BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2848.p (147 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003280644.1| endoribonuclease L-PSP [Comamonas testostero... 150 7e-35 gb|AAT49568.1| PA3499 [synthetic construct] 146 8e-34 ref|NP_252189.1| hypothetical protein PA3499 [Pseudomonas aerugi... 146 1e-33 ref|YP_003982524.1| endoribonuclease L-PSP family protein [Achro... 92 3e-17 ref|ZP_06594666.1| conserved hypothetical protein [Streptomyces ... 87 1e-15 >ref|YP_003280644.1| endoribonuclease L-PSP [Comamonas testosteroni CNB-2] gb|ACY35348.1| Endoribonuclease L-PSP [Comamonas testosteroni CNB-2] Length = 130 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 83/130 (63%), Positives = 98/130 (75%), Gaps = 6/130 (4%) Query: 18 VPEPDAATWSNCLVIGEDIVMSGMTAHPATRQQT-----LDTYRQTLVVLRKIADLVSAA 72 +P+ ATWSN LV+G ++V+SG TAHPA+R + L Y QTLVVLRKI L+ AA Sbjct: 1 MPDLPHATWSNALVVGNEVVLSGQTAHPASRDASEAGTPLSAYDQTLVVLRKIQALLEAA 60 Query: 73 GGTPDSITKLVIYLTDIAHKDEVGRARRDFFGEQGPYPCSTLVEVSALVFPELTVEIDAY 132 GG +ITKLV+Y+TDI+ KD VGRARRDFFG P+P STLV V ALVFPEL VEIDA+ Sbjct: 61 GGGVHNITKLVVYVTDISDKDGVGRARRDFFGST-PWPASTLVAVQALVFPELKVEIDAF 119 Query: 133 ARLGVDLRQA 142 ARL VDLRQA Sbjct: 120 ARLDVDLRQA 129 >gb|AAT49568.1| PA3499 [synthetic construct] Length = 145 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 76/135 (56%), Positives = 100/135 (74%), Gaps = 5/135 (3%) Query: 10 MRHVKCASVPEPDAATWSNCLVIGEDIVMSGMTAHPATRQQT-----LDTYRQTLVVLRK 64 +R ++ A++P+ A+WSN L++GE++VMSGMTAHPATRQ LD + Q LVVL K Sbjct: 4 VRRIRAAALPDLPDASWSNALLVGEELVMSGMTAHPATRQAAERGAALDAHAQALVVLGK 63 Query: 65 IADLVSAAGGTPDSITKLVIYLTDIAHKDEVGRARRDFFGEQGPYPCSTLVEVSALVFPE 124 + L+ AAGG ++ KL +Y+T IA KD +GRAR++FF QG +P STLVEVS LVFPE Sbjct: 64 VKALLEAAGGHVGNLYKLNVYVTRIADKDAIGRARQEFFAGQGTFPASTLVEVSGLVFPE 123 Query: 125 LTVEIDAYARLGVDL 139 L VEIDA+ARL +DL Sbjct: 124 LLVEIDAWARLDIDL 138 >ref|NP_252189.1| hypothetical protein PA3499 [Pseudomonas aeruginosa PAO1] pdb|2IG8|A Chain A, Crystal Structure Of A Protein Of Unknown Function Pa3499 From Pseudomonas Aeruginosa pdb|2IG8|B Chain B, Crystal Structure Of A Protein Of Unknown Function Pa3499 From Pseudomonas Aeruginosa pdb|2IG8|C Chain C, Crystal Structure Of A Protein Of Unknown Function Pa3499 From Pseudomonas Aeruginosa gb|AAG06887.1|AE004770_12 hypothetical protein PA3499 [Pseudomonas aeruginosa PAO1] Length = 144 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 76/135 (56%), Positives = 100/135 (74%), Gaps = 5/135 (3%) Query: 10 MRHVKCASVPEPDAATWSNCLVIGEDIVMSGMTAHPATRQQT-----LDTYRQTLVVLRK 64 +R ++ A++P+ A+WSN L++GE++VMSGMTAHPATRQ LD + Q LVVL K Sbjct: 4 VRRIRAAALPDLPDASWSNALLVGEELVMSGMTAHPATRQAAERGAALDAHAQALVVLGK 63 Query: 65 IADLVSAAGGTPDSITKLVIYLTDIAHKDEVGRARRDFFGEQGPYPCSTLVEVSALVFPE 124 + L+ AAGG ++ KL +Y+T IA KD +GRAR++FF QG +P STLVEVS LVFPE Sbjct: 64 VKALLEAAGGHVGNLYKLNVYVTRIADKDAIGRARQEFFAGQGTFPASTLVEVSGLVFPE 123 Query: 125 LTVEIDAYARLGVDL 139 L VEIDA+ARL +DL Sbjct: 124 LLVEIDAWARLDIDL 138 >ref|YP_003982524.1| endoribonuclease L-PSP family protein [Achromobacter xylosoxidans A8] gb|ADP19809.1| endoribonuclease L-PSP family protein 16 [Achromobacter xylosoxidans A8] Length = 131 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 4/121 (3%) Query: 18 VPEPDAATWSNCLVIGEDIVMSGMTA--HPATRQQTLDTYRQTLVVLRKIADLVSAAGGT 75 V E + WSNCL + + + +SG+TA + T Q D Y Q V+ K+ L+ AAGG Sbjct: 12 VAEAEPGLWSNCLRVKDSVYLSGLTARANDGTTIQGADAYEQAQVIFAKMKHLLEAAGGQ 71 Query: 76 PDSITKLVIYLTDIAHKDEVGRARRDFFGEQGPYPCSTLVEVSALVFPELTVEIDAYARL 135 D + + I+LT++A +V +ARR+FF G +P LV+VSAL PE+ VEI ARL Sbjct: 72 IDDMVTMTIFLTNMADNQQVWKARREFF--SGDFPACALVQVSALAKPEILVEIQGQARL 129 Query: 136 G 136 Sbjct: 130 A 130 >ref|ZP_06594666.1| conserved hypothetical protein [Streptomyces albus J1074] gb|EFE85127.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 161 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 56/118 (47%), Positives = 68/118 (57%), Gaps = 4/118 (3%) Query: 21 PDAATWSNCLVIGEDIVMSGMTAHPATRQQTLD--TYRQTLVVLRKIADLVSAAGGTPDS 78 P +S+ V+G+ +SGM A D Y Q L K+ LV AAGG D Sbjct: 41 PRPGMFSHAKVVGDRFSLSGMHAGDGRGGVLGDGSAYDQARRALTKVKALVEAAGGVMDD 100 Query: 79 ITKLVIYLTDIAHKDEVGRARRDFFGEQGPYPCSTLVEVSALVFPELTVEIDAYARLG 136 + L +YLTDI K EVGRAR +FF G +PCSTLVEVSALV P LTVEI+A +G Sbjct: 101 VQNLRVYLTDIQDKGEVGRARTEFF--TGDFPCSTLVEVSALVEPALTVEIEAEGVIG 156