BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2861.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774895.1| LysR family transcription regulator protein ... 294 2e-77 ref|YP_434309.1| transcriptional regulator [Hahella chejuensis K... 195 7e-48 ref|NP_435433.1| Transcriptional regulator, LysR family [Sinorhi... 176 4e-42 gb|AEG07621.1| transcriptional regulator, LysR family [Sinorhizo... 176 5e-42 ref|ZP_04681154.1| Transcriptional regulator, LysR family [Ochro... 170 3e-40 >ref|YP_003774895.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62987.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 282 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 208/307 (67%), Positives = 233/307 (75%), Gaps = 27/307 (8%) Query: 21 LAGMDARLLRLLDAVLDEVHLARAAARVGLPLPAAASALERCRQLLRDPLLEDGGTQMRL 80 LA +D RLL+LLDAVLDE HLARAAARVG+ LPAAASALERCRQLLR+PL Sbjct: 3 LAALDTRLLQLLDAVLDETHLARAAARVGMSLPAAASALERCRQLLREPL---------- 52 Query: 81 TATAQALRESVRQMLAGDAQAQTASPAQQVPLQAAVAQRVRILMPDYPAQVVAHALYQEL 140 RQ LA A ++ A P QRVRILMPDYPAQVVA LY+EL Sbjct: 53 -----------RQALAERHAASASAGASAQP------QRVRILMPDYPAQVVAQPLYREL 95 Query: 141 AAELPSLDLEFQTWLGDADAAARLERGQTDLVLGATRPTGQLRGREVLQERCVAVMRRDH 200 A +L LEFQ W GDA AAA LE G T+LVLGA P LR R+VLQERCVAVMRRDH Sbjct: 96 ADSAGALTLEFQPWQGDAHAAASLESGHTELVLGAITPNASLRVRDVLQERCVAVMRRDH 155 Query: 201 PAAHALTLSRWLSYPHLQIACHDTLNRMIDEQIAMQGLRRRVGMVIPNFLMAPALLQGSD 260 PAA LTL++WL++P L+I+CHDTLNRM+DEQ+A QG R R+GMVIPNFLMAPALL GSD Sbjct: 156 PAAQGLTLAKWLAHPQLRISCHDTLNRMLDEQLATQGHRARIGMVIPNFLMAPALLHGSD 215 Query: 261 LIAVMPMHCVPAATAAHPVALTCLRPPLPLEAPPLRLLQHRRHAEDASVALVAQVLERIV 320 LIA+MPMHCVPAA+AAHPVAL+CLRPPLPL+APPLRLL HRRHAE A+V+ VAQ LERIV Sbjct: 216 LIALMPMHCVPAASAAHPVALSCLRPPLPLDAPPLRLLHHRRHAEHAAVSQVAQALERIV 275 Query: 321 RQRFDGR 327 RQ DGR Sbjct: 276 RQHLDGR 282 >ref|YP_434309.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gb|ABC29884.1| Transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 291 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 124/300 (41%), Positives = 172/300 (57%), Gaps = 15/300 (5%) Query: 21 LAGMDARLLRLLDAVLDEVHLARAAARVGLPLPAAASALERCRQLLRDPLLEDGGTQMRL 80 L G+D LL +LDA+LDE H+ RAA R+ L PA +SALERCR L DPLL G +MRL Sbjct: 3 LRGVDLNLLVILDALLDERHVTRAAKRLHLSQPATSSALERCRHLFGDPLLIRGRGEMRL 