimonas fungivorans Ter331] Length = 545 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 440/544 (80%), Positives = 495/544 (90%), Gaps = 1/544 (0%) Query: 37 FLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGADIGF 96 FL+KE T+A PGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKA+G+ +AC D+ F Sbjct: 3 FLDKERTIAGPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKAIGIKESLACSKDMSF 62 Query: 97 FAQVFSSTCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLLI 156 FA++F+STCDWKISMLGW+YTMFFVLLG SAA+WGGWLEH GPRKAG VAA+CWCGGLLI Sbjct: 63 FAEIFASTCDWKISMLGWIYTMFFVLLGTSAAIWGGWLEHVGPRKAGFVAALCWCGGLLI 122 Query: 157 SALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAL 216 SA GV HQIWLMW+GSG+IGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAL Sbjct: 123 SAFGVYHHQIWLMWIGSGLIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAL 182 Query: 217 VGTPLADALMKKFASPTSVGVWETFVVMAVIYFVFMMAGAFGYRVPPTGWKPAGWTPPVA 276 +G+PLAD LMK FAS SVGVW+TFVVMA+IYFVFMMAGAFGYR+PP+GWKPAGWTPP A Sbjct: 183 IGSPLADKLMKYFASDVSVGVWQTFVVMALIYFVFMMAGAFGYRIPPSGWKPAGWTPPAA 242 Query: 277 KSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGVD 336 +A MITQ+HVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIG+ASPMLQEVFGG LLGV Sbjct: 243 NGNA-MITQHHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGMASPMLQEVFGGHLLGVG 301 Query: 337 IGFNDLSVEQKAGIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLY 396 F +LS+EQK IAA+AAGFTGLISLFNIGGRF WASCSD+ GRKMTY +FFVLGF+LY Sbjct: 302 TKFTELSLEQKGAIAAIAAGFTGLISLFNIGGRFVWASCSDYIGRKMTYVVFFVLGFILY 361 Query: 397 VSLPWSAKSGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATA 456 VSLPWS +G++ LFV AVC+ILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATA Sbjct: 362 VSLPWSGAAGSVALFVTAVCLILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATA 421 Query: 457 GILGPVVVNYMREYQLSLGMPKNEVYNTTMYILAGMLVLGLICNLLIRPVAAKHFMTPEE 516 GILGPVVVNYMREYQ+SLGMP+ VYNTTMYILAG LV+GL+CNL+I+P+A KHFMTPEE Sbjct: 422 GILGPVVVNYMREYQISLGMPRESVYNTTMYILAGFLVVGLLCNLMIKPIAEKHFMTPEE 481 Query: 517 LAREKQLAHEKSAADAAVTAGSGDMSQIGSGGNPLFIGLAWAAVGIPLIWGITLVLQKSA 576 LAREK+LAHE+++A+ VT + DM++IGSGG+PL + L+WAAV IPL+WGI++ LQKSA Sbjct: 482 LAREKKLAHEQASANPDVTVSAEDMARIGSGGSPLVLWLSWAAVVIPLVWGISITLQKSA 541 Query: 577 VLFR 580 VLF+ Sbjct: 542 VLFK 545 >gb|AEL07508.1| integral membrane transporter [Xanthomonas campestris pv. raphani 756C] Length = 559 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 414/543 (76%), Positives = 467/543 (86%), Gaps = 1/543 (0%) Query: 37 FLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGADIGF 96 L+KE VA+PGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALG+T IAC AD+G Sbjct: 17 LLSKERIVARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGITESIACPADMGL 76 Query: 97 FAQVFSSTCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLLI 156 FA++ ++TCDWKIS L WMYT+FFVLLG SAA+WGGWLE AGPRKAGVV+A+CWCGGL+I Sbjct: 77 FARMVATTCDWKISELQWMYTLFFVLLGCSAAIWGGWLERAGPRKAGVVSALCWCGGLVI 136 Query: 157 SALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAL 216 SA G+ HQIW++WLGSGVIGG+GLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGA+ Sbjct: 137 SAAGIHFHQIWMLWLGSGVIGGIGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAM 196 Query: 