BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2847.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003280645.1| Rieske iron-sulfur protein [Comamonas testos... 551 e-155 ref|YP_004155878.1| rieske (2fe-2S) iron-sulfur domain [Variovor... 546 e-153 ref|YP_550480.1| Rieske (2Fe-2S) domain-containing protein [Pola... 542 e-152 ref|XP_002943668.1| PREDICTED: chlorophyllide a oxygenase, chlor... 541 e-152 gb|AAT51469.1| PA3500 [synthetic construct] 541 e-152 >ref|YP_003280645.1| Rieske iron-sulfur protein [Comamonas testosteroni CNB-2] gb|ACY35349.1| Rieske iron-sulfur protein [Comamonas testosteroni CNB-2] Length = 347 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 256/339 (75%), Positives = 287/339 (84%), Gaps = 3/339 (0%) Query: 7 DPVDAVLAVGLKDLWYPVCPSEFVAEKPVSLRRLGKKFVFWREPSGKLHALEDHCPHRGA 66 DPVD +L VGLKDLWYP+CPS F+ EKPVSLRRLG+K WR+ G LHALED CPHRGA Sbjct: 9 DPVDQLLEVGLKDLWYPICPSSFIQEKPVSLRRLGRKLALWRDHDGVLHALEDRCPHRGA 68 Query: 67 PLSMGIPMGDRIACGYHGVQVRFDGVVTSVPGSPGCKLEGAKATRRFHVTEAAGAIFLYN 126 PLS G+ +GDR++C YHGV+VR DG VT VPGSPGCKLEG++ T FHV EAAGA+FLYN Sbjct: 69 PLSQGVILGDRLSCPYHGVEVRCDGTVTRVPGSPGCKLEGSRPTFHFHVKEAAGAVFLYN 128 Query: 127 SLEDVDTPPPLRLPEELTS-PEYSSFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHSMA 185 S VD PPPL LPE+LT+ EYS FLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHSMA Sbjct: 129 SSVPVDEPPPLVLPEQLTNDEEYSHFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHSMA 188 Query: 186 EGDNTASFGIRETDIGFVFEKEGQRDVNFDWTEWGDTGLHWMRLAIPYPKTGGPGGSFVI 245 EGD A FG+R TD GFVFEKEGQR+VNFDWTEW DTG+HWMRL IPYPKTGGPGG+F+I Sbjct: 189 EGDAEAKFGVRSTDTGFVFEKEGQRNVNFDWTEWADTGIHWMRLEIPYPKTGGPGGNFII 248 Query: 246 IGSYTPVVDNIAAVFHWRCRKL-SGWQRDTWRFLYRNRLEARHWNVLEQDRVVLELMEPD 304 GSYTP+ N+AAVFHWRCRKL GW+RDTWRFLY+NRLEARHW+VLEQDR +LE MEPD Sbjct: 249 CGSYTPIASNMAAVFHWRCRKLPKGWERDTWRFLYQNRLEARHWHVLEQDRTMLEDMEPD 308 Query: 305 ANQREMLYQHDMGIVRLRRHLRGLAKAQL-AREEELAAA 342 ANQ E LYQHD+GIVRLRRHL+ LA+ Q+ AR+ AA Sbjct: 309 ANQHENLYQHDLGIVRLRRHLKNLAQEQIDARQAAGTAA 347 >ref|YP_004155878.1| rieske (2fe-2S) iron-sulfur domain [Variovorax paradoxus EPS] gb|ADU37767.1| Rieske (2Fe-2S) iron-sulfur domain [Variovorax paradoxus EPS] Length = 348 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 249/329 (75%), Positives = 285/329 (86%), Gaps = 2/329 (0%) Query: 7 DPVDAVLAVGLKDLWYPVCPSEFVAEKPVSLRRLGKKFVFWREPSGKLHALEDHCPHRGA 66 DPV +L +GLKDLWYP+CPS F+ E P+SLRRLG+K WR+ G LHALED CPHRGA Sbjct: 11 DPVGDLLEIGLKDLWYPICPSHFIKENPISLRRLGRKIALWRDGEGVLHALEDRCPHRGA 70 Query: 67 PLSMGIPMGDRIACGYHGVQVRFDGVVTSVPGSPGCKLEGAKATRRFHVTEAAGAIFLYN 126 PLS G+ +GDR++C YHGV+VR DGVVT VPGSPGCKLEG++ATR FHV E AGA+FLYN Sbjct: 71 PLSQGVILGDRLSCPYHGVEVRHDGVVTRVPGSPGCKLEGSQATRHFHVQERAGAVFLYN 130 Query: 127 SLEDVDTPPPLRLPEELT-SPEYSSFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHSMA 185 S E VD PP L LPE+LT EYSSFLCYTEWKGDYRYVLDNVMDPMHGT+LHKQSHSMA Sbjct: 131 SKEPVDIPPSLVLPEQLTDEAEYSSFLCYTEWKGDYRYVLDNVMDPMHGTYLHKQSHSMA 190 Query: 186 EGDNTASFGIRETDIGFVFEKEGQRDVNFDWTEWGDTGLHWMRLAIPYPKTGGPGGSFVI 245 EGD++A FGIR+TDIGFVFEKEGQR+VNFDWTEW DTG+HWMRL IPYPKTGGPGG+F+I Sbjct: 191 EGDSSAKFGIRQTDIGFVFEKEGQRNVNFDWTEWADTGIHWMRLEIPYPKTGGPGGNFII 250 Query: 246 IGSYTPVVDNIAAVFHWRCRKLS-GWQRDTWRFLYRNRLEARHWNVLEQDRVVLELMEPD 304 IG+++P+ D + A F WR RKL+ GW+RDTWRFLY+NRLEARHW+VLEQDRV+LE MEPD Sbjct: 251 IGAFSPMADGMTATFFWRVRKLAKGWERDTWRFLYKNRLEARHWHVLEQDRVMLEEMEPD 310 Query: 305 ANQREMLYQHDMGIVRLRRHLRGLAKAQL 333 ANQ E LYQHD+GIVRLRRH+R LA AQL Sbjct: 311 ANQHENLYQHDLGIVRLRRHMRNLAVAQL 339 >ref|YP_550480.1| Rieske (2Fe-2S) domain-containing protein [Polaromonas sp. JS666] gb|ABE45582.1| Rieske (2Fe-2S) region [Polaromonas sp. JS666] Length = 346 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 245/324 (75%), Positives = 273/324 (84%) Query: 3 TAAHDPVDAVLAVGLKDLWYPVCPSEFVAEKPVSLRRLGKKFVFWREPSGKLHALEDHCP 62 T DPVDA+L GLK+LWYP+CPS FV E+P+SLRRLGKK WR+ +G LHALEDHCP Sbjct: 5 TFTKDPVDALLKDGLKNLWYPICPSGFVGERPISLRRLGKKIALWRDAAGTLHALEDHCP 64 Query: 63 HRGAPLSMGIPMGDRIACGYHGVQVRFDGVVTSVPGSPGCKLEGAKATRRFHVTEAAGAI 122 HRGAPLS G+ +GDR+AC YHGV+VR DG VT VPGSPGCKLEG +A FHV EA GAI Sbjct: 65 HRGAPLSQGMVLGDRLACPYHGVEVRCDGTVTKVPGSPGCKLEGTRAALSFHVQEAWGAI 124 Query: 123 FLYNSLEDVDTPPPLRLPEELTSPEYSSFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSH 182 FLYNS ++DTPPP+ +PEEL SPEYS FLCY EWKGDYRY LDNVMDPMHGTFLHKQSH Sbjct: 125 FLYNSDVNIDTPPPMTMPEELNSPEYSHFLCYAEWKGDYRYALDNVMDPMHGTFLHKQSH 184 Query: 183 SMAEGDNTASFGIRETDIGFVFEKEGQRDVNFDWTEWGDTGLHWMRLAIPYPKTGGPGGS 242 SMAEG++TA+F IR TD GFVFEK GQR VNFDWTEWG TG+HWMRL IPYPK+GGPGG+ Sbjct: 185 SMAEGESTATFQIRTTDTGFVFEKTGQRGVNFDWTEWGSTGVHWMRLEIPYPKSGGPGGN 244 Query: 243 FVIIGSYTPVVDNIAAVFHWRCRKLSGWQRDTWRFLYRNRLEARHWNVLEQDRVVLELME 302 F I+G TPV N AVF WRCRK+S WQRDTWRFLYRNRLEARHW VLEQDR++LE ME Sbjct: 245 FAIVGCATPVDGNTTAVFFWRCRKVSSWQRDTWRFLYRNRLEARHWAVLEQDRIMLEQME 304 Query: 303 PDANQREMLYQHDMGIVRLRRHLR 326 PDANQ E LYQHD+G+VRLRRHLR Sbjct: 305 PDANQHENLYQHDIGVVRLRRHLR 328 >ref|XP_002943668.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Xenopus (Silurana) tropicalis] Length = 345 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 243/331 (73%), Positives = 282/331 (85%), Gaps = 1/331 (0%) Query: 6 HDPVDAVLAVGLKDLWYPVCPSEFVAEKPVSLRRLGKKFVFWREPSGKLHALEDHCPHRG 65 DPVDA LAVGLKDLW+PVCPS F+ ++P+SLRR+G K WR+ G++HALEDHCPHRG Sbjct: 10 QDPVDAALAVGLKDLWFPVCPSSFLKKEPISLRRMGYKIALWRDLEGQVHALEDHCPHRG 69 Query: 66 APLSMGIPMGDRIACGYHGVQVRFDGVVTSVPGSPGCKLEGAKATRRFHVTEAAGAIFLY 125 APLS+G+ +GDR+AC YHGV+VR DGV T VP PGCKLEG++ TR FH TE+ GAIFL+ Sbjct: 70 APLSLGVILGDRLACPYHGVEVRHDGVATRVPALPGCKLEGSRTTRMFHATESHGAIFLF 129 Query: 126 NSLE-DVDTPPPLRLPEELTSPEYSSFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHSM 184 NS +DTPPPLRLPEELTSPE+SSFLCYTEW DYRYV+DNV+DPMHGT+LHKQSH+M Sbjct: 130 NSTAPQIDTPPPLRLPEELTSPEWSSFLCYTEWGCDYRYVIDNVIDPMHGTYLHKQSHTM 189 Query: 185 AEGDNTASFGIRETDIGFVFEKEGQRDVNFDWTEWGDTGLHWMRLAIPYPKTGGPGGSFV 244 EGD TA F IR+TD GFVFEK+GQR++NFDWTEW DTG+H MRL IPYPKTGGPGG+F Sbjct: 190 YEGDVTAEFHIRDTDTGFVFEKKGQRNINFDWTEWIDTGIHLMRLEIPYPKTGGPGGNFA 249 Query: 245 IIGSYTPVVDNIAAVFHWRCRKLSGWQRDTWRFLYRNRLEARHWNVLEQDRVVLELMEPD 304 IIGSYTP+ + VFHWRCRK+ GWQRDTWRFL++NRLE RHWNVLEQDRV +E MEPD Sbjct: 250 IIGSYTPISREASGVFHWRCRKVEGWQRDTWRFLFKNRLEQRHWNVLEQDRVAVETMEPD 309 Query: 305 ANQREMLYQHDMGIVRLRRHLRGLAKAQLAR 335 ANQRE LY HDMGIVRLRRHL+ LA+AQ+ R Sbjct: 310 ANQREFLYAHDMGIVRLRRHLKSLAQAQIDR 340 >gb|AAT51469.1| PA3500 [synthetic construct] Length = 340 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 246/337 (72%), Positives = 285/337 (84%), Gaps = 4/337 (1%) Query: 7 DPVDAVLAVGLKDLWYPVCPSEFVAEKPVSLRRLGKKFVFWREPSGKLHALEDHCPHRGA 66 DPV+ +LA GLK+LWYP+CP F+ +KPVSLRRLG K WR+ G LHALEDHCPHRGA Sbjct: 5 DPVEQLLANGLKNLWYPICPVGFIEDKPVSLRRLGYKLAVWRDTDGTLHALEDHCPHRGA 64 Query: 67 PLSMGIPMGDRIACGYHGVQVRFDGVVTSVPGSPGCKLEGAKATRRFHVTEAAGAIFLYN 126 PLS G+ +GDR+ C YHGV+VR DGV VPGSPGCKLEG++ATR FH+TEAAGA++LYN Sbjct: 65 PLSRGVNLGDRLQCPYHGVEVRCDGVTARVPGSPGCKLEGSQATRFFHITEAAGAVWLYN 124 Query: 127 SLEDVDTPPPLRLPEELTSPEYSSFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHSMAE 186 S +V+ PPL LPE+LT PE+S FLCYTEW+GDYRYVLDNVMDPMHGT+LHKQSHSM+E Sbjct: 125 SAGNVEEAPPLVLPEQLTDPEFSHFLCYTEWRGDYRYVLDNVMDPMHGTYLHKQSHSMSE 184 Query: 187 GDNTASFGIRETDIGFVFEKEGQRDVNFDWTEWGDTGLHWMRLAIPYPKTGGPGGSFVII 246 G++ A F R+TD GF+FEK+GQR VNFDWTEW DTG+HWMRL IPYPKTGGPGG+F I+ Sbjct: 185 GESQARFVTRDTDTGFIFEKDGQRGVNFDWTEWADTGMHWMRLEIPYPKTGGPGGNFHIV 244 Query: 247 GSYTPVVDNIAAVFHWRCRKLSGWQRDTWRFLYRNRLEARHWNVLEQDRVVLELMEPDAN 306 GSYTP+ ++ AVFHWRCR L+GWQRDTWRFLYRNRLEARHW VLEQDR +LE MEPDAN Sbjct: 245 GSYTPIARDLCAVFHWRCRPLTGWQRDTWRFLYRNRLEARHWAVLEQDREMLEFMEPDAN 304 Query: 307 QREMLYQHDMGIVRLRRHLRGLAKAQLAREEELAAAR 343 QRE LYQHD+G+VRLRRHL+ LAKAQL EL AR Sbjct: 305 QRENLYQHDLGLVRLRRHLKNLAKAQL----ELIEAR 337