62 Query: 81 TATAQALRESVRQMLAGDAQAQTASPAQQVPLQAAVAQRVRILMPDYPAQVVAHALYQEL 140 +A A++LRE ++ +L QA+ PL A + Q +RILM D+P + L+Q L Sbjct: 63 SAKAESLREPIKALL---TQAERVINQADTPL-AELRQTIRILMADFPVSALLGPLHQRL 118 Query: 141 AAELPSLDLEFQTWLGDADAAARLERGQTDLVLGATRPTG-QLRGREVLQERCVAVMRRD 199 P+LDL Q W G A +L +G+ DL + G R E+L E +MR+D Sbjct: 119 ITSAPNLDLIVQPWHGAKSALEQLAKGEADLAVSVFPNVGASFRCVELLYEDYCVLMRKD 178 Query: 200 HPAAHALTLSRWLSYPHLQIACHDTLNRMIDEQIAMQGLRRRVGMVIPNFLMAPALLQGS 259 HPAA L +WL+YPH+ ++ + +D+ + +GLRRRVG+V+P F MAP Sbjct: 179 HPAAQNFNLQQWLAYPHVLVSGRGDADSPVDQTLQARGLRRRVGLVVPYFQMAP------ 232 Query: 260 DLIAVMPMHCVPAATAAHPVALTCLRPPLPLEAPPLRLLQHRRHAEDASVALVAQVLERI 319 DLIA++P HCVP T T PP+P+E PL L H R D +V+ V +V+ + Sbjct: 233 DLIALLPTHCVPQDTT----KFTVFPPPIPVEGFPLHLAWHVRKHGDQAVSHVVEVIREV 288 >ref|NP_435433.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] gb|AAK64845.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti 1021] Length = 295 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 118/285 (41%), Positives = 167/285 (58%), Gaps = 10/285 (3%) Query: 38 EVHLARAAARVGLPLPAAASALERCRQLLRDPLLEDGGTQMRLTATAQALRESVRQMLAG 97 E H++RAA R+GL PAA++AL+RCR L RD LLE G MRLT+ A+ALR ++ +LA Sbjct: 20 EAHVSRAADRLGLSQPAASAALQRCRHLFRDELLERGRGTMRLTSRAEALRAPLKSLLA- 78 Query: 98 DAQAQTASPAQQVPLQAAVAQRVRILMPDYPAQVVAHALYQELAAELPSLDLEFQTWLGD 157 + + P + +PL + Q +RI M DYPA V L +EL P +DL Q+W G Sbjct: 79 -SMMELIGPPE-IPL-TEIRQVLRITMADYPALFVIAQLQRELQPSAPGIDLVIQSWHGG 135 Query: 158 ADAAARLERGQTDLVLGA-TRPTGQLRGREVLQERCVAVMRRDHPAAHALTLSRWLSYPH 216 A + L G DL + T P L E+L E V VMR HPAA A L+ WLSYPH Sbjct: 136 DAARSALVDGTADLAVSVFTAPDDDLHREELLTEHYVVVMRAGHPAAEAFDLNAWLSYPH 195 Query: 217 LQIACHDTLNRMIDEQIAMQGLRRRVGMVIPNFLMAPALLQGSDLIAVMPMHCVPAATAA 276 + ++ +D +++ GL RRVG+V+PNF M P+LLQ SD+IA++P P+ Sbjct: 196 ILVSGRGDTTTPLDAELSRFGLSRRVGLVVPNFQMVPSLLQDSDMIAMLPSRATPSGG-- 253 Query: 277 HPVALTCLRPPLPLEAPPLRLLQHRRHAEDASVALVAQVLERIVR 321 +L PP+P+ L + HRR A+DA++ VA++L ++R Sbjct: 254 ---SLVSFLPPIPVPGFQLHMAWHRRRAKDAALQHVARILGALLR 295 >gb|AEG07621.1| transcriptional regulator, LysR family [Sinorhizobium meliloti BL225C] gb|AEH81455.1| Transcriptional regulator, LysR family [Sinorhizobium meliloti SM11] Length = 295 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 118/285 (41%), Positives = 167/285 (58%), Gaps = 10/285 (3%) Query: 38 EVHLARAAARVGLPLPAAASALERCRQLLRDPLLEDGGTQMRLTATAQALRESVRQMLAG 97 E H++RAA R+GL PAA++AL+RCR L RD LLE G MRLT+ A+ALR ++ +LA Sbjct: 20 EAHVSRAADRLGLSQPAASAALQRCRHLFRDELLERGRGTMRLTSRAEALRAPLKSLLA- 78 Query: 98 DAQAQTASPAQQVPLQAAVAQRVRILMPDYPAQVVAHALYQELAAELPSLDLEFQTWLGD 157 + + P + +PL + Q +RI M DYPA V L +EL P +DL Q+W G Sbjct: 79 -SMMELIDPPE-IPL-TEIRQVLRITMADYPALFVIAQLQRELQPSAPGIDLVIQSWHGG 135 Query: 158 ADAAARLERGQTDLVLGA-TRPTGQLRGREVLQERCVAVMRRDHPAAHALTLSRWLSYPH 216 A + L G DL + T P L E+L E V VMR HPAA A L+ WLSYPH Sbjct: 136 DAARSALVDGTADLAVSVFTAPDDDLHREELLTEHYVVVMRAGHPAAEAFDLNAWLSYPH 195 Query: 217 LQIACHDTLNRMIDEQIAMQGLRRRVGMVIPNFLMAPALLQGSDLIAVMPMHCVPAATAA 276 + ++ +D +++ GL RRVG+V+PNF M P+LLQ SD+IA++P P+ Sbjct: 196 ILVSGRGDTTTPLDAELSRFGLSRRVGLVVPNFQMVPSLLQDSDMIAMLPSRATPSGG-- 253 Query: 277 HPVALTCLRPPLPLEAPPLRLLQHRRHAEDASVALVAQVLERIVR 321 +L PP+P+ L + HRR A+DA++ VA++L ++R Sbjct: 254 ---SLVSFLPPIPVPGFQLHMAWHRRRAKDAALQHVARILGALLR 295 >ref|ZP_04681154.1| Transcriptional regulator, LysR family [Ochrobactrum intermedium LMG 3301] gb|EEQ96660.1| Transcriptional regulator, LysR family [Ochrobactrum intermedium LMG 3301] Length = 306 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 110/290 (37%), Positives = 159/290 (54%), Gaps = 9/290 (3%) Query: 38 EVHLARAAARVGLPLPAAASALERCRQLLRDPLLEDGGTQMRLTATAQALRESVRQMLAG 97 E H++RAA R+ L PA ++AL+RCR L D LLE MR T A+ LR ++ +LAG Sbjct: 20 EAHVSRAADRLNLTQPAVSNALQRCRALFNDQLLERTRGTMRRTPKAETLRAPLKTLLAG 79 Query: 98 DAQAQTASPAQQVPLQAAVAQRVRILMPDYPAQVVAHALYQELAAELPSLDLEFQTWLGD 157 Q V LQ Q +R+ M DYPA V L + LA P +++ Q W G Sbjct: 80 VIDLVDPPEVQLVSLQ----QTIRVCMADYPAIFVIGPLLKTLAHTAPGINIIVQPWHGA 135 Query: 158 ADAAARLERGQTDLVLGA-TRPTGQLRGREVLQERCVAVMRRDHPAAHALTLSRWLSYPH 216 A L G++DL L +L+ R +L+E + MRRDH AA+A +L WL YPH Sbjct: 136 EAARVALVTGESDLALSVFPDADKELQRRLLLEENYIIAMRRDHAAANAFSLESWLEYPH 195 Query: 217 LQIACHDTLNRMIDEQIAMQGLRRRVGMVIPNFLMAPALLQGSDLIAVMPMHCVPAATAA 276 + ++ + +D +A +GL RRVG+V+PNF M P LL +D+IA++P C+P T+ Sbjct: 196 ILVSGRGDDSSPVDRTLAERGLSRRVGVVVPNFDMVPELLANTDMIAMLPSRCMPEDTS- 254 Query: 277 HPVALTCLRPPLPLEAPPLRLLQHRRHAEDASVALVAQVLERIVRQRFDG 326 +L PP+P+ PL + H+R ED V V + L RI+ ++ G Sbjct: 255 ---SLAAFPPPIPVAGFPLHIAWHKRRQEDRGVQYVIEQLVRIMMEKRTG 301