217 VGTPLADALMKKFASPTSVGVWETFVVMAVIYFVFMMAGAFGYRVPPTGWKPAGWTPPVA 276 +G+PLADALM+ FA+PTSVGV ETF+VMA +YFVFMMAGAFGYRVPP+GW PAGWT PVA Sbjct: 197 IGSPLADALMRHFATPTSVGVMETFLVMAALYFVFMMAGAFGYRVPPSGWTPAGWTAPVA 256 Query: 277 KSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGVD 336 ++A MIT NHVHV KVWGIPQFWL+W VLCLNVSAGIGVIG++SPMLQEVFGG+L+GVD Sbjct: 257 SNNA-MITANHVHVKKVWGIPQFWLLWGVLCLNVSAGIGVIGMSSPMLQEVFGGRLIGVD 315 Query: 337 IGFNDLSVEQKAGIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLY 396 GF L Q A IAA+AAGFTGL+SLFNIGGRF WAS SD GRK TY +FF+LG LY Sbjct: 316 AGFGSLDAAQLASIAAIAAGFTGLLSLFNIGGRFFWASMSDKLGRKNTYTLFFLLGICLY 375 Query: 397 VSLPWSAKSGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATA 456 + P + G I LFVG CIILSMYGGGFAT+PAYLADLFGTQMVGAIHGRLLTAWATA Sbjct: 376 AAAPSAGGVGGIALFVGIFCIILSMYGGGFATIPAYLADLFGTQMVGAIHGRLLTAWATA 435 Query: 457 GILGPVVVNYMREYQLSLGMPKNEVYNTTMYILAGMLVLGLICNLLIRPVAAKHFMTPEE 516 GILGPVVV YMREYQL+ G P ++VYNTTMYILAGMLVLGLICNLL+RPVAA+HFMTP+E Sbjct: 436 GILGPVVVGYMREYQLAHGSPPSQVYNTTMYILAGMLVLGLICNLLVRPVAARHFMTPDE 495 Query: 517 LAREKQLAHEKSAADAAVTAGSGDMSQIGSGGNPLFIGLAWAAVGIPLIWGITLVLQKSA 576 LAREKQLAHEK DM++IG GGNP+ + AW AVGIP+ +GI + LQK+ Sbjct: 496 LAREKQLAHEKVDRSGQAVLAPEDMARIGHGGNPVLVAFAWLAVGIPMAFGIWVTLQKAF 555 Query: 577 VLF 579 VLF Sbjct: 556 VLF 558 >ref|NP_637710.1| integral membrane transporter [Xanthomonas campestris pv. campestris str. ATCC 33913] ref|YP_242843.1| integral membrane transporter [Xanthomonas campestris pv. campestris str. 8004] ref|YP_001903222.1| Major facilitator superfamily protein, probable [Xanthomonas campestris pv. campestris str. B100] gb|AAM41634.1| integral membrane transporter [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAY48823.1| integral membrane transporter [Xanthomonas campestris pv. campestris str. 8004] emb|CAP51168.1| Major facilitator superfamily protein, probable [Xanthomonas campestris pv. campestris] Length = 559 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 413/543 (76%), Positives = 466/543 (85%), Gaps = 1/543 (0%) Query: 37 FLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGADIGF 96 L+KE VA+PGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALG+T IAC AD+G Sbjct: 17 LLSKERIVARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGITESIACPADMGL 76 Query: 97 FAQVFSSTCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLLI 156 FA++ ++TCDWKIS L WMYT+FFVLLG SAA+WGGWLE AGPRKAGVV+A+CWCGGL+I Sbjct: 77 FARMVATTCDWKISELQWMYTLFFVLLGCSAAIWGGWLERAGPRKAGVVSALCWCGGLVI 136 Query: 157 SALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAL 216 SA G+ HQIW++WLGSGVIGG+GLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGA+ Sbjct: 137 SAAGIHFHQIWMLWLGSGVIGGIGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAM 196 Query: 217 VGTPLADALMKKFASPTSVGVWETFVVMAVIYFVFMMAGAFGYRVPPTGWKPAGWTPPVA 276 +G+PLADALM+ FA+PTSVGV ETF+VMA +YFVFMMAGAFGYRVPP+GW PAGWT PVA Sbjct: 197 IGSPLADALMRHFATPTSVGVMETFLVMAALYFVFMMAGAFGYRVPPSGWTPAGWTAPVA 256 Query: 277 KSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGVD 336 ++A MIT NHVHV KVWGIPQFWL+W VLCLNVSAGIGVIG++SPMLQEVFGG+L+GVD Sbjct: 257 SNNA-MITANHVHVKKVWGIPQFWLLWGVLCLNVSAGIGVIGMSSPMLQEVFGGRLIGVD 315 Query: 337 IGFNDLSVEQKAGIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLY 396 GF L Q A IAA+AAGFTGL+SLFNIGGRF WAS SD GRK TY +FF+LG LY Sbjct: 316 AGFGSLDAAQLASIAAIAAGFTGLLSLFNIGGRFFWASMSDKLGRKNTYTLFFLLGICLY 375 Query: 397 VSLPWSAKSGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATA 456 + P + G I LFVG CIILSMYGGGFAT+PAYLADLFGTQMVGAIHGRLLTAWATA Sbjct: 376 AAAPSAGGVGGIALFVGIFCIILSMYGGGFATIPAYLADLFGTQMVGAIHGRLLTAWATA 435 Query: 457 GILGPVVVNYMREYQLSLGMPKNEVYNTTMYILAGMLVLGLICNLLIRPVAAKHFMTPEE 516 GILGPVVV YMREYQL+ G P ++VYNTTMYILAGMLVLGLICNLL+RPVAA+HFMTP+E Sbjct: 436 GILGPVVVGYMREYQLAHGSPPSQVYNTTMYILAGMLVLGLICNLLVRPVAARHFMTPDE 495 Query: 517 LAREKQLAHEKSAADAAVTAGSGDMSQIGSGGNPLFIGLAWAAVGIPLIWGITLVLQKSA 576 LAREKQLAHEK DM++IG GGNP + AW AVG+P+ +GI + LQK+ Sbjct: 496 LAREKQLAHEKVDRSGQAVLAPEDMARIGHGGNPALVAFAWLAVGVPMAFGIWVTLQKAF 555 Query: 577 VLF 579 VLF Sbjct: 556 VLF 558 >ref|ZP_08177114.1| Major Facilitator Superfamily transporter [Xanthomonas vesicatoria ATCC 35937] gb|EGD10711.1| Major Facilitator Superfamily transporter [Xanthomonas vesicatoria ATCC 35937] Length = 559 Score = 746 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 416/543 (76%), Positives = 466/543 (85%), Gaps = 1/543 (0%) Query: 37 FLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGADIGF 96 L+KE VA+PGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALG+T IAC AD+G Sbjct: 17 LLSKERIVARPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGITEAIACPADMGL 76 Query: 97 FAQVFSSTCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLLI 156 FA++ +STCDWKIS L WMYT+FFVLLG SAA+WGGWLE AGPRKAGVV+A+CWCGGL+I Sbjct: 77 FARMVASTCDWKISELQWMYTLFFVLLGCSAAIWGGWLERAGPRKAGVVSALCWCGGLVI 136 Query: 157 SALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAL 216 SA G+ HQIW++WLGSGVIGG+GLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGA+ Sbjct: 137 SAAGIHFHQIWMLWLGSGVIGGIGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGAM 196 Query: 217 VGTPLADALMKKFASPTSVGVWETFVVMAVIYFVFMMAGAFGYRVPPTGWKPAGWTPPVA 276 +G+PLADALM+ FA+PTSVGV ETF+VMA +YFVFMMAGAFGYRVPP+GW PAGWT PVA Sbjct: 197 IGSPLADALMRHFATPTSVGVMETFLVMAALYFVFMMAGAFGYRVPPSGWTPAGWTAPVA 256 Query: 277 KSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGVD 336 ++A MIT NHVHV KVWGIPQFWL+W VLCLNVSAGIGVIG++SPMLQEVFGG+L+G+D Sbjct: 257 SNNA-MITANHVHVKKVWGIPQFWLLWGVLCLNVSAGIGVIGMSSPMLQEVFGGRLIGMD 315 Query: 337 IGFNDLSVEQKAGIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLY 396 IGF L Q A IAA+AAGFTGL+SLFNIGGRF WAS SD GRK TY +FFVLG LY Sbjct: 316 IGFGSLDPAQLASIAAIAAGFTGLLSLFNIGGRFFWASMSDKLGRKNTYTLFFVLGICLY 375 Query: 397 VSLPWSAKSGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATA 456 + P + G I LFVG CIILSMYGGGFAT+PAYLADLFGTQMVGAIHGRLLTAWATA Sbjct: 376 AAAPSAGGVGGIALFVGIFCIILSMYGGGFATIPAYLADLFGTQMVGAIHGRLLTAWATA 435 Query: 457 GILGPVVVNYMREYQLSLGMPKNEVYNTTMYILAGMLVLGLICNLLIRPVAAKHFMTPEE 516 GILGPVVV YMREYQL+ G P ++VYNTTMYILAGMLVLGLICNLL+RPVAA+HFMTP+E Sbjct: 436 GILGPVVVGYMREYQLAHGSPPSQVYNTTMYILAGMLVLGLICNLLVRPVAARHFMTPDE 495 Query: 517 LAREKQLAHEKSAADAAVTAGSGDMSQIGSGGNPLFIGLAWAAVGIPLIWGITLVLQKSA 576 LAREKQLAHEK MS+IG GGNP + AW AVGIP+ +GI + LQK+ Sbjct: 496 LAREKQLAHEKVDRSGHAVLPPDQMSRIGHGGNPALVAFAWLAVGIPMAFGIWVTLQKAF 555 Query: 577 VLF 579 VLF Sbjct: 556 VLF 558