BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2846.p         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_252191.1| hypothetical protein PA3501 [Pseudomonas aerugi...    89   2e-16
gb|AAT50636.1| PA3501 [synthetic construct]                            88   4e-16
ref|YP_003280646.1| hypothetical protein CtCNB1_4604 [Comamonas ...    86   2e-15
ref|YP_550481.1| hypothetical protein Bpro_3682 [Polaromonas sp....    85   4e-15
ref|YP_001561994.1| hypothetical protein Daci_0963 [Delftia acid...    77   1e-12

>ref|NP_252191.1| hypothetical protein PA3501 [Pseudomonas aeruginosa PAO1]
 gb|AAG06889.1|AE004770_14 hypothetical protein PA3501 [Pseudomonas aeruginosa PAO1]
          Length = 72

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 8  DVYLNPHQARRRLPTQFEDLLGDSIERAYAAGIHELSALVAHLNRTGPSCPYNAGVWTEA 67
          D YL PHQAR R P  FEDLLGDSIERAYAAG+H+L  L+ +LN+ GP+CP   G WTE 
Sbjct: 3  DRYLEPHQARTREPNAFEDLLGDSIERAYAAGLHDLPGLLGYLNQAGPTCP-GGGPWTEE 61

Query: 68 NYQEEIARLAA 78
           Y+  +ARL A
Sbjct: 62 AYKTLMARLGA 72


>gb|AAT50636.1| PA3501 [synthetic construct]
          Length = 73

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 8  DVYLNPHQARRRLPTQFEDLLGDSIERAYAAGIHELSALVAHLNRTGPSCPYNAGVWTEA 67
          D YL PHQAR R P  FEDLLGDSIERAYAAG+H+L  L  +LN+ GP+CP   G WTE 
Sbjct: 3  DRYLEPHQARTREPNAFEDLLGDSIERAYAAGLHDLPGLPGYLNQAGPTCP-GGGPWTEE 61

Query: 68 NYQEEIARLAA 78
           Y+  +ARL A
Sbjct: 62 AYKTLMARLGA 72


>ref|YP_003280646.1| hypothetical protein CtCNB1_4604 [Comamonas testosteroni CNB-2]
 gb|ACY35350.1| conserved hypothetical protein [Comamonas testosteroni CNB-2]
          Length = 72

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/72 (62%), Positives = 55/72 (76%), Gaps = 1/72 (1%)

Query: 6  VTDVYLNPHQARRRLPTQFEDLLGDSIERAYAAGIHELSALVAHLNRTGPSCPYNAGVWT 65
          +TD YL+PHQAR+R PT +EDLLGD+IERAYAAGIH+LS LV  LN +G + P +   WT
Sbjct: 1  MTDRYLDPHQARKRQPTTYEDLLGDAIERAYAAGIHDLSGLVQALNGSGLASP-SGSTWT 59

Query: 66 EANYQEEIARLA 77
          E  Y+ EIA LA
Sbjct: 60 EEVYRREIAALA 71


>ref|YP_550481.1| hypothetical protein Bpro_3682 [Polaromonas sp. JS666]
 gb|ABE45583.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 73

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 7  TDVYLNPHQARRRLPTQFEDLLGDSIERAYAAGIHELSALVAHLNRTGPSCPYNAGVWTE 66
          TD YL PHQAR+R PT FEDLLGD+IERA+A G H L  LVA LNRTGPS   N   WTE
Sbjct: 3  TDRYLEPHQARQRAPTTFEDLLGDAIERAFAEGAHTLPELVACLNRTGPSSE-NGQPWTE 61

Query: 67 ANYQEEIARLA 77
          + +Q  +ARL 
Sbjct: 62 SGFQALMARLG 72


>ref|YP_001561994.1| hypothetical protein Daci_0963 [Delftia acidovorans SPH-1]
 ref|YP_004490885.1| hypothetical protein DelCs14_5560 [Delftia sp. Cs1-4]
 gb|ABX33609.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
 gb|AEF92530.1| hypothetical protein DelCs14_5560 [Delftia sp. Cs1-4]
          Length = 73

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/70 (57%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 8  DVYLNPHQARRRLPTQFEDLLGDSIERAYAAGIHELSALVAHLNRTGPSCPYNAGVWTEA 67
          D YL PHQAR R PT  EDLLGDSIERA+  G+  L  LVA+LNR+GP+   N   WTE 
Sbjct: 4  DRYLEPHQARERAPTLMEDLLGDSIERAFGEGVQTLPELVAYLNRSGPAGE-NGQAWTED 62

Query: 68 NYQEEIARLA 77
          ++Q  +ARL 
Sbjct: 63 SFQALMARLG 72