BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2853.p (435 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774882.1| major facilitator superfamily permease [Herb... 701 0.0 ref|YP_004751528.1| general substrate transporter [Collimonas fu... 614 e-174 ref|YP_003775919.1| sugar permease of the major facilitator supe... 609 e-172 ref|YP_004753301.1| general substrate transporter [Collimonas fu... 603 e-170 ref|YP_001772845.1| general substrate transporter [Methylobacter... 594 e-168 >ref|YP_003774882.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ62974.1| permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 432 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 397/431 (92%), Positives = 412/431 (95%) Query: 5 TKTSCTAKHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISRTLFPSDNEFVSLILTFGTF 64 T T+ AKHSKLSTVLRVTSGNFLEMFDFFLYGFYASYIS+T FPSDNEFVSLILTFGTF Sbjct: 2 TTTTTNAKHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISKTFFPSDNEFVSLILTFGTF 61 Query: 65 GAGFLMRPLGAIILGSYIDRVGRRQGLIVTLAIMAIGTLLIAFVPGYATIGITAPILVLT 124 GAGFLMRPLGAIILGSYIDRVGRRQGLIVTLAIMAIGTLLIAFVPGYATIG+ APILVLT Sbjct: 62 GAGFLMRPLGAIILGSYIDRVGRRQGLIVTLAIMAIGTLLIAFVPGYATIGVAAPILVLT 121 Query: 125 GRLLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQWLSP 184 GRLLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQ LSP Sbjct: 122 GRLLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQSLSP 181 Query: 185 LQISEWGWRIPFFIGCMIVPAIFIIRRSLQETEEFMARKHHPGFAEIMASIAQNWKIVVA 244 +QIS+WGWRIPFFIGCMIVPAIFIIRRSLQET+EF+ARK HP F EIM+SIAQNWKIVVA Sbjct: 182 VQISDWGWRIPFFIGCMIVPAIFIIRRSLQETDEFLARKRHPSFGEIMSSIAQNWKIVVA 241 Query: 245 GMMMVVMTTVSFYLITVYTPTFGKTVLKLSASDSLIVTFCVGLSNFCWLPVMGALSDRVG 304 GMMMVVMTTVSFYLITVYTPTFGK VLKLSASDSLIVTFCVGLSNFCWLP+MGALSDRVG Sbjct: 242 GMMMVVMTTVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALSDRVG 301 Query: 305 RRPVLVAFTLLTLLTAYPMMSWLVADISFKNLLITELWLSFLYASYNGAMVVALTEVMPV 364 RRPVLVAFTLLTLLTAYP+MSWLV+DISFKNLLITELWLSFLYASYNGA VVALTEVMP Sbjct: 302 RRPVLVAFTLLTLLTAYPVMSWLVSDISFKNLLITELWLSFLYASYNGAAVVALTEVMPA 361 Query: 365 DVRTAGFSLAYSLATAVFGGFTPLVSTWLIESTGDKAAPGYWMSFAAVCGLIATLVLYRG 424 VRT GFSLAYSLATA+FGGFTPLVSTWLIE++GDKAAPGYWMSFAAVCGL+ATLVLYRG Sbjct: 362 HVRTVGFSLAYSLATAIFGGFTPLVSTWLIETSGDKAAPGYWMSFAAVCGLLATLVLYRG 421 Query: 425 KPATAPASSTA 435 K A A S TA Sbjct: 422 KSAAATVSPTA 432 >ref|YP_004751528.1| general substrate transporter [Collimonas fungivorans Ter331] gb|AEK60705.1| General substrate transporter [Collimonas fungivorans Ter331] Length = 478 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 315/422 (74%), Positives = 370/422 (87%) Query: 11 AKHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISRTLFPSDNEFVSLILTFGTFGAGFLM 70 + SK TVLRVTSGNF+EMFDFFL+GFYA+YIS+T FP+ +EF SL+LTF TFGAGFLM Sbjct: 54 SSQSKFGTVLRVTSGNFMEMFDFFLFGFYATYISKTFFPAGDEFASLMLTFMTFGAGFLM 113 Query: 71 RPLGAIILGSYIDRVGRRQGLIVTLAIMAIGTLLIAFVPGYATIGITAPILVLTGRLLQG 130 RPLGAIILG+Y+DRVGRR+GLI TLA+MA+GT+LIAFVPGYA+IG AP+LVL GRLLQG Sbjct: 114 RPLGAIILGAYVDRVGRRKGLITTLALMALGTMLIAFVPGYASIGYAAPLLVLIGRLLQG 173 Query: 131 FSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQWLSPLQISEW 190 FSAGVELGGVSVYL+EMATPG+KGFYVSWQSASQQ AI+ +A +G+ + WL P QI++W Sbjct: 174 FSAGVELGGVSVYLSEMATPGHKGFYVSWQSASQQVAIIVAAALGFGLQVWLQPAQIADW 233 Query: 191 GWRIPFFIGCMIVPAIFIIRRSLQETEEFMARKHHPGFAEIMASIAQNWKIVVAGMMMVV 250 GWRIPFF+GCMIVP +F+IRRSLQETEEFMARKH P EI+ S+ NW +VVAGMM+V Sbjct: 234 GWRIPFFVGCMIVPVLFVIRRSLQETEEFMARKHKPAMREILRSMVDNWGLVVAGMMLVS 293 Query: 251 MTTVSFYLITVYTPTFGKTVLKLSASDSLIVTFCVGLSNFCWLPVMGALSDRVGRRPVLV 310 MTTVSFYLITVYTPTFGK+VLKL+ D+L+VTFCVG+SNF WLPVMGALSDR+GR+P+L+ Sbjct: 294 MTTVSFYLITVYTPTFGKSVLKLTTIDALVVTFCVGISNFIWLPVMGALSDRIGRKPLLL 353 Query: 311 AFTLLTLLTAYPMMSWLVADISFKNLLITELWLSFLYASYNGAMVVALTEVMPVDVRTAG 370 FT+LT+LTAYP +SWLVAD +F+ +L+ ELWLSFLYASYNGAMVVALTEVMPV+VRTAG Sbjct: 354 VFTVLTILTAYPALSWLVADPTFQKMLMVELWLSFLYASYNGAMVVALTEVMPVEVRTAG 413 Query: 371 FSLAYSLATAVFGGFTPLVSTWLIESTGDKAAPGYWMSFAAVCGLIATLVLYRGKPATAP 430 FSLAYSLATA+FGGFTP ++T LIE TGDK APG WM+ AA+CGL ATL LYR P Sbjct: 414 FSLAYSLATAIFGGFTPAIATGLIEYTGDKGAPGMWMTAAAICGLFATLYLYRKNGNQTP 473 Query: 431 AS 432 A+ Sbjct: 474 AA 475 >ref|YP_003775919.1| sugar permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] gb|ADJ64011.1| sugar permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 332/427 (77%), Positives = 372/427 (87%) Query: 7 TSCTAKHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISRTLFPSDNEFVSLILTFGTFGA 66 T+ TA SK STVLRVTSGNF+EMFDFFL+GFYA++IS+ FPSDNEF SL+LTF TFGA Sbjct: 2 TTSTASQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGA 61 Query: 67 GFLMRPLGAIILGSYIDRVGRRQGLIVTLAIMAIGTLLIAFVPGYATIGITAPILVLTGR 126 GFLMRPLGAIILG+Y+DRVGRRQGLIVTLA+MA+GT+LIAFVP YATIG AP+LVL GR Sbjct: 62 GFLMRPLGAIILGAYVDRVGRRQGLIVTLALMALGTMLIAFVPSYATIGALAPLLVLIGR 121 Query: 127 LLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQWLSPLQ 186 LLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQ AI+ +A IGYL+S L+P + Sbjct: 122 LLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQVAIIVAAAIGYLLSTSLTPAE 181 Query: 187 ISEWGWRIPFFIGCMIVPAIFIIRRSLQETEEFMARKHHPGFAEIMASIAQNWKIVVAGM 246 +S WGWRIPFFIGC+IVP +F+IRRSLQETEEFM RKH P +I S+ +NWK+V+AGM Sbjct: 182 VSGWGWRIPFFIGCLIVPVLFVIRRSLQETEEFMRRKHRPSTGQIFRSMIENWKLVIAGM 241 Query: 247 MMVVMTTVSFYLITVYTPTFGKTVLKLSASDSLIVTFCVGLSNFCWLPVMGALSDRVGRR 306 M+V MTTVSFYLITVYTPTFGK VLKLS SLIVT CVGLSNF WLP+MGALSDRVGRR Sbjct: 242 MLVSMTTVSFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALSDRVGRR 301 Query: 307 PVLVAFTLLTLLTAYPMMSWLVADISFKNLLITELWLSFLYASYNGAMVVALTEVMPVDV 366 P+LV FT+LT+LTAYP ++WLV D SF +LI ELWLSFLYASYNGAMVVALTEVMP DV Sbjct: 302 PLLVTFTVLTILTAYPAVNWLVHDASFAKMLIVELWLSFLYASYNGAMVVALTEVMPADV 361 Query: 367 RTAGFSLAYSLATAVFGGFTPLVSTWLIESTGDKAAPGYWMSFAAVCGLIATLVLYRGKP 426 RTAGFSLAYSLATAVFGGFTP ++T LIE T DKAAPG WMS AAVCGLIATL+LYR K Sbjct: 362 RTAGFSLAYSLATAVFGGFTPAIATGLIEYTHDKAAPGIWMSTAAVCGLIATLILYRNKA 421 Query: 427 ATAPASS 433 A++ Sbjct: 422 VRQAATA 428 >ref|YP_004753301.1| general substrate transporter [Collimonas fungivorans Ter331] gb|AEK62478.1| General substrate transporter [Collimonas fungivorans Ter331] Length = 451 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 318/415 (76%), Positives = 366/415 (88%) Query: 11 AKHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISRTLFPSDNEFVSLILTFGTFGAGFLM 70 A SK TVLRVTSGNF+EMFDFFL+GFYA+YIS+T FPS +EF SL+LTF TFGAGFLM Sbjct: 19 ATPSKFGTVLRVTSGNFMEMFDFFLFGFYATYISKTFFPSGDEFASLMLTFMTFGAGFLM 78 Query: 71 RPLGAIILGSYIDRVGRRQGLIVTLAIMAIGTLLIAFVPGYATIGITAPILVLTGRLLQG 130 RPLGAI+LG+Y+DRVGRRQGLIVTLA+MA+GT+LIAFVPG+ATIG AP LVL GRLLQG Sbjct: 79 RPLGAILLGAYVDRVGRRQGLIVTLALMALGTVLIAFVPGFATIGYLAPFLVLIGRLLQG 138 Query: 131 FSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQWLSPLQISEW 190 FSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQ AI+ +A +GY ++ WL+PLQI W Sbjct: 139 FSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQVAIIVAAALGYALNIWLTPLQIGSW 198 Query: 191 GWRIPFFIGCMIVPAIFIIRRSLQETEEFMARKHHPGFAEIMASIAQNWKIVVAGMMMVV 250 GWR+PFFIGCMIVP +F+IRRSLQETEEFM RK P I S+ NW +V+ GMM+V Sbjct: 199 GWRVPFFIGCMIVPVLFMIRRSLQETEEFMKRKQRPDTRAIFRSMLDNWGLVITGMMLVA 258 Query: 251 MTTVSFYLITVYTPTFGKTVLKLSASDSLIVTFCVGLSNFCWLPVMGALSDRVGRRPVLV 310 MTTVSFYLIT+YTPTFGK VLKLS +DSLIVT CVG+SNF WLP+MGALSDR+GRRP+L+ Sbjct: 259 MTTVSFYLITIYTPTFGKNVLKLSTADSLIVTLCVGISNFIWLPIMGALSDRIGRRPILI 318 Query: 311 AFTLLTLLTAYPMMSWLVADISFKNLLITELWLSFLYASYNGAMVVALTEVMPVDVRTAG 370 FT+LT+L+AYP M+WL + SF+ +L+ ELWLSFLYASYNGAMVVALTEVMPV+VRTAG Sbjct: 319 FFTVLTVLSAYPAMTWLTSAPSFEKMLVVELWLSFLYASYNGAMVVALTEVMPVEVRTAG 378 Query: 371 FSLAYSLATAVFGGFTPLVSTWLIESTGDKAAPGYWMSFAAVCGLIATLVLYRGK 425 FSLAYSLATA+FGGFTP ++T LIE+TGDKAAPG WM+FAAVCGLIATLVLYR + Sbjct: 379 FSLAYSLATAIFGGFTPAIATALIEATGDKAAPGLWMTFAAVCGLIATLVLYRKR 433 >ref|YP_001772845.1| general substrate transporter [Methylobacterium sp. 4-46] gb|ACA20411.1| General substrate transporter [Methylobacterium sp. 4-46] Length = 477 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 311/410 (75%), Positives = 361/410 (88%) Query: 14 SKLSTVLRVTSGNFLEMFDFFLYGFYASYISRTLFPSDNEFVSLILTFGTFGAGFLMRPL 73 SK++TVLRVTSGNFLEMFDFFL+GFYA+YIS+ FP+ NE+ SL+LTF TFGAGFLMRPL Sbjct: 12 SKIATVLRVTSGNFLEMFDFFLFGFYATYISKAFFPTGNEYASLMLTFVTFGAGFLMRPL 71 Query: 74 GAIILGSYIDRVGRRQGLIVTLAIMAIGTLLIAFVPGYATIGITAPILVLTGRLLQGFSA 133 GAI LG+Y+D+VGRRQGLIVTL IMA+GT+LIAFVP YATIG+ AP LVL GRLLQGFSA Sbjct: 72 GAIFLGAYVDQVGRRQGLIVTLGIMAMGTILIAFVPSYATIGLLAPFLVLIGRLLQGFSA 131 Query: 134 GVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQWLSPLQISEWGWR 193 GVELGGVSVYLAEMATPG KGFYVSWQS SQQ AIM SALIGY++SQ L+P + WGWR Sbjct: 132 GVELGGVSVYLAEMATPGKKGFYVSWQSGSQQVAIMVSALIGYVLSQALTPEALGSWGWR 191 Query: 194 IPFFIGCMIVPAIFIIRRSLQETEEFMARKHHPGFAEIMASIAQNWKIVVAGMMMVVMTT 253 IPF IGC+IVP +F IRRSL+ETEEF+ RKH P EI AS+ +NW+IV+ GM++VVMTT Sbjct: 192 IPFVIGCLIVPFLFYIRRSLEETEEFLHRKHRPTAREIFASLGRNWQIVLLGMLLVVMTT 251 Query: 254 VSFYLITVYTPTFGKTVLKLSASDSLIVTFCVGLSNFCWLPVMGALSDRVGRRPVLVAFT 313 VSFY ITVYTPTFGK+VLKLSA DSL+VTFCV +SNF WLPVMGALSDRVGR+P+L+ F+ Sbjct: 252 VSFYTITVYTPTFGKSVLKLSAEDSLLVTFCVAVSNFFWLPVMGALSDRVGRKPILLVFS 311 Query: 314 LLTLLTAYPMMSWLVADISFKNLLITELWLSFLYASYNGAMVVALTEVMPVDVRTAGFSL 373 LTLLTAYP ++WLVA+ SF N+LI LWLSFLY SYNGAMVVALTE++P VRTAGFSL Sbjct: 312 ALTLLTAYPALAWLVANTSFTNMLIVLLWLSFLYGSYNGAMVVALTEIVPASVRTAGFSL 371 Query: 374 AYSLATAVFGGFTPLVSTWLIESTGDKAAPGYWMSFAAVCGLIATLVLYR 423 AYSLATA+FGGFTPLVSTWLIE TG++AAP +W++FA CGL+ATL++YR Sbjct: 372 AYSLATALFGGFTPLVSTWLIEVTGNRAAPAFWLAFAGACGLVATLLIYR 421