BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2860.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774894.1| LysR family transcription regulator protein ... 467 e-130 ref|YP_935361.1| LysR family transcriptional regulator [Azoarcus... 275 4e-72 ref|YP_001861877.1| LysR family transcriptional regulator [Burkh... 268 5e-70 ref|YP_970444.1| LysR family transcriptional regulator [Acidovor... 263 2e-68 ref|YP_004235537.1| LysR family transcriptional regulator [Acido... 262 3e-68 >ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62986.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 467 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 230/242 (95%), Positives = 234/242 (96%) Query: 1 MTEDGGNVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE 60 MTE+GGNVHEWAR+ILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE Sbjct: 61 MTEEGGNVHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE 120 Query: 61 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGA 120 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHG Sbjct: 121 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGL 180 Query: 121 PADLAALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGI 180 PADLAALRQHQCLVIRERNQSFGIWRMMGPKG ETVKVSG LASNHGEIIHQWAVDGHGI Sbjct: 181 PADLAALRQHQCLVIRERNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGHGI 240 Query: 181 ILRSIWDVADSLKRGRLVRVLPQYFQEADLCAVYPVQLKNSAKVRECVRFLQKHLDVTAS 240 ILRS WDVADSLKRGRLVRVLPQY+QEADLCAVYP+QLKNSAKVRECVRFLQKHLDV Sbjct: 241 ILRSAWDVADSLKRGRLVRVLPQYYQEADLCAVYPLQLKNSAKVRECVRFLQKHLDVAVL 300 Query: 241 SA 242 A Sbjct: 301 PA 302 >ref|YP_935361.1| LysR family transcriptional regulator [Azoarcus sp. BH72] emb|CAL96475.1| putative transcriptional regulator, LysR family [Azoarcus sp. BH72] Length = 306 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 133/235 (56%), Positives = 175/235 (74%) Query: 1 MTEDGGNVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE 60 +TE G V +WA++I+DDV+++ E VS+ K P GLL++ TS G GR V P L+ A Sbjct: 61 LTEQGEVVLQWAQRIVDDVDRLAEAVSAEKMAPAGLLRVCTSSGFGRNRVGPALAALAER 120 Query: 61 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGA 120 +P ++IQLEL+DR +DL+ EG LDIRVGA EP L S+RI ++RVLCA+P Y+ +HG Sbjct: 121 YPAVEIQLELLDRPVDLIGEGFQLDIRVGAVREPDLISRRIARNERVLCAAPDYVARHGT 180 Query: 121 PADLAALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGI 180 PADLA L +H+C+VIRER+Q FG W + GP G ETVKV G L++N+GE++ QWA+ GHGI Sbjct: 181 PADLAELARHRCIVIRERDQDFGRWTLTGPDGPETVKVGGPLSANNGEVVRQWALAGHGI 240 Query: 181 ILRSIWDVADSLKRGRLVRVLPQYFQEADLCAVYPVQLKNSAKVRECVRFLQKHL 235 ILRS WDV +L RG LV+VLP Y QEAD+ AVYP +L +SAKVR CV FL++ L Sbjct: 241 ILRSRWDVGPALARGELVQVLPAYRQEADVWAVYPSRLSSSAKVRVCVEFLEEWL 295 >ref|YP_001861877.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC74831.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 318 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 130/235 (55%), Positives = 172/235 (73%) Query: 1 MTEDGGNVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE 60 +T DG +WA+KILDDV+ M + + K PRG+L+ISTS LGR+ VSP+LS Sbjct: 69 VTSDGEAAFQWAQKILDDVQGMADAFAGLKSDPRGVLRISTSLRLGREHVSPILSLLRKR 128 Query: 61 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGA 120 +P L+I LEL+DR++DLV EG D+DIRVG EPHL + +I+ S R+LCASP YLK+ G Sbjct: 129 YPGLEIWLELLDRRVDLVGEGFDIDIRVGNIQEPHLIAHKIVGSARILCASPEYLKRAGT 188 Query: 121 PADLAALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGI 180 P LA L QH CL+ RER+Q FG WR+ GP G+++VKV+G +ASNH +I+ QWA+DG GI Sbjct: 189 PRTLADLAQHDCLLFRERDQRFGAWRLTGPDGEKSVKVTGPIASNHSDIVQQWALDGDGI 248 Query: 181 ILRSIWDVADSLKRGRLVRVLPQYFQEADLCAVYPVQLKNSAKVRECVRFLQKHL 235 I+ S+WDVA SL+ G LVRVLPQ+ Q AD+ AV + +SAK+R CV FL++HL Sbjct: 249 IMVSVWDVASSLESGALVRVLPQHHQPADVWAVTSARASSSAKLRVCVDFLKQHL 303 >ref|YP_970444.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gb|ABM32670.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 342 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 123/235 (52%), Positives = 167/235 (71%) Query: 1 MTEDGGNVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE 60 +TE+G V WA++ILDD +Q+++ V+ +R PRGLL++S SFG GR++V+P +SR Sbjct: 98 VTEEGERVFHWAQRILDDWDQLLQEVAVTRREPRGLLRVSCSFGFGRRIVAPAVSRLVER 157 Query: 61 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGA 120 HP L+++LE+ DR +D+ EG DLDIRVG PHL ++R+ + RVLCA+P YL + G Sbjct: 158 HPGLQVRLEVFDRLVDVAGEGFDLDIRVGDEIAPHLIARRLAGNHRVLCAAPGYLARKGT 217 Query: 121 PADLAALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGI 180 P + L H CLVI+ER+ FG+WR+ TVKV G L++NHGE+ QWAVDG GI Sbjct: 218 PRAVDDLAGHDCLVIKERDHPFGVWRLRSGAADRTVKVRGSLSANHGEMAVQWAVDGRGI 277 Query: 181 ILRSIWDVADSLKRGRLVRVLPQYFQEADLCAVYPVQLKNSAKVRECVRFLQKHL 235 +LRS+WDV L GRLVRVLP++ QEA++ AVYP +L+ SAKVR CV FLQ H Sbjct: 278 VLRSLWDVGPDLATGRLVRVLPEWQQEANVWAVYPTRLERSAKVRVCVEFLQAHF 332 >ref|YP_004235537.1| LysR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46970.1| transcriptional regulator, LysR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 305 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 124/235 (52%), Positives = 168/235 (71%) Query: 1 MTEDGGNVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE 60 +TE+G V WA++ILDD +Q+++ V+ +R PRGLL++S SFG GR++V+P +SR Sbjct: 61 VTEEGERVFHWAQRILDDWDQLLQEVAVTRREPRGLLRLSCSFGFGRRIVAPAVSRLVER 120 Query: 61 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGA 120 HP L+++LE+ DR +D+ EG DLDIRVG PHL ++R+ + RVLCA+PAYL + G Sbjct: 121 HPGLQVRLEVFDRLVDVAGEGFDLDIRVGDEIAPHLIARRLAGNHRVLCAAPAYLARKGM 180 Query: 121 PADLAALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGI 180 P + L H CLVI+ER+ FG+WR+ TVKV G L++NHGE+ QWAVDG GI Sbjct: 181 PRAVDDLASHDCLVIKERDHPFGVWRLRSGAADRTVKVRGPLSANHGEMAVQWAVDGRGI 240 Query: 181 ILRSIWDVADSLKRGRLVRVLPQYFQEADLCAVYPVQLKNSAKVRECVRFLQKHL 235 +LRS+WDV L GRLVRVLP++ QEA++ AVYP +L+ SAKVR CV FLQ H Sbjct: 241 VLRSLWDVGPDLAAGRLVRVLPEWQQEANVWAVYPTRLERSAKVRVCVEFLQAHF 295