BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2855.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774884.1| LysR family transcription regulator protein ... 470 e-130 ref|ZP_08868495.1| LysR family transcriptional regulator [Azospi... 265 5e-69 ref|YP_001563570.1| LysR family transcriptional regulator [Delft... 257 2e-66 ref|YP_004489446.1| LysR family transcriptional regulator [Delft... 253 2e-65 ref|YP_003277939.1| LysR family transcriptional regulator [Comam... 245 5e-63 >ref|YP_003774884.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62976.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 278/302 (92%), Positives = 291/302 (96%) Query: 1 MRINIETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVS 60 MRINIETAELQAF+AVARQSSFRAAAEGLFIT PALSRRIENLEQALQERLFDRTTRRVS Sbjct: 1 MRINIETAELQAFIAVARQSSFRAAAEGLFITQPALSRRIENLEQALQERLFDRTTRRVS 60 Query: 61 LTPAGELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYART 120 LTPAGELFLVHAQAVM+ELELAV+SVEQ MA RREHVTVACVPSVANNLLP VLK YAR+ Sbjct: 61 LTPAGELFLVHAQAVMEELELAVKSVEQRMAQRREHVTVACVPSVANNLLPQVLKRYARS 120 Query: 121 HPNVRVRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLA 180 H NVRVRIIDE+AA+VLESVRKGEADFGVNFIGAQEAEIDF ELTRERYLAVMP HHPLA Sbjct: 121 HANVRVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFAELTRERYLAVMPTHHPLA 180 Query: 181 AQSSLHWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLG 240 A +SL+WKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLG Sbjct: 181 AHASLNWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLG 240 Query: 241 VALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQALREAMASKP 300 VALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQALR+A++++ Sbjct: 241 VALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQALRDAISTRS 300 Query: 301 RK 302 K Sbjct: 301 GK 302 >ref|ZP_08868495.1| LysR family transcriptional regulator [Azospirillum amazonense Y2] gb|EGY01905.1| LysR family transcriptional regulator [Azospirillum amazonense Y2] Length = 298 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 152/295 (51%), Positives = 210/295 (71%), Gaps = 1/295 (0%) Query: 1 MRINIETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVS 60 MR++ E E+ AF+ VA+ +FRAAA+ L ++ PALSRR+E LE AL+ RL +RTTR+V Sbjct: 1 MRLDFEFGEVLAFVTVAQTLNFRAAADRLHLSQPALSRRVEKLEAALEMRLLERTTRKVE 60 Query: 61 LTPAGELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYART 120 LT AG FL HA +++ELELA S+ ++ VTVACVPSVAN++LP +L YA+T Sbjct: 61 LTEAGRQFLNHAVVILEELELARASMVARAGRAKQLVTVACVPSVANHVLPDILHLYAQT 120 Query: 121 HPNVRVRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLA 180 HP VR+RIIDE+A +VL++V +GEAD G++F+GAQ AE+DF + E Y+ + HPLA Sbjct: 121 HPGVRIRIIDESAGKVLDAVMEGEADIGISFLGAQNAEVDFTPIRSEPYVLAVRRDHPLA 180 Query: 181 AQSSLHWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLG 240 A ++ W SL E+L++VS +SGNR LI+N + +P+RP I YE NHVAGA+ LV+AGLG Sbjct: 181 AAAATRWDSLEAERLIAVSLNSGNRILIENVLAGLPRRPTIHYEANHVAGALGLVSAGLG 240 Query: 241 VALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKG-RVLKPAAATLAQALRE 294 VA+LP LA+ N Y +V P+ P LSR +GL+T G R+ +PA+A LR+ Sbjct: 241 VAVLPGLALANNAYPALVGIPMRDPELSRTLGLVTRAGTRLSQPASALHDLILRK 295 >ref|YP_001563570.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX35185.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 310 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 144/295 (48%), Positives = 199/295 (67%), Gaps = 5/295 (1%) Query: 2 RINIETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVSL 61 RI + EL AF+ A ++SFR AAE LF++ PALSRR+E LE L RL +R+TRRV L Sbjct: 13 RIKFDMGELIAFVTTAEKASFRLAAEALFLSPPALSRRVERLESVLGARLLERSTRRVEL 72 Query: 62 TPAGELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYARTH 121 T G FL A+ + L+ AV+ V+ + RR VTVACVPSVA NLLP VLK +A Sbjct: 73 TEVGHEFLQEARRALAGLDEAVQRVDDQLKLRRGRVTVACVPSVATNLLPPVLKTFAVEQ 132 Query: 122 PNVRVRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLAA 181 P+V+V +IDE+A +V+E+V +G+ADFG++F G+QE + F LTRERY+ MP H A Sbjct: 133 PDVQVHVIDESAQQVVEAVLRGDADFGLSFTGSQEPSLRFEALTRERYVLAMPRSHAWAG 192 Query: 182 QSSLHWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLGV 241 +S + W LAG++LVSVS SGNR L+D + +P++PV +E NHV GA++LV AGLG+ Sbjct: 193 RSQVEWAELAGKRLVSVSHKSGNRLLLDQVMAGLPEQPVAWHECNHVTGALALVEAGLGL 252 Query: 242 ALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQALREAM 296 A +P+LA+R + + P+T P + R +GL+ + RVL P +AQALRE + Sbjct: 253 AAVPQLALRQ-DHAQVCGVPLTEPDVWRTLGLLQRRDRVLGP----VAQALRECL 302 >ref|YP_004489446.1| LysR family transcriptional regulator [Delftia sp. Cs1-4] gb|AEF91091.1| transcriptional regulator, LysR family [Delftia sp. Cs1-4] Length = 300 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 145/295 (49%), Positives = 200/295 (67%), Gaps = 5/295 (1%) Query: 2 RINIETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVSL 61 RI + EL AF+ A ++SFR AAE LF++ PALSRR+E LE L RL +RTTRRV L Sbjct: 3 RIKFDMGELIAFVTTAEKASFRLAAEALFLSPPALSRRVERLESVLGARLLERTTRRVEL 62 Query: 62 TPAGELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYARTH 121 T G FL A+ + L+ AV+ V+ + RR VTVACVPSVA NLLP VLK +A Sbjct: 63 TEVGHEFLQEARRALAGLDEAVQRVDDQLKLRRGRVTVACVPSVATNLLPPVLKTFAVEQ 122 Query: 122 PNVRVRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLAA 181 P+V+V +IDE+A +V+E+V +G+ADFG++F G+QE + F LTRERY+ MP H A Sbjct: 123 PDVQVHVIDESAQQVVEAVLRGDADFGLSFTGSQEPSLRFEALTRERYVLAMPRSHAWAG 182 Query: 182 QSSLHWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLGV 241 +S + W LAG++LVSVS SGNR L+D + +P++PV +E NHV GA++LV AGLG+ Sbjct: 183 RSQVEWAELAGKRLVSVSHKSGNRLLLDQVMAGLPEQPVAWHECNHVTGALALVEAGLGL 242 Query: 242 ALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQALREAM 296 A +P+LA+R + + P+T+P + R +GL+ + RVL P +AQALRE + Sbjct: 243 AAVPQLALRQ-DHAQVCGVPLTAPDVWRTLGLLQRRDRVLGP----VAQALRECL 292 >ref|YP_003277939.1| LysR family transcriptional regulator [Comamonas testosteroni CNB-2] gb|ACY32643.1| transcriptional regulator, LysR family [Comamonas testosteroni CNB-2] Length = 299 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 141/291 (48%), Positives = 191/291 (65%), Gaps = 1/291 (0%) Query: 2 RINIETAELQAFLAVARQSSFRAAAEGLFITAPALSRRIENLEQALQERLFDRTTRRVSL 61 RI + AELQAF+A A SSFR AAE L ++APALSRR+E LE+AL +L +RTTR V L Sbjct: 3 RIKFDIAELQAFVATAENSSFRVAAERLCLSAPALSRRVERLEEALGAKLLERTTRHVQL 62 Query: 62 TPAGELFLVHAQAVMDELELAVRSVEQGMAHRREHVTVACVPSVANNLLPLVLKPYARTH 121 T G+ FL A+A ++ LE A + + RR VTVAC+PSVAN+LLP L+ +A + Sbjct: 63 TAIGQEFLTEARAALESLETAAQRISDQSLTRRGLVTVACIPSVANHLLPNALRSFADEY 122 Query: 122 PNVRVRIIDENAAEVLESVRKGEADFGVNFIGAQEAEIDFRELTRERYLAVMPAHHPLAA 181 P+V V +IDENA+ VL++V +G ADFG++F G+QE I F + RERY+ M H A Sbjct: 123 PDVHVHVIDENASHVLDAVVRGRADFGLSFTGSQEPGIHFETVARERYVLAMLRSHAWAC 182 Query: 182 QSSLHWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLGV 241 +S + W LAG +LVSVS S NR L+D + +P++P+ YE NHV GA++LV AGLG+ Sbjct: 183 RSEVAWSELAGVRLVSVSHQSSNRLLLDQVMAGLPEQPMAWYECNHVTGALALVEAGLGM 242 Query: 242 ALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQAL 292 A +P+LA+ K + P+ P L R +GLI + RVL P A +L L Sbjct: 243 AAIPQLALPECNPK-VCGVPLIEPQLWRTLGLIQKRERVLSPVAESLKNRL 292