BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2838.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001893023.1| IclR family transcriptional regulator [Ralst... 390 e-106 ref|ZP_07674479.1| transcriptional regulator, IclR family [Ralst... 387 e-105 ref|YP_004680885.1| IclR family transcriptional regulator [Cupri... 383 e-104 ref|YP_728895.1| IclR family transcriptional regulator [Ralstoni... 378 e-103 ref|YP_004155887.1| IclR family transcriptional regulator [Vario... 375 e-102 >ref|YP_001893023.1| IclR family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002984549.1| IclR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACD29596.1| transcriptional regulator, IclR family [Ralstonia pickettii 12J] gb|ACS65877.1| transcriptional regulator, IclR family [Ralstonia pickettii 12D] Length = 275 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 206/276 (74%), Positives = 236/276 (85%), Gaps = 2/276 (0%) Query: 1 MNKPVIPEEESQDKYSVPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATL 60 M+ +IPE+ Q+KY VPGLERGLRLLCEFS +D+ LSAPELARRL +PRSTVFRLL TL Sbjct: 1 MSNDLIPED-VQEKYIVPGLERGLRLLCEFSHKDRVLSAPELARRLKVPRSTVFRLLTTL 59 Query: 61 ERMGFVERADGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDG 120 E MGF+ER DGGRD+RLGM+VLRLGFEYLASLELTE+GRPLLDRLRDEI Y CNLVVRDG Sbjct: 60 EVMGFIERVDGGRDFRLGMAVLRLGFEYLASLELTELGRPLLDRLRDEIHYPCNLVVRDG 119 Query: 121 RSIVYVAKSVTQTAFTSHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSN 180 RSIVYVAKSV T FTS VNVGTRLPAHATVLGRVLL DL+L +LR LYPE LEVFS+N Sbjct: 120 RSIVYVAKSVAPTPFTSSVNVGTRLPAHATVLGRVLLADLSLAELRQLYPEPQLEVFSAN 179 Query: 181 TPKTVVELFDMVQADKERGFVLQEGFFETSISTVAAPVRDHSGHVVAALGATIPSPHIDA 240 TP+TV ELF+MVQ D+E G+VLQEGFFE +IST+AAPV D +G VVAALG TIPSP I+A Sbjct: 180 TPRTVEELFEMVQRDREHGYVLQEGFFEANISTIAAPVLDRAGKVVAALGTTIPSPRIEA 239 Query: 241 SQLDVIVSRVRETAAELSRLLDHAPERGAKVVNMWR 276 +QLD+++ +VR A ELS LLD+ P G KVVN++R Sbjct: 240 AQLDLMIDKVRAAAGELSYLLDYRPA-GGKVVNLFR 274 >ref|ZP_07674479.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA] gb|EFP67159.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA] Length = 275 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 205/276 (74%), Positives = 235/276 (85%), Gaps = 2/276 (0%) Query: 1 MNKPVIPEEESQDKYSVPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATL 60 M+ +IPE+ Q+KY VPGLERGLRLLCEFS +D+ LSAPELARRL +PRSTVFRLL TL Sbjct: 1 MSNDLIPED-VQEKYIVPGLERGLRLLCEFSHKDRVLSAPELARRLKVPRSTVFRLLTTL 59 Query: 61 ERMGFVERADGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDG 120 E MGF+ER DGGRD+RLGM+VLRLGFEYLASLELTE+GRPLLDRLRD+I Y CNLVVRDG Sbjct: 60 EVMGFIERVDGGRDFRLGMAVLRLGFEYLASLELTELGRPLLDRLRDDIHYPCNLVVRDG 119 Query: 121 RSIVYVAKSVTQTAFTSHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSN 180 RSIVYVAKSV T FTS VNVGTRLPAHATVLGRVLL DL+L +LR LYPE LEVFS+N Sbjct: 120 RSIVYVAKSVAPTPFTSSVNVGTRLPAHATVLGRVLLADLSLAELRQLYPEPQLEVFSAN 179 Query: 181 TPKTVVELFDMVQADKERGFVLQEGFFETSISTVAAPVRDHSGHVVAALGATIPSPHIDA 240 TP+TV ELF MVQ D+E G+VLQEGFFE +IST+AAPV D +G VVAALG TIPSP I+A Sbjct: 180 TPRTVEELFVMVQRDREHGYVLQEGFFEANISTIAAPVLDRAGKVVAALGTTIPSPRIEA 239 Query: 241 SQLDVIVSRVRETAAELSRLLDHAPERGAKVVNMWR 276 +QLD+++ +VR A ELS LLD+ P G KVVN++R Sbjct: 240 AQLDLMIDKVRAAAGELSYLLDYRPASG-KVVNLFR 274 >ref|YP_004680885.1| IclR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI79653.1| transcriptional regulator IclR family [Cupriavidus necator N-1] Length = 297 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 207/277 (74%), Positives = 237/277 (85%), Gaps = 4/277 (1%) Query: 4 PVIPE-EESQDKYSVPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLER 62 P P E+ DKY VPGLERGLRLL EFS +D+T+SA ELARRL +PRSTVFRLLATLE Sbjct: 20 PATPAANETPDKYIVPGLERGLRLLSEFSSKDRTMSAAELARRLKVPRSTVFRLLATLEM 79 Query: 63 MGFVERADGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRS 122 +GFVERADGGRD+RLGM+VLRLGFEYLASLELTE+GRPLL+RLRDEIGY NLVVRDGRS Sbjct: 80 LGFVERADGGRDFRLGMAVLRLGFEYLASLELTELGRPLLERLRDEIGYPSNLVVRDGRS 139 Query: 123 IVYVAKSVTQTAFTSHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSNTP 182 IVYVAK+V+ F S VNVGTRLPAHATVLGRVLLEDL+L +LRTLYPE HL VFS +TP Sbjct: 140 IVYVAKAVSPRPFASSVNVGTRLPAHATVLGRVLLEDLSLAELRTLYPETHLAVFSESTP 199 Query: 183 KTVVELFDMVQADKERGFVLQEGFFETSISTVAAPVRDHSGHVVAALGATIPSPHIDASQ 242 +TV EL ++VQ D+ERG+VLQEGFFE SIST+AAPVRD +G VVAALGATIP+ HID +Q Sbjct: 200 RTVDELHEIVQRDRERGYVLQEGFFEASISTIAAPVRDRTGKVVAALGATIPAAHIDPAQ 259 Query: 243 LDVIVSRVRETAAELSRLLDHAP---ERGAKVVNMWR 276 LD +V +VR+TA ELSRLLD+ P GAKVVN++R Sbjct: 260 LDAMVEKVRDTAGELSRLLDYRPSLHSSGAKVVNLYR 296 >ref|YP_728895.1| IclR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ95530.1| transcriptional regulator, IclR-family [Ralstonia eutropha H16] Length = 297 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 204/270 (75%), Positives = 234/270 (86%), Gaps = 3/270 (1%) Query: 10 ESQDKYSVPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLERMGFVERA 69 E+ DKY VPGLERGLRLL EFS +D+T+SA ELARRL +PRSTVFRLLATLE +GFVERA Sbjct: 27 ETPDKYIVPGLERGLRLLSEFSSKDRTMSAAELARRLKVPRSTVFRLLATLEMLGFVERA 86 Query: 70 DGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAKS 129 DGGRD+RLGM+VLRLGFEYLASLELTE+GRPLL+RLRDEIGY NLVVRDGRSIVYVAK+ Sbjct: 87 DGGRDFRLGMAVLRLGFEYLASLELTELGRPLLERLRDEIGYPSNLVVRDGRSIVYVAKA 146 Query: 130 VTQTAFTSHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSNTPKTVVELF 189 V+ F S VNVGTRLPAHATVLGRVLLEDL+L +LRTLYPE L VFS +TP+TV EL Sbjct: 147 VSPRPFASSVNVGTRLPAHATVLGRVLLEDLSLAELRTLYPETQLAVFSESTPRTVDELH 206 Query: 190 DMVQADKERGFVLQEGFFETSISTVAAPVRDHSGHVVAALGATIPSPHIDASQLDVIVSR 249 ++VQ D+ERG+VLQEGFFE SIST+AAPVRD +G VVAALGATIP+ HID +QLD +V + Sbjct: 207 EIVQRDRERGYVLQEGFFEASISTIAAPVRDRTGKVVAALGATIPAAHIDPAQLDAMVEK 266 Query: 250 VRETAAELSRLLDHAP---ERGAKVVNMWR 276 VR+TA ELSRLLD+ P GAKVVN++R Sbjct: 267 VRDTAGELSRLLDYRPSLRSSGAKVVNLYR 296 >ref|YP_004155887.1| IclR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU37776.1| transcriptional regulator, IclR family [Variovorax paradoxus EPS] Length = 279 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 194/264 (73%), Positives = 227/264 (85%) Query: 9 EESQDKYSVPGLERGLRLLCEFSRQDKTLSAPELARRLDIPRSTVFRLLATLERMGFVER 68 EE D+Y+VP LERGLR+LCEFSR+++TLSAPELARR D+PRSTVFRLL TLE MGF+ER Sbjct: 11 EEGADRYNVPALERGLRVLCEFSRENRTLSAPELARRFDLPRSTVFRLLTTLENMGFLER 70 Query: 69 ADGGRDYRLGMSVLRLGFEYLASLELTEIGRPLLDRLRDEIGYSCNLVVRDGRSIVYVAK 128 A+GGRDYRLG++VLRLGFEYLASLELT++G PLL+RL DE+ CNLVVRDGRSIVYVAK Sbjct: 71 AEGGRDYRLGLAVLRLGFEYLASLELTQLGTPLLNRLCDELRTPCNLVVRDGRSIVYVAK 130 Query: 129 SVTQTAFTSHVNVGTRLPAHATVLGRVLLEDLTLPQLRTLYPEEHLEVFSSNTPKTVVEL 188 T F S V VGTRLPAHATVLGRVLLEDLTLPQLR LYPE+ LE FS +TPKTV EL Sbjct: 131 VAPPTPFASSVTVGTRLPAHATVLGRVLLEDLTLPQLRALYPEDKLETFSPSTPKTVNEL 190 Query: 189 FDMVQADKERGFVLQEGFFETSISTVAAPVRDHSGHVVAALGATIPSPHIDASQLDVIVS 248 FDMVQAD+ RG+VL EGFFE++IS++AAPVRDHSGH+VAALGATI S HI+ +++D +V Sbjct: 191 FDMVQADRTRGYVLGEGFFESNISSIAAPVRDHSGHIVAALGATITSGHIEENRMDEMVL 250 Query: 249 RVRETAAELSRLLDHAPERGAKVV 272 RVR TA E+S LL+++P R KVV Sbjct: 251 RVRSTAEEISGLLNYSPARSNKVV 274