BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2849.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001893017.1| ferredoxin [Ralstonia pickettii 12J] >gi|241... 389 e-106 ref|ZP_07674485.1| phenoxybenzoate dioxygenase subunit beta (4-c... 387 e-105 ref|YP_297781.1| ferredoxin:oxidoreductase FAD/NAD(P)-binding:ox... 387 e-105 ref|YP_728901.1| flavodoxin reductase (ferredoxin-NADPH reductas... 383 e-104 ref|YP_004680891.1| phenoxybenzoate dioxygenase subunit beta [Cu... 382 e-104 >ref|YP_001893017.1| ferredoxin [Ralstonia pickettii 12J] ref|YP_002984543.1| ferredoxin [Ralstonia pickettii 12D] gb|ACD29590.1| ferredoxin [Ralstonia pickettii 12J] gb|ACS65871.1| ferredoxin [Ralstonia pickettii 12D] Length = 316 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 205/317 (64%), Positives = 241/317 (76%), Gaps = 3/317 (0%) Query: 1 MSSPLLSVRVQAMRFEALGVVSVELCLPDGGELPAFEAGAHIDLHLANGLVRSYSLSNSP 60 M+SPL ++RV AMR+EA G+VSVEL DG LP + GAHI+LHL NGLVRSYSL +P Sbjct: 1 MNSPL-NLRVHAMRYEAQGIVSVELRDVDGKTLPEYAPGAHIELHLGNGLVRSYSLCGAP 59 Query: 61 AERHHYVVGVLNDRASRGGSRYVHEQLRVGSTLSISAPRNNFPLEEAAPLSVLIAGGIGI 120 R YVVGVL DR SRGGSRYVHEQLRVGSTL I PRN+F L+E AP +VL+AGGIG+ Sbjct: 60 EVRDRYVVGVLLDRNSRGGSRYVHEQLRVGSTLKIGGPRNHFELDETAPRTVLVAGGIGV 119 Query: 121 TPISCMYHHLRAQGKEAVLHYCARSRKEAAFTAQLLGQ-PGVSSHFDDEAGTAPDLRAVL 179 TPI CM L QGK + YCARSR EAAF +L V H D EAG APDL+A+L Sbjct: 120 TPIVCMARRLAEQGKAFSMLYCARSRAEAAFADELAAHGEAVRFHLDAEAGGAPDLKALL 179 Query: 180 GAYPKESHFYCCGPTPMLNAFESLCEELGLPNVHIERFAAEK-VAPVQHGSYVAELVRSK 238 +P ++HFYCCGP PML AFE+ CE LG NVHIERFAA+ V VQ G Y +L R+ Sbjct: 180 AGHPADTHFYCCGPGPMLRAFEAACEALGYTNVHIERFAADPGVESVQEGEYQVKLARNG 239 Query: 239 SSLTVPAGKSLLDTLLDAGIAVDHSCREGVCGACETRVLEGEPEHRDGVLSKAERAAGKT 298 + L VPAGKSLLD LL+ G+ V+HSC+EGVCG+CETRVLEGEP+HRD VLSK+ERA+ +T Sbjct: 240 AELCVPAGKSLLDALLEIGVEVEHSCKEGVCGSCETRVLEGEPDHRDSVLSKSERASNQT 299 Query: 299 MMVCVSGCKGQRLVLDL 315 MMVCVSGCKG+RLV+DL Sbjct: 300 MMVCVSGCKGKRLVIDL 316 >ref|ZP_07674485.1| phenoxybenzoate dioxygenase subunit beta (4-carboxydiphenyl ether;phenoxybenzoate dioxygenase subunit beta) [Ralstonia sp. 5_7_47FAA] gb|EFP67165.1| phenoxybenzoate dioxygenase subunit beta (4-carboxydiphenyl ether;phenoxybenzoate dioxygenase subunit beta) [Ralstonia sp. 5_7_47FAA] Length = 316 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 200/315 (63%), Positives = 238/315 (75%), Gaps = 2/315 (0%) Query: 3 SPLLSVRVQAMRFEALGVVSVELCLPDGGELPAFEAGAHIDLHLANGLVRSYSLSNSPAE 62 +P L++RV AMR+EA G+VSVEL DG LP + GAHI+LHL NGLVRSYSL +P Sbjct: 2 NPPLNLRVHAMRYEAQGIVSVELRDVDGKTLPEYAPGAHIELHLGNGLVRSYSLCGAPEV 61 Query: 63 RHHYVVGVLNDRASRGGSRYVHEQLRVGSTLSISAPRNNFPLEEAAPLSVLIAGGIGITP 122 R YVVGVL DR SRGGSRYVHEQLRVGSTL I PRN+F ++E AP +VL+AGGIG+TP Sbjct: 62 RDRYVVGVLLDRNSRGGSRYVHEQLRVGSTLKIGGPRNHFEMDETAPYTVLVAGGIGVTP 121 Query: 123 ISCMYHHLRAQGKEAVLHYCARSRKEAAFTAQLLGQ-PGVSSHFDDEAGTAPDLRAVLGA 181 I CM L QGK + YCARSR +AAF +L G V H D EAG PDL+A+L Sbjct: 122 IVCMARRLAEQGKAFSMLYCARSRADAAFADELAGHGDAVRFHLDAEAGGPPDLKALLAG 181 Query: 182 YPKESHFYCCGPTPMLNAFESLCEELGLPNVHIERFAAEK-VAPVQHGSYVAELVRSKSS 240 + ++HFYCCGP PML AFE+ CE LG NVHIERFAA+ V VQ G Y +L R+ + Sbjct: 182 HSTDTHFYCCGPGPMLRAFEAACEALGYTNVHIERFAADPGVESVQDGEYQVKLARNGAE 241 Query: 241 LTVPAGKSLLDTLLDAGIAVDHSCREGVCGACETRVLEGEPEHRDGVLSKAERAAGKTMM 300 L VPAGKSLLD LL+ G+ V+HSC+EGVCG+CETRVLEGEP+HRD VLSK+ERA+ +TMM Sbjct: 242 LCVPAGKSLLDALLEIGVEVEHSCKEGVCGSCETRVLEGEPDHRDSVLSKSERASNQTMM 301 Query: 301 VCVSGCKGQRLVLDL 315 VCVSGCKG+RLV+DL Sbjct: 302 VCVSGCKGKRLVIDL 316 >ref|YP_297781.1| ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region [Ralstonia eutropha JMP134] gb|AAZ62937.1| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region [Ralstonia eutropha JMP134] Length = 318 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 200/312 (64%), Positives = 235/312 (75%), Gaps = 2/312 (0%) Query: 6 LSVRVQAMRFEALGVVSVELCLPDGGELPAFEAGAHIDLHLANGLVRSYSLSNSPAERHH 65 L++RVQAMR+EA G+VS+EL PDG LP + GAHIDLHL NGLVRSYSL +P R Sbjct: 7 LTMRVQAMRYEARGIVSLELQDPDGATLPEYGPGAHIDLHLGNGLVRSYSLCGAPEVRDR 66 Query: 66 YVVGVLNDRASRGGSRYVHEQLRVGSTLSISAPRNNFPLEEAAPLSVLIAGGIGITPISC 125 Y VGVL DR SRGGSRYVHEQLRVG+TL++SAPRNNF L+E+A +VL+AGGIG+TPI C Sbjct: 67 YTVGVLQDRNSRGGSRYVHEQLRVGATLNVSAPRNNFELDESAAHTVLVAGGIGVTPIVC 126 Query: 126 MYHHLRAQGKEAVLHYCARSRKEAAFTAQLLGQ-PGVSSHFDDEAGTAPDLRAVLGAYPK 184 M L G+ L YCAR+R EAAF L V HFDDEAG PD++A+L Sbjct: 127 MARRLAELGRSFTLLYCARTRAEAAFVDSLSAYGDAVRFHFDDEAGAPPDMKAMLAGQDA 186 Query: 185 ESHFYCCGPTPMLNAFESLCEELGLPNVHIERFAAE-KVAPVQHGSYVAELVRSKSSLTV 243 ++H YCCGP PMLNAFE+ CE G PNVHIERFAA+ VQ G YV +L R+ S + V Sbjct: 187 QTHLYCCGPGPMLNAFEAACEAHGYPNVHIERFAADPSTESVQEGEYVVQLSRTGSLVKV 246 Query: 244 PAGKSLLDTLLDAGIAVDHSCREGVCGACETRVLEGEPEHRDGVLSKAERAAGKTMMVCV 303 P+GKSLLD LL+AG+ V+HSCREGVCG+CET VLEG P+HRD VLS +ERA+ KTMMVCV Sbjct: 247 PSGKSLLDALLEAGLDVEHSCREGVCGSCETAVLEGCPDHRDSVLSNSERASNKTMMVCV 306 Query: 304 SGCKGQRLVLDL 315 SGCKG RLVLDL Sbjct: 307 SGCKGSRLVLDL 318 >ref|YP_728901.1| flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1 [Ralstonia eutropha H16] emb|CAJ95536.1| flavodoxin reductase (ferredoxin-NADPH reductase) family 1 [Ralstonia eutropha H16] Length = 318 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 198/312 (63%), Positives = 232/312 (74%), Gaps = 2/312 (0%) Query: 6 LSVRVQAMRFEALGVVSVELCLPDGGELPAFEAGAHIDLHLANGLVRSYSLSNSPAERHH 65 L++RV AMR+EA GVVS+EL P+G LP + GAHIDLHL NGLVRSYSL +P R Sbjct: 7 LTLRVHAMRYEARGVVSIELQDPEGKTLPEYSPGAHIDLHLGNGLVRSYSLCGAPEARRR 66 Query: 66 YVVGVLNDRASRGGSRYVHEQLRVGSTLSISAPRNNFPLEEAAPLSVLIAGGIGITPISC 125 Y VGVL DR SRGGSRYVHEQLRVG+TL++ APRNNF L+E+A +VL+AGGIG+TPI C Sbjct: 67 YTVGVLLDRGSRGGSRYVHEQLRVGATLTVGAPRNNFELDESAAHTVLVAGGIGVTPIVC 126 Query: 126 MYHHLRAQGKEAVLHYCARSRKEAAFTAQLLGQ-PGVSSHFDDEAGTAPDLRAVLGAYPK 184 M L G+ L YCARSR EAAF QL V HFDDEAG PDL A+L Sbjct: 127 MARRLAELGRSFTLIYCARSRAEAAFVEQLSAHGDAVHFHFDDEAGVPPDLNAMLAGQEV 186 Query: 185 ESHFYCCGPTPMLNAFESLCEELGLPNVHIERFAAE-KVAPVQHGSYVAELVRSKSSLTV 243 ++HFYCCGP PML AFE+ CE G PNVHIERFAA+ VQ G Y L R+ +++ V Sbjct: 187 QTHFYCCGPGPMLKAFEAACEAHGYPNVHIERFAADPSTEAVQEGEYTVSLSRTGTTVKV 246 Query: 244 PAGKSLLDTLLDAGIAVDHSCREGVCGACETRVLEGEPEHRDGVLSKAERAAGKTMMVCV 303 P+GKSLLD LLDAG+ +D+SCREGVCG+CET VLEG P+HRD VLS +ERA+ KTMMVCV Sbjct: 247 PSGKSLLDALLDAGVQMDYSCREGVCGSCETAVLEGCPDHRDSVLSNSERASNKTMMVCV 306 Query: 304 SGCKGQRLVLDL 315 SGCKG +LVLDL Sbjct: 307 SGCKGSKLVLDL 318 >ref|YP_004680891.1| phenoxybenzoate dioxygenase subunit beta [Cupriavidus necator N-1] gb|AEI79659.1| phenoxybenzoate dioxygenase subunit beta [Cupriavidus necator N-1] Length = 318 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 198/312 (63%), Positives = 231/312 (74%), Gaps = 2/312 (0%) Query: 6 LSVRVQAMRFEALGVVSVELCLPDGGELPAFEAGAHIDLHLANGLVRSYSLSNSPAERHH 65 L++RV AMR+EA GVVS+EL P+G LP + GAHIDLHL NGLVRSYSL +P R Sbjct: 7 LTLRVHAMRYEARGVVSIELQDPEGKTLPEYSPGAHIDLHLGNGLVRSYSLCGAPEARQR 66 Query: 66 YVVGVLNDRASRGGSRYVHEQLRVGSTLSISAPRNNFPLEEAAPLSVLIAGGIGITPISC 125 Y VGVL DR SRGGSRYVHEQLRVG+TL++ APRNNF L+E+A +VL+AGGIG+TPI C Sbjct: 67 YTVGVLLDRGSRGGSRYVHEQLRVGTTLTVGAPRNNFALDESAAHTVLVAGGIGVTPIVC 126 Query: 126 MYHHLRAQGKEAVLHYCARSRKEAAFTAQLLGQ-PGVSSHFDDEAGTAPDLRAVLGAYPK 184 M L GK L YCARSR EAAF QL V HFDDEAG PDL A+L Sbjct: 127 MARRLAELGKSFTLIYCARSRAEAAFVEQLSAHGDAVRFHFDDEAGVPPDLNAMLAGQDP 186 Query: 185 ESHFYCCGPTPMLNAFESLCEELGLPNVHIERFAAE-KVAPVQHGSYVAELVRSKSSLTV 243 ++HFYCCGP PML AFE+ CE PNVHIERFAA+ VQ G Y L R+ +++ V Sbjct: 187 QTHFYCCGPGPMLKAFEAACEAHSYPNVHIERFAADPSTEAVQEGEYTVSLSRTGTTVKV 246 Query: 244 PAGKSLLDTLLDAGIAVDHSCREGVCGACETRVLEGEPEHRDGVLSKAERAAGKTMMVCV 303 P+GKSLLD LLDAG+ +D+SCREGVCG+CET VLEG P+HRD VLS +ERA+ KTMMVCV Sbjct: 247 PSGKSLLDALLDAGVQMDYSCREGVCGSCETAVLEGCPDHRDSVLSSSERASNKTMMVCV 306 Query: 304 SGCKGQRLVLDL 315 SGCKG +LVLDL Sbjct: 307 SGCKGSKLVLDL 318