BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2832.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_252203.1| hypothetical protein PA3513 [Pseudomonas aerugi... 381 e-104 gb|AAT51495.1| PA3513 [synthetic construct] 381 e-104 ref|YP_673380.1| putative sulfonate transport system substrate-b... 223 5e-56 ref|ZP_07831407.1| NMT1/THI5-like protein [Clostridium sp. HGF2]... 104 2e-20 ref|ZP_08858595.1| hypothetical protein HMPREF9022_04252 [Erysip... 104 2e-20 >ref|NP_252203.1| hypothetical protein PA3513 [Pseudomonas aeruginosa PAO1] gb|AAG06901.1|AE004771_10 hypothetical protein PA3513 [Pseudomonas aeruginosa PAO1] Length = 335 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 204/311 (65%), Positives = 254/311 (81%), Gaps = 1/311 (0%) Query: 21 FVVPAMAQAAPEEVTYLLPAPPNSPAFAPWVLAQHKGYYADENLKVSFIVAKGGVDVAKQ 80 F QAAP EVTYLLPAPPNSPAFAPWV+A+ KGYYAD LKV+F+ KGGVDVAKQ Sbjct: 15 FAAGLTVQAAPREVTYLLPAPPNSPAFAPWVIAREKGYYADLGLKVTFVAGKGGVDVAKQ 74 Query: 81 IGAGNAVIGGAIGDTPIVVRANGIPVKAIAVLGAGSVTMVAANPAEGIKTLKDLKGKTVT 140 IGAGNA +GGAIGDTPIVVRANGIPVKA+AVLGAG VTM+A + GI ++KDLKGKT+T Sbjct: 75 IGAGNAPVGGAIGDTPIVVRANGIPVKAVAVLGAGGVTMIATDGTAGIDSVKDLKGKTLT 134 Query: 141 VMSYTDTTYYAFLGSLKTAGLSKTDVQIQAAGPSGVWQLYTSGKSQGFAGVPDWVVNATD 200 VMSY+DTTYYA L S++ AGL K+DV IQAAGPSGVWQL+++G+SQ AGVPDWVV+A D Sbjct: 135 VMSYSDTTYYALLASMRKAGLGKSDVDIQAAGPSGVWQLFSAGRSQAMAGVPDWVVSAED 194 Query: 201 AGAKLELLDNGG-FKSMAQAILASDDTIKKNPELLKRLVRATLRGMQDIMKDPKAAADDY 259 AG +++LL F+SMAQAILASD+ I+K PE++ +VRATL GM+DI+ DP+ AA + Sbjct: 195 AGRQVKLLPGSEVFESMAQAILASDEAIEKQPEVVGGVVRATLMGMRDIIADPRQAAATF 254 Query: 260 VAALPTYKGKEASIQTTFEMYNKYVYASQKTLGQIDPSRMDAVQKFYVSEGIVSKATPVN 319 AA+P YKG+EAS++ +Y ++VYA+Q+ LG IDP R+D V++FYVSEGIV + TP++ Sbjct: 255 AAAVPAYKGREASLERVLRLYVEHVYANQQPLGHIDPQRLDKVRRFYVSEGIVGRETPLD 314 Query: 320 ELFTNQFVGVA 330 EL+TN+FV A Sbjct: 315 ELYTNRFVESA 325 >gb|AAT51495.1| PA3513 [synthetic construct] Length = 336 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 204/311 (65%), Positives = 254/311 (81%), Gaps = 1/311 (0%) Query: 21 FVVPAMAQAAPEEVTYLLPAPPNSPAFAPWVLAQHKGYYADENLKVSFIVAKGGVDVAKQ 80 F QAAP EVTYLLPAPPNSPAFAPWV+A+ KGYYAD LKV+F+ KGGVDVAKQ Sbjct: 15 FAAGLTVQAAPREVTYLLPAPPNSPAFAPWVIAREKGYYADLGLKVTFVAGKGGVDVAKQ 74 Query: 81 IGAGNAVIGGAIGDTPIVVRANGIPVKAIAVLGAGSVTMVAANPAEGIKTLKDLKGKTVT 140 IGAGNA +GGAIGDTPIVVRANGIPVKA+AVLGAG VTM+A + GI ++KDLKGKT+T Sbjct: 75 IGAGNAPVGGAIGDTPIVVRANGIPVKAVAVLGAGGVTMIATDGTAGIDSVKDLKGKTLT 134 Query: 141 VMSYTDTTYYAFLGSLKTAGLSKTDVQIQAAGPSGVWQLYTSGKSQGFAGVPDWVVNATD 200 VMSY+DTTYYA L S++ AGL K+DV IQAAGPSGVWQL+++G+SQ AGVPDWVV+A D Sbjct: 135 VMSYSDTTYYALLASMRKAGLGKSDVDIQAAGPSGVWQLFSAGRSQAMAGVPDWVVSAED 194 Query: 201 AGAKLELLDNGG-FKSMAQAILASDDTIKKNPELLKRLVRATLRGMQDIMKDPKAAADDY 259 AG +++LL F+SMAQAILASD+ I+K PE++ +VRATL GM+DI+ DP+ AA + Sbjct: 195 AGRQVKLLPGSEVFESMAQAILASDEAIEKQPEVVGGVVRATLMGMRDIIADPRQAAATF 254 Query: 260 VAALPTYKGKEASIQTTFEMYNKYVYASQKTLGQIDPSRMDAVQKFYVSEGIVSKATPVN 319 AA+P YKG+EAS++ +Y ++VYA+Q+ LG IDP R+D V++FYVSEGIV + TP++ Sbjct: 255 AAAVPAYKGREASLERVLRLYVEHVYANQQPLGHIDPQRLDKVRRFYVSEGIVGRETPLD 314 Query: 320 ELFTNQFVGVA 330 EL+TN+FV A Sbjct: 315 ELYTNRFVESA 325 >ref|YP_673380.1| putative sulfonate transport system substrate-binding protein [Mesorhizobium sp. BNC1] gb|ABG62215.1| putative sulfonate transport system substrate-binding protein [Chelativorans sp. BNC1] Length = 326 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 118/299 (39%), Positives = 177/299 (59%), Gaps = 3/299 (1%) Query: 32 EEVTYLLPAPPNSPAFAPWVLAQHKGYYADENLKVSFIVAKGGVDVAKQIGAGNAVIGGA 91 E +TYL PAP PAFAP+ LA HKGYY +E L V F V +GG DVA Q+ GN +GG Sbjct: 25 ENLTYLFPAPDFLPAFAPFQLAYHKGYYEEEGLNVEFRVGQGGADVATQVAVGNVDMGGG 84 Query: 92 IGDTPIVVRANGIPVKAIAVLGAGSVTMVAANPAEGIKTLKDLKGKTVTVMSYTDTTYYA 151 +GDT ++VR NG+ V+ +A+LG +T +A GI+++ DL+G+++ V ++ DT YY Sbjct: 85 MGDTAMIVRPNGLEVRGVALLGGRGLTHIAWRNDSGIESVADLEGQSIAVTTFQDTAYYN 144 Query: 152 FLGSLKTAGLSKTDVQIQAAGPSGVWQLYTSGKSQGFAGVPDWVVNATDAGAKLELLD-N 210 L L G+ + + IQA G G+ Q +G Q +GVP+W+V+ DAG L ++ + Sbjct: 145 LLAVLAGEGIDRPEADIQALGSGGLIQAMIAGSVQAMSGVPEWIVSIQDAGVDLTVMPVS 204 Query: 211 GGFKSMAQAILASDDTIKKNPELLKRLVRATLRGMQDIMKDPKAAADDYVAALPTYKGKE 270 F + QAI+ASD I ++PE VRATLR + DI+ DP AA +YV + + Sbjct: 205 ELFPAQPQAIIASDQFIAEHPERAAGFVRATLRAIDDIVADPALAAQEYVGFIDQHAENV 264 Query: 271 ASIQTTFEMYNKYVYASQKTL--GQIDPSRMDAVQKFYVSEGIVSKATPVNELFTNQFV 327 I+ Y + VY L G + ++ +Q FY++ I++ A P+ +++TNQFV Sbjct: 265 DQIERILRFYVESVYVEMDGLPRGAFNEGQLLEIQDFYLANDIITSAVPIQDVYTNQFV 323 >ref|ZP_07831407.1| NMT1/THI5-like protein [Clostridium sp. HGF2] gb|EFR39028.1| NMT1/THI5-like protein [Clostridium sp. HGF2] Length = 335 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 4/209 (1%) Query: 44 SPAFAPWVLAQHKGYYADENLKVSFIVAKGGVDVAKQIGAGNAVIGGAIGDTPIVVRANG 103 +P +AP LAQ KGY+ +E L+V+F A ++ K +GAGN G DT ++ R NG Sbjct: 43 TPYYAPLYLAQEKGYFKEEGLQVNFYYASAA-EIVKNVGAGNVPFGFPNADTVLLGRGNG 101 Query: 104 IPVKAIAVLGAGSVTMVAANPAEGIKTLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGLSK 163 +PV I + + GI ++DLKGKT+ + SY Y L+ GLS Sbjct: 102 VPVNIIHTTYQKGLGAIIYKSESGIHKIQDLKGKTIAITSYGSPNYIQLKVILQQNGLSI 161 Query: 164 TDVQIQAAGPSGVWQLYTSGKSQG--FAGVPDWVVNATDAGAKLELLDNGGFKSMAQAIL 221 DVQI+ G + S + F+ + + + ++ K + L N S ++ Sbjct: 162 HDVQIKVIGTGAIVNALVSNQVDAICFSKLRTYELQSSGIDVK-QFLSNDYMPSYGNVVI 220 Query: 222 ASDDTIKKNPELLKRLVRATLRGMQDIMK 250 S +K++PE+ + A RGMQDI++ Sbjct: 221 TSQTFLKEHPEICRGFTNALNRGMQDIIE 249 >ref|ZP_08858595.1| hypothetical protein HMPREF9022_04252 [Erysipelotrichaceae bacterium 2_2_44A] gb|EGX71418.1| hypothetical protein HMPREF9022_04252 [Erysipelotrichaceae bacterium 2_2_44A] Length = 335 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 4/209 (1%) Query: 44 SPAFAPWVLAQHKGYYADENLKVSFIVAKGGVDVAKQIGAGNAVIGGAIGDTPIVVRANG 103 +P +AP LAQ KGY+ +E L+V+F A ++ K +GAGN G DT ++ R NG Sbjct: 43 TPYYAPLYLAQEKGYFKEEGLQVNFYYASAA-EIVKNVGAGNVPFGFPNADTVLLGRGNG 101 Query: 104 IPVKAIAVLGAGSVTMVAANPAEGIKTLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGLSK 163 +PV I + + GI ++DLKGKT+ + SY Y L+ GLS Sbjct: 102 VPVNIIHTTYQKGLGAIIYKSESGIHKIQDLKGKTIAITSYGSPNYIQLKVILQQNGLSI 161 Query: 164 TDVQIQAAGPSGVWQLYTSGKSQG--FAGVPDWVVNATDAGAKLELLDNGGFKSMAQAIL 221 DVQI+ G + S + F+ + + + ++ K + L N S ++ Sbjct: 162 HDVQIKVIGTGAIVNALVSNQVDAICFSKLRTYELQSSGIDVK-QFLSNDYMPSYGNVVI 220 Query: 222 ASDDTIKKNPELLKRLVRATLRGMQDIMK 250 S +K++PE+ + A RGMQDI++ Sbjct: 221 TSQTFLKEHPEICRGFTNALNRGMQDIIE 249