BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2833.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_252202.1| ABC transporter permease [Pseudomonas aeruginos... 339 3e-91 ref|YP_673379.1| binding-protein-dependent transport systems inn... 238 1e-60 ref|YP_118967.1| putative transporter [Nocardia farcinica IFM 10... 167 2e-39 ref|YP_003319755.1| binding-protein-dependent transport systems ... 166 6e-39 ref|YP_004543146.1| ABC-type transporter, integral membrane subu... 163 3e-38 >ref|NP_252202.1| ABC transporter permease [Pseudomonas aeruginosa PAO1] gb|AAG06900.1|AE004771_9 probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] Length = 258 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 184/237 (77%), Positives = 211/237 (89%) Query: 50 WQWGPGMLGMPEYILPNFMQVVREGVVMWNNAQLLQHFGITAMEVVFGFLFGALLGLAVG 109 WQWGPG+LGMPE++LP +V EGV MW+ A LL+H IT++E+V GF GALLG+++G Sbjct: 22 WQWGPGLLGMPEFVLPGLSRVAAEGVAMWHGAGLLEHTAITSLEIVVGFALGALLGVSIG 81 Query: 110 VALGLSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVL 169 VALGLSP EAMLSPYILALQIAPKVAFAPLFVMWLGYT+YPKI++AVLIVFFP+MINVL Sbjct: 82 VALGLSPTTEAMLSPYILALQIAPKVAFAPLFVMWLGYTVYPKILIAVLIVFFPVMINVL 141 Query: 170 SAIRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGG 229 SAIRTVDPDM+NLVR ++A RWQIF LVEF SA+ ALFSGLRIASTL+VIGVTVGELVGG Sbjct: 142 SAIRTVDPDMINLVRAMSASRWQIFRLVEFPSAMAALFSGLRIASTLAVIGVTVGELVGG 201 Query: 230 NQGLGYLLVDGEGQGNTAAVFVSIVALTLIGVVTYGAVVWAERKVLHYLPKANTSTV 286 N+GLG+LLVD EGQGNTA VFV+IV LTLIGV+ YGAVVWAE++VLHYLPKAN TV Sbjct: 202 NKGLGFLLVDAEGQGNTAGVFVAIVMLTLIGVLAYGAVVWAEKRVLHYLPKANLGTV 258 >ref|YP_673379.1| binding-protein-dependent transport systems inner membrane component [Mesorhizobium sp. BNC1] gb|ABG62214.1| binding-protein-dependent transport systems inner membrane component [Chelativorans sp. BNC1] Length = 270 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 140/275 (50%), Positives = 187/275 (68%), Gaps = 6/275 (2%) Query: 11 MSSSEPSA-AAPSRPRRHFLSDKAQTVCGSLVLLVLFIAAWQWGPGMLGMPEYILPNFMQ 69 MS++ +A A+PSRP + V L++L + W++ P LG+P +I+P Sbjct: 1 MSTTTVNAPASPSRP-----AVLQPHVLIGLLILSAVLLIWEFLPPALGVPRFIIPTISD 55 Query: 70 VVREGVVMWNNAQLLQHFGITAMEVVFGFLFGALLGLAVGVALGLSPRAEAMLSPYILAL 129 + E M+ L+ + TA+ V GF G++LG +G LGLS E +LSPYILAL Sbjct: 56 MAGELGRMYRRENLIPNILSTALYTVLGFAIGSMLGAIIGYLLGLSRFWEKVLSPYILAL 115 Query: 130 QIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAG 189 QIAPKVAFAPLF+MW GY PK++V VLIVFFP+++NVL+A++TVD DMVNL R N Sbjct: 116 QIAPKVAFAPLFIMWFGYNATPKLLVTVLIVFFPVLVNVLAAMKTVDRDMVNLARAYNLS 175 Query: 190 RWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAV 249 RWQIF V+F S LP L +GLRI+STL+VIGVTVGELVGGN GLG+L+ G GQ N A V Sbjct: 176 RWQIFLKVQFPSTLPNLLAGLRISSTLAVIGVTVGELVGGNTGLGFLIAYGGGQANAAMV 235 Query: 250 FVSIVALTLIGVVTYGAVVWAERKVLHYLPKANTS 284 F +I+ LT+IG+ Y + WAE ++LHY+PK++ S Sbjct: 236 FNAIILLTIIGIALYSVLAWAEERLLHYIPKSHIS 270 >ref|YP_118967.1| putative transporter [Nocardia farcinica IFM 10152] dbj|BAD57603.1| putative transporter [Nocardia farcinica IFM 10152] Length = 290 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 5/263 (1%) Query: 13 SSEPSAAAPSRPRRHFL---SDKAQTVCGSLVLLVLFIAAWQWGPGMLGMPEYILPNFMQ 69 SS P A P RPRR L S TV L L+ + AW + YILP+ + Sbjct: 11 SSAPKATQPVRPRRRKLPPLSSLWSTVWRPLALVAALVVAWWVVTEFELVEPYILPSPAE 70 Query: 70 VVREGVVMWNNAQLLQHFGITAMEVVFGFLFGALLGLAVGVALGLSPRAEAMLSPYILAL 129 R V N+A LL++ +T E V GF+ AL+G AV + + S E + P IL Sbjct: 71 TWRTTVD--NSAYLLENTWVTTYETVVGFVIAALIGEAVALVMIYSRSVERTMYPLILFA 128 Query: 130 QIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAG 189 Q+ PK+A APLF++WLG+ PKI+VAVL+ FFPI+I+ ++ +R+VDP+++ L T+ AG Sbjct: 129 QVIPKIAIAPLFIVWLGFGTSPKILVAVLMAFFPIVISGMAGLRSVDPEILELTSTMGAG 188 Query: 190 RWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAV 249 W+ F V F ++LP L SGL+IA+TL+V G VGE VG N+GLGY+++ G +TA + Sbjct: 189 NWKTFVKVRFPASLPQLMSGLKIAATLAVTGAVVGEFVGANEGLGYVILQANGNIDTAML 248 Query: 250 FVSIVALTLIGVVTYGAVVWAER 272 F +++ ++L+G++ + + AE+ Sbjct: 249 FAALIIMSLLGIILFAIIEIAEQ 271 >ref|YP_003319755.1| binding-protein-dependent transport systems inner membrane component [Sphaerobacter thermophilus DSM 20745] gb|ACZ38933.1| binding-protein-dependent transport systems inner membrane component [Sphaerobacter thermophilus DSM 20745] Length = 279 Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 97/268 (36%), Positives = 153/268 (57%), Gaps = 4/268 (1%) Query: 13 SSEPSAAAPSRP---RRHFLSDKAQTVCGSLVLLVLFIAAWQWGPGMLGMPEYILPNFMQ 69 +S A P R RR+ L ++ + + + VL +A W+ +L +P YILP + Sbjct: 2 ASRSLAEQPRRAASLRRYMLRNRPEILLVP-TIFVLIVAVWELLVKLLAVPIYILPPPTE 60 Query: 70 VVREGVVMWNNAQLLQHFGITAMEVVFGFLFGALLGLAVGVALGLSPRAEAMLSPYILAL 129 + R + L++H +T EV+ GF G++ GL VGV + E + PY++A Sbjct: 61 IWRAFRDGLGSGSLVEHTWVTLQEVLLGFAVGSVAGLVVGVIVTRFRLVERTVYPYVVAF 120 Query: 130 QIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAG 189 Q PKVA APL V W G+ + K++ LI FFP+++NV++ +++VD D ++L+R++NA Sbjct: 121 QTVPKVALAPLIVTWFGFGMTSKVVTTALIAFFPLLVNVIAGLQSVDQDRIDLLRSVNAS 180 Query: 190 RWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAV 249 WQIF +V F SALP +F+GL +A SVIG V E VG GLGYL+ N + Sbjct: 181 EWQIFRMVRFPSALPFIFAGLDVAIVFSVIGAIVSEFVGARAGLGYLIQVNNYNLNVSGT 240 Query: 250 FVSIVALTLIGVVTYGAVVWAERKVLHY 277 F +V L+++G+ + V W R+V+ + Sbjct: 241 FAVLVVLSVMGLTLHLVVQWVNRRVVFW 268 >ref|YP_004543146.1| ABC-type transporter, integral membrane subunit [Isoptericola variabilis 225] gb|AEG45252.1| ABC-type transporter, integral membrane subunit [Isoptericola variabilis 225] Length = 295 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 100/258 (38%), Positives = 154/258 (59%), Gaps = 5/258 (1%) Query: 21 PSRPRRHFLSDKAQTVCGS---LVLLVLFIAAWQWGPGMLGMPEYILPNFMQVVREGVVM 77 P+R L+ A V S L++LV A W + +P Y++P V V Sbjct: 25 PARTSTPLLTRAANLVAVSWRPLLVLVALFAVWWFVAWRELVPAYLIPAPGAVWETMVDD 84 Query: 78 WNNAQLLQHFGITAMEVVFGFLFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAF 137 W A LL+H +T +E + GFL ++G+A V L S AE L P IL Q+ PK+A Sbjct: 85 W--AMLLEHTWVTTLETIIGFLLATVIGVATAVVLVYSKTAEKALYPLILFAQVIPKIAI 142 Query: 138 APLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHLV 197 AP+ V+W G+ + PKI++AVLI FFP++++ ++ +R+VDP+++ L T+ A RW+ F + Sbjct: 143 APILVVWFGFGLTPKIVLAVLIAFFPVVVSAVAGLRSVDPELLELSATMGASRWKTFRKI 202 Query: 198 EFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVSIVALT 257 F ALP L SGL++A TL+V+G VGE VG ++GLGY+L+ G N +F ++ ++ Sbjct: 203 RFPGALPHLMSGLKVAVTLAVVGAVVGEFVGADRGLGYVLLLASGNLNAPLLFADLILMS 262 Query: 258 LIGVVTYGAVVWAERKVL 275 LIGVV + V +ER ++ Sbjct: 263 LIGVVLFVVVELSERVLI 280