BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2854.p (268 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774883.1| solute binding periplasmic protein [Herbaspi... 404 e-111 ref|ZP_08868496.1| extracellular solute-binding protein family 1... 286 2e-75 ref|YP_001772844.1| extracellular solute-binding protein [Methyl... 268 5e-70 ref|YP_002498015.1| family 1 extracellular solute-binding protei... 265 8e-69 emb|CCA80326.1| putative molybdate-binding periplasmic protein p... 256 2e-66 >ref|YP_003774883.1| solute binding periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62975.1| solute binding periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 224/253 (88%), Positives = 239/253 (94%) Query: 16 LQRSVLALALGAVTSLAAAADLHVVSSGGFAAAYKALAPAFEKKTGHKLISGWGPSMGET 75 LQRSVLAL +GA ++LAAA D+HVVSSGGFAAAYK LAP FEKKTGHKLISGWGPSMGET Sbjct: 10 LQRSVLALLIGATSALAAATDIHVVSSGGFAAAYKTLAPEFEKKTGHKLISGWGPSMGET 69 Query: 76 PQAIPNRLQRGEQIDVVIMVGDSLDKLVAEGKVSKSEHKLLALSRIGLAVKAGAPKPDIS 135 PQAIPNRLQRGE IDVVIMVGDSLDKLVA GKVSK+EHKLLALSRIGLAVKAGAP+PDIS Sbjct: 70 PQAIPNRLQRGEHIDVVIMVGDSLDKLVAAGKVSKTEHKLLALSRIGLAVKAGAPRPDIS 129 Query: 136 SIDAFKRTLLTAHSVVYSDSASGVFLSTKLFKRLGIDQQMAYKGRMIPAEPVGEVIARGD 195 ++DAFKRTLLTAHSVVYSDSASGVFLSTKLFKRLGIDQQMAYKGRMIPAEPVG+V+ARGD Sbjct: 130 NLDAFKRTLLTAHSVVYSDSASGVFLSTKLFKRLGIDQQMAYKGRMIPAEPVGQVVARGD 189 Query: 196 AEVGLQQISELKPVKGIDIIGPIPESAQQITPFSGGVVVGTHEPKAARELLDFLASPEAI 255 AE+GLQQISELKPVKGIDIIGPIPE AQQ+TPFS GVVVG HE +AA+EL+ FLASPEA Sbjct: 190 AEIGLQQISELKPVKGIDIIGPIPEEAQQLTPFSAGVVVGAHEAEAAKELVHFLASPEAQ 249 Query: 256 DAIKASGLDPAPR 268 AIKASGLDPAPR Sbjct: 250 AAIKASGLDPAPR 262 >ref|ZP_08868496.1| extracellular solute-binding protein family 1 [Azospirillum amazonense Y2] gb|EGY01906.1| extracellular solute-binding protein family 1 [Azospirillum amazonense Y2] Length = 256 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 156/232 (67%), Positives = 188/232 (81%) Query: 36 DLHVVSSGGFAAAYKALAPAFEKKTGHKLISGWGPSMGETPQAIPNRLQRGEQIDVVIMV 95 +LHV SSGGFAAAYKALAP FEK+TG+ L+S WGPSMG+TP+AIPNRL++ + IDVVIMV Sbjct: 21 ELHVASSGGFAAAYKALAPEFEKRTGNTLVSVWGPSMGDTPEAIPNRLRQHQDIDVVIMV 80 Query: 96 GDSLDKLVAEGKVSKSEHKLLALSRIGLAVKAGAPKPDISSIDAFKRTLLTAHSVVYSDS 155 GDSLD LV G+V +HK+LA+S+IGLAVKAGAP PDIS++ A K+ LL A SV YSDS Sbjct: 81 GDSLDTLVRAGQVMDLDHKVLAVSKIGLAVKAGAPHPDISTVAALKKVLLDARSVAYSDS 140 Query: 156 ASGVFLSTKLFKRLGIDQQMAYKGRMIPAEPVGEVIARGDAEVGLQQISELKPVKGIDII 215 ASGVFLST LFKRLGI M K RMIPAEPVG V+ARG+AE+G QQISEL P+ GIDI+ Sbjct: 141 ASGVFLSTVLFKRLGIADAMKDKARMIPAEPVGNVVARGEAEIGFQQISELLPLSGIDIV 200 Query: 216 GPIPESAQQITPFSGGVVVGTHEPKAARELLDFLASPEAIDAIKASGLDPAP 267 GP+P+ AQ++TPFS G+V GT E +AA +L+ FL+SP+A I SGL P P Sbjct: 201 GPLPDEAQKVTPFSIGIVAGTRETQAAEDLIAFLSSPDAASLITKSGLVPVP 252 >ref|YP_001772844.1| extracellular solute-binding protein [Methylobacterium sp. 4-46] gb|ACA20410.1| extracellular solute-binding protein family 1 [Methylobacterium sp. 4-46] Length = 263 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 151/255 (59%), Positives = 192/255 (75%) Query: 11 VRTSLLQRSVLALALGAVTSLAAAADLHVVSSGGFAAAYKALAPAFEKKTGHKLISGWGP 70 +R+ L R + + + A AA++ VVSSGGFAAAY+ALAP FE++TGH+L++ WGP Sbjct: 2 IRSKFLFRGLGLVLPLLLAGAALAAEVRVVSSGGFAAAYRALAPEFERRTGHRLVAEWGP 61 Query: 71 SMGETPQAIPNRLQRGEQIDVVIMVGDSLDKLVAEGKVSKSEHKLLALSRIGLAVKAGAP 130 SMG+TPQA+P RL RGE IDVVI+VG +LD L+ +GKVS + LA S I LAV+AGAP Sbjct: 62 SMGQTPQAVPARLARGEPIDVVIVVGYALDDLIRQGKVSANSRTALARSGIALAVRAGAP 121 Query: 131 KPDISSIDAFKRTLLTAHSVVYSDSASGVFLSTKLFKRLGIDQQMAYKGRMIPAEPVGEV 190 PDISS++ +RTLL A S+ YSDSASGV++ LFKRLGI +Q+ K RMIPAEPVG V Sbjct: 122 MPDISSVEGLRRTLLAATSIAYSDSASGVYIERDLFKRLGIAEQVKDKARMIPAEPVGAV 181 Query: 191 IARGDAEVGLQQISELKPVKGIDIIGPIPESAQQITPFSGGVVVGTHEPKAARELLDFLA 250 +ARG+AEVG QQ+SELKPV GI I+G +PE Q T FS GVV G+ EP+ AR L+ FLA Sbjct: 182 VARGEAEVGFQQLSELKPVPGIQIVGLLPEEVQLYTLFSAGVVAGSREPEPARALIRFLA 241 Query: 251 SPEAIDAIKASGLDP 265 PEA A++ASG++P Sbjct: 242 GPEAAAAVRASGMEP 256 >ref|YP_002498015.1| family 1 extracellular solute-binding protein [Methylobacterium nodulans ORS 2060] gb|ACL57712.1| extracellular solute-binding protein family 1 [Methylobacterium nodulans ORS 2060] Length = 263 Score = 265 bits (676), Expect = 8e-69, Method: Composition-based stats. Identities = 153/257 (59%), Positives = 190/257 (73%) Query: 11 VRTSLLQRSVLALALGAVTSLAAAADLHVVSSGGFAAAYKALAPAFEKKTGHKLISGWGP 70 +R L R + A ++ A AA++ VVSSGGFAAAY+ALAP FE++TGH L++ WGP Sbjct: 2 IRRFFLSRVLAFAAAILASAAAPAAEVRVVSSGGFAAAYRALAPEFERRTGHGLVTEWGP 61 Query: 71 SMGETPQAIPNRLQRGEQIDVVIMVGDSLDKLVAEGKVSKSEHKLLALSRIGLAVKAGAP 130 SMG+TPQA+P RL RGE IDVVIMVG +LD L+ +GKVS LA S I LAV+AGAP Sbjct: 62 SMGQTPQAVPARLARGEPIDVVIMVGYALDDLIRQGKVSADSRTALARSGIALAVRAGAP 121 Query: 131 KPDISSIDAFKRTLLTAHSVVYSDSASGVFLSTKLFKRLGIDQQMAYKGRMIPAEPVGEV 190 KPDISSID +RTLL A S+ YSDSASGV++ T+LF+RLGI + K RMIPAEPVG V Sbjct: 122 KPDISSIDGLRRTLLAAKSIAYSDSASGVYIETELFRRLGIADAVKAKARMIPAEPVGAV 181 Query: 191 IARGDAEVGLQQISELKPVKGIDIIGPIPESAQQITPFSGGVVVGTHEPKAARELLDFLA 250 +ARG+AEVG QQ+SELKPV GI+I+G +P Q T FS G V G+ P+AA L+ FLA Sbjct: 182 VARGEAEVGFQQLSELKPVPGIEIVGLLPAEVQLYTEFSAGRVEGSRAPEAASALIGFLA 241 Query: 251 SPEAIDAIKASGLDPAP 267 SP+A AI+ SG++P P Sbjct: 242 SPDAAGAIRESGMEPLP 258 >emb|CCA80326.1| putative molybdate-binding periplasmic protein precursor [blood disease bacterium R229] Length = 279 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 146/260 (56%), Positives = 187/260 (71%), Gaps = 2/260 (0%) Query: 7 TARSVRTSLLQRSVLALALGAVTSLAAAADLHVVSSGGFAAAYKALAPAFEKKTGHKLIS 66 T RS+R +L S A+ LG + A A D+ V++SGGF AAYKAL P FE+ TGH LI+ Sbjct: 17 TLRSLRAVVLAFS--AVTLGLLPVAAQADDVRVMNSGGFTAAYKALGPGFEQATGHSLIT 74 Query: 67 GWGPSMGETPQAIPNRLQRGEQIDVVIMVGDSLDKLVAEGKVSKSEHKLLALSRIGLAVK 126 WGPSMG +P+AIPNRL RGE+ DV+IMVG++LD L+ +G V + LA SRIG+ VK Sbjct: 75 VWGPSMGASPEAIPNRLARGERADVLIMVGEALDGLIRKGIVDPASRVDLAESRIGMVVK 134 Query: 127 AGAPKPDISSIDAFKRTLLTAHSVVYSDSASGVFLSTKLFKRLGIDQQMAYKGRMIPAEP 186 AGAPKPDI S+DAF+ LL A SV YSDSASGV++ T LFKRLGI+ +M K R I P Sbjct: 135 AGAPKPDIGSVDAFRNALLKAPSVAYSDSASGVYIETVLFKRLGINDRMRGKARKIEKIP 194 Query: 187 VGEVIARGDAEVGLQQISELKPVKGIDIIGPIPESAQQITPFSGGVVVGTHEPKAARELL 246 VG V+A G+ +G QQ+SEL PV G+D +G IPE Q++T FS G+ V P+AAR L+ Sbjct: 195 VGTVVASGEYAIGFQQVSELLPVPGVDFVGTIPEPLQKVTVFSAGIPVNAAHPEAARALI 254 Query: 247 DFLASPEAIDAIKASGLDPA 266 +LASPEA A++ASG++PA Sbjct: 255 RYLASPEAASAVRASGMEPA 274