BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2856.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774890.1| hypothetical protein Hsero_1467 [Herbaspiril...   234   4e-60
ref|YP_841907.1| hypothetical protein H16_B2395 [Ralstonia eutro...    57   1e-06

>ref|YP_003774890.1| hypothetical protein Hsero_1467 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62982.1| hypothetical protein Hsero_1467 [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  234 bits (596), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 115/131 (87%), Positives = 120/131 (91%)

Query: 16  LLLATALAAACLPAHAEWMPLGENNIGSFFIDKGSIVNTRSVRQAQILLNWNRPQLLMGQ 75
           +LL   LA   L AHAEW+PLGEN+IGSFFIDK SIV TRSVRQAQILLNW+RPQLLMGQ
Sbjct: 1   MLLGAVLATTGLTAHAEWLPLGENSIGSFFIDKSSIVTTRSVRQAQILLNWHRPQLLMGQ 60

Query: 76  GSKTYYLSEISTAYFDCSARQLGFGSRKMYAQADGKGQLLLAPQLAYSDVKLQDPIPGST 135
           GSKTYYLSEISTAYFDC  RQLGFGSRKMYAQADG+GQLLLAPQLAYSDVKLQDPIPGST
Sbjct: 61  GSKTYYLSEISTAYFDCGNRQLGFGSRKMYAQADGRGQLLLAPQLAYSDVKLQDPIPGST 120

Query: 136 GERAIEAVCGK 146
           GERAIEAVCGK
Sbjct: 121 GERAIEAVCGK 131


>ref|YP_841907.1| hypothetical protein H16_B2395 [Ralstonia eutropha H16]
 emb|CAJ97177.1| hypothetical membrane associated protein [Ralstonia eutropha H16]
          Length = 137

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 6/137 (4%)

Query: 13  RLSLLLATALAAACLPAHAEWMPLG---ENNIGSFFIDKGSIVNTRSVRQAQILLNWNRP 69
           +L  L+A A+ +  + A A+W  +G   EN +   ++D  SI +++ +++A +  ++  P
Sbjct: 4   KLFPLVAVAMLSTNVMA-AKWEAIGVGGENTL--LYVDATSISSSKGLKKAWLRYSYTTP 60

Query: 70  QLLMGQGSKTYYLSEISTAYFDCSARQLGFGSRKMYAQADGKGQLLLAPQLAYSDVKLQD 129
           Q          Y S ++  +FDC+ R+     + +Y   DG G++L    +   +  L D
Sbjct: 61  QKGDYVTKFKDYRSVLTMNHFDCAGRRSAVSKQVIYEGDDGTGEVLGTNSIKNVENALDD 120

Query: 130 PIPGSTGERAIEAVCGK 146
             PG+ GE A+  VCGK
Sbjct: 121 VTPGTLGETALIRVCGK 137