BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2850.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001893016.1| porin Gram-negative type [Ralstonia picketti... 313 3e-83 ref|ZP_07674486.1| outer membrane porin [Ralstonia sp. 5_7_47FAA... 312 5e-83 ref|YP_439700.1| outer membrane porin OpcP [Burkholderia thailan... 234 2e-59 ref|YP_001860396.1| porin [Burkholderia phymatum STM815] >gi|184... 229 4e-58 ref|ZP_02365564.1| outer membrane porin OpcP [Burkholderia oklah... 223 4e-56 >ref|YP_001893016.1| porin Gram-negative type [Ralstonia pickettii 12J] ref|YP_002984542.1| porin [Ralstonia pickettii 12D] gb|ACD29589.1| porin Gram-negative type [Ralstonia pickettii 12J] gb|ACS65870.1| porin Gram-negative type [Ralstonia pickettii 12D] Length = 366 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 196/373 (52%), Positives = 247/373 (66%), Gaps = 19/373 (5%) Query: 1 MKKVLFAVAATGFAASAFAQSNVTIYGSLDAGVAYVSNLGGGSVA----RVDQGTMQPDR 56 MK LFA+AA A +A AQSNVT+YGS+D GVAY+++L + + R+D GTMQPDR Sbjct: 1 MKTTLFAIAAMSLAGTAAAQSNVTLYGSIDEGVAYINSLKSSASSGSALRMDPGTMQPDR 60 Query: 57 IGFRGTEDLGGNLKANFQLETGFYTDSGAQPSAGKLFNRYSTVGLSGD-FGSVTLGHMPD 115 G RG+EDLGG +A FQLE+GF D+G+ AGKLFNR + VGL+ D G++ LGH D Sbjct: 61 FGLRGSEDLGGGTQAIFQLESGFLGDTGSSVVAGKLFNRTAWVGLTNDRLGNIQLGHQAD 120 Query: 116 VVFDYVGKLSNGFQLTNWYLFHPGNLDSLANTYQFDNAVRYTSPTLGGFQGSLMYGFGEV 175 +FDY+G+LSNGFQLTN+YLFHPGN D+LAN +Q DNAVRY SP GG Q MYGFGEV Sbjct: 121 FMFDYLGRLSNGFQLTNFYLFHPGNFDNLANQFQIDNAVRYVSPIFGGLQLGGMYGFGEV 180 Query: 176 AGDSSNGRNVSAGGTYTNGPFRAALAYSKLNNRAAGFAGTFLTSVGLGNA-----ATVFN 230 G S R+ S G YTNG FRAA AY+ N+RA AG + LG T + Sbjct: 181 PGSPSKSRSYSLGAYYTNGGFRAAAAYTASNDRALDIAGRLGITNTLGTTLVPGVMTPMS 240 Query: 231 SLTTTAGGLGYTIGN--VRLNTAYTQVKLALPSGATPKQKNLDLGAAWRYATLDTINFGY 288 S+ + G Y N V++N YTQ ++ L SGA + +N+DLG AW Y+ +T+N GY Sbjct: 241 SVKSFGAGTLYQFSNLPVQINAVYTQTRITL-SGANARAQNVDLGTAWHYSAANTLNVGY 299 Query: 289 GLSKLEGARWNTFSLSHVHEFSKRTQWYVQAAYQRAGGDARFAVMNGTGASGATGVSGGQ 348 SK EGARWN FSL +V+ FSKRTQ YVQ YQRA GDA+ A +NG GV+ + Sbjct: 300 TFSKYEGARWNQFSLGNVYAFSKRTQVYVQGTYQRASGDAQSAAING------VGVAAQR 353 Query: 349 GQLVTTIGMHHSF 361 Q+V + G+HHSF Sbjct: 354 NQMVVSTGVHHSF 366 >ref|ZP_07674486.1| outer membrane porin [Ralstonia sp. 5_7_47FAA] gb|EFP67166.1| outer membrane porin [Ralstonia sp. 5_7_47FAA] Length = 366 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 196/373 (52%), Positives = 245/373 (65%), Gaps = 19/373 (5%) Query: 1 MKKVLFAVAATGFAASAFAQSNVTIYGSLDAGVAYVSNL----GGGSVARVDQGTMQPDR 56 MK LFA+AA A +A AQSNVT+YGS+D GVAY+++L GS R+D GTMQPDR Sbjct: 1 MKTTLFAIAAMSLAGTAAAQSNVTLYGSIDEGVAYINSLKSGASSGSALRMDPGTMQPDR 60 Query: 57 IGFRGTEDLGGNLKANFQLETGFYTDSGAQPSAGKLFNRYSTVGLSGD-FGSVTLGHMPD 115 G RG+EDLGG +A FQLE+GF D+G+ AGKLFNR + VGL+ D G++ LGH D Sbjct: 61 FGLRGSEDLGGGTQAIFQLESGFLGDTGSSVVAGKLFNRTAWVGLTNDRLGNIQLGHQAD 120 Query: 116 VVFDYVGKLSNGFQLTNWYLFHPGNLDSLANTYQFDNAVRYTSPTLGGFQGSLMYGFGEV 175 +FDY+G+LSNGFQLTN+YLFHPGN D+LAN +Q DNAVRY SP GG Q MYGFGEV Sbjct: 121 FMFDYLGRLSNGFQLTNFYLFHPGNFDNLANQFQIDNAVRYVSPIFGGLQLGGMYGFGEV 180 Query: 176 AGDSSNGRNVSAGGTYTNGPFRAALAYSKLNNRAAGFAGTFLTSVGLGNA-----ATVFN 230 G S R+ S G YTNG FRAA AY+ N+RA AG + LG T + Sbjct: 181 PGSPSKSRSYSLGAYYTNGGFRAAAAYTASNDRALDVAGRLGITNTLGTTLVPGVMTPMS 240 Query: 231 SLTTTAGGLGYTIGN--VRLNTAYTQVKLALPSGATPKQKNLDLGAAWRYATLDTINFGY 288 S+ + G Y +++N YTQ ++ L GA + +N+DLG AW Y+ +T+N GY Sbjct: 241 SVKSFGAGTLYQFSGLPLQINAVYTQTRITL-GGANARAQNVDLGTAWHYSAANTLNVGY 299 Query: 289 GLSKLEGARWNTFSLSHVHEFSKRTQWYVQAAYQRAGGDARFAVMNGTGASGATGVSGGQ 348 SK EGARWN FSL +V+ FSKRTQ YVQ YQRA GDA+ A +NG GV+ + Sbjct: 300 TFSKYEGARWNQFSLGNVYAFSKRTQVYVQGTYQRASGDAQSAAING------VGVAAQR 353 Query: 349 GQLVTTIGMHHSF 361 QLV + G+HHSF Sbjct: 354 NQLVVSTGVHHSF 366 >ref|YP_439700.1| outer membrane porin OpcP [Burkholderia thailandensis E264] gb|ABC34948.1| outer membrane porin OpcP [Burkholderia thailandensis E264] Length = 496 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 150/353 (42%), Positives = 200/353 (56%), Gaps = 18/353 (5%) Query: 18 FAQSNVTIYGSLDAGVAYVSNLGGGSVARVDQGTMQPDRIGFRGTEDLGGNLKANFQLET 77 +AQS+VT+YGSLDAGVAYV+N+GGG+ + QG QPDR G +GTEDLGG LK FQLE Sbjct: 153 WAQSSVTLYGSLDAGVAYVNNVGGGAKWSMIQGNTQPDRWGLKGTEDLGGGLKTIFQLEN 212 Query: 78 GFYTDSGAQPSAGKLFNRYSTVGLSGD-FGSVTLGHMPDVVFDYVGKLSNGFQLTNWYLF 136 GFYT++G +AG ++NR + VGL+ D G++TLGH FD++ LS F +WY F Sbjct: 213 GFYTNNGQMAAAGTMWNRQAFVGLNSDKLGTLTLGHQTPFNFDWLDPLSTAFLAQSWYAF 272 Query: 137 HPGNLDSLANTYQ--FDNAVRYTSPTLGGFQGSLMYGFGEVAGDSSNGRNVSAGGTYTNG 194 HPGNLD LA+T F+N+V+Y +PT GF M GFG + S GR +S G Y NG Sbjct: 273 HPGNLDQLADTSTVPFNNSVKYRTPTFAGFTAGAMLGFGNTT-NFSTGRTMSFGVNYANG 331 Query: 195 PFRAALAYSKLNNRA------AGFAGTFLTSVGLGNAATVFNSLTTTAGGLGYTIGNVRL 248 PF+AA YS +++A G AG T G+ A+ V GL Y G + + Sbjct: 332 PFKAAAVYSNEHDQAFSMATVGGIAGPGGTFQGMPVASYVAKKAQNMGAGLSYRFGPLLV 391 Query: 249 NTAYTQVKLALPSGATPKQKNLDLGAAWRYATLDTINFGYGLSKLEGARWNTFSLSHVHE 308 + YT+VKL + Q + D GA ++ + + I G S L G RW F L + Sbjct: 392 HGLYTRVKLQANDHSDTFQ-SYDAGANYQSSPFNVIAGGAASSTLAGRRWTQFELGDTYS 450 Query: 309 FSKRTQWYVQAAYQRAGGDARFAVMNGTGASGATGVSGGQGQLVTTIGMHHSF 361 SKRTQ Y Y+ A G+A+ A G S Q++ G+HHSF Sbjct: 451 LSKRTQVYANVLYEHASGNAKAAFFTA-------GASSTANQVIFLTGIHHSF 496 >ref|YP_001860396.1| porin [Burkholderia phymatum STM815] gb|ACC73350.1| porin Gram-negative type [Burkholderia phymatum STM815] Length = 357 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 154/366 (42%), Positives = 211/366 (57%), Gaps = 14/366 (3%) Query: 1 MKKVLFA-VAATGFAASAFAQSNVTIYGSLDAGVAYVSNLGGGSVARVDQGTMQPDRIGF 59 MK+++ A VA ++++AQS+VT+YGSLDAG+AYVSN+GG S +QG MQPDR G Sbjct: 1 MKRIIAAGVAGLMVTSTSWAQSSVTLYGSLDAGIAYVSNVGGHSKWMEEQGNMQPDRWGL 60 Query: 60 RGTEDLGGNLKANFQLETGFYTDSGAQPSAGKLFNRYSTVGLSGD-FGSVTLGHMPDVVF 118 RG EDLGG L A FQLE GFYT++G AG LFNR + VG+S D FG +TLGH F Sbjct: 61 RGVEDLGGGLHAIFQLENGFYTNTGNFAKAGTLFNRQAYVGISSDQFGQITLGHQTPFNF 120 Query: 119 DYVGKLSNGFQLTNWYLFHPGNLDSLANT--YQFDNAVRYTSPTLGGFQGSLMYGFGEVA 176 D +G LS + +W+ FHPGN+D LA+T FDN+V+Y S + GF M G G Sbjct: 121 DMLGPLSTAYLAASWFAFHPGNIDELADTGVVPFDNSVKYKSISYAGFTVGAMMGLGNTT 180 Query: 177 GDSSNGRNVSAGGTYTNGPFRAALAYSKLNNRAAGFAGTFLTSVGLGNAATV-FNSLTTT 235 + S G+ +S G Y NGPF+AA YS +NR T + + A+T + + Sbjct: 181 -NFSTGKTLSFGVNYANGPFKAAAVYSNEHNRTPSIITTGINTFQNIPASTYSADKVENM 239 Query: 236 AGGLGYTIGNVRLNTAYTQVKLALPSGATPKQKNLDLGAAWRYATLDTINFGYGLSKLEG 295 GL Y GN+ ++ YT+VKL +G + ++ D GA +++ +T+ G + L G Sbjct: 240 GAGLSYQFGNLLVHGLYTRVKLQ-SNGFSDTYQSWDAGANYQFTPANTLAGGAATTTLAG 298 Query: 296 ARWNTFSLSHVHEFSKRTQWYVQAAYQRAGGDARFAVMNGTGASGATGVSGGQGQLVTTI 355 RW F + ++ SKRTQ YV Y+ A DA A GVS G+ Q + Sbjct: 299 RRWTQFEIGDIYALSKRTQVYVNVLYEHANEDAHAAFFTA-------GVSSGRNQAIVLT 351 Query: 356 GMHHSF 361 G+HHSF Sbjct: 352 GIHHSF 357 >ref|ZP_02365564.1| outer membrane porin OpcP [Burkholderia oklahomensis C6786] Length = 362 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 203/353 (57%), Gaps = 18/353 (5%) Query: 18 FAQSNVTIYGSLDAGVAYVSNLGGGSVARVDQGTMQPDRIGFRGTEDLGGNLKANFQLET 77 +AQSNVT+YGSLDAGVAYV+N+GGG+ + QG QPDR G +G EDLGG LKA FQLE Sbjct: 19 WAQSNVTLYGSLDAGVAYVNNVGGGAKWSMIQGNTQPDRWGLKGVEDLGGGLKAIFQLEN 78 Query: 78 GFYTDSGAQPSAGKLFNRYSTVGLSGD-FGSVTLGHMPDVVFDYVGKLSNGFQLTNWYLF 136 GFYT++G +AG ++NR + VGL+ D G++TLGH FD++ LS F +WY F Sbjct: 79 GFYTNNGQMAAAGTMWNRQAFVGLNSDKLGTLTLGHQTPFNFDWLDPLSTAFLAQSWYAF 138 Query: 137 HPGNLDSLANTYQ--FDNAVRYTSPTLGGFQGSLMYGFGEVAGDSSNGRNVSAGGTYTNG 194 HPGNLD LA+T F+N+V+Y SPT GF M GFG + S GR +S G Y NG Sbjct: 139 HPGNLDQLADTSTVPFNNSVKYRSPTYAGFTAGAMLGFGNTT-NFSTGRTMSFGVNYANG 197 Query: 195 PFRAALAYSKLNNRA------AGFAGTFLTSVGLGNAATVFNSLTTTAGGLGYTIGNVRL 248 PF+AA YS +++A G AG T G+ A+ V GL Y G + + Sbjct: 198 PFKAAAVYSNEHDQAFSMATVGGIAGPGGTFQGMPVASYVAQKAENMGAGLSYQFGPLLV 257 Query: 249 NTAYTQVKLALPSGATPKQKNLDLGAAWRYATLDTINFGYGLSKLEGARWNTFSLSHVHE 308 + YT+VKL +G + ++ D GA ++ + + I G S L G RW L ++ Sbjct: 258 HGLYTRVKLQ-ANGRSDTFQSYDAGANYQTSPFNVIAGGAATSTLAGRRWTQLELGDIYS 316 Query: 309 FSKRTQWYVQAAYQRAGGDARFAVMNGTGASGATGVSGGQGQLVTTIGMHHSF 361 SKRTQ Y Y+ AGG+A+ A G S Q++ G+HHSF Sbjct: 317 LSKRTQLYANVLYEHAGGNAKAAFFTA-------GASSTANQVILLTGIHHSF